BAC Information

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BAC

Clone NameB6Ng01-261A14
Chromosome13 (Build37)
Map Location 28,136,166 - 28,137,308
singlet/doubletsinglet
Overlap genenone
Upstream genePrl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1
Downstream genePrl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261A14.bB6Ng01-261A14.g
ACCGA065806GA065807
length2791,141
definitionB6Ng01-261A14.b B6Ng01-261A14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aaggcacatacctaaacataataaaagcaatctacagcaaaccaatagcc
aacatatggagagaagctgaatgcaatcccactaaagtcagggactagac
aagactgcccactttctcgctacctgggaatgccaggacagaaatgggaa
tgggtgggctagtgagcaggttggaaggattggataggggaggtttcagg
ggggaaatgggaaaaggggatataatttgtaatgcaatagaagaaaatag
ctaatttatataaaatggatatttgggat
gaattctgaaggtctctcttatcttgtaccaaagacaaattgttgctctg
taaaagaaatggaagcaacctcagggaacaataaaccttatgactgcaga
cttgattctttctgcacagacaaactctgtgagggtcatgggtctgtgcg
ttggtactgagaaactcatgtcaacagtgctgaaagtctgccttcataaa
ccgttaggaacaggatgatgaataatcacttaacctctgtaagctagctc
agtgacatggttttatgaaaattatgaagccccagttcactcagtgggtt
actgtaagaaaataatataaatcttttagcaaagggaaaaatccatgggg
ttactatggcaagctggcaactccaggctgagcaccgtctgagcaccgtg
ttaaagacaggaccctcttcatcttcagtgtgaggaatcaagcaagcatg
tgttgattctcatcaagcaaaatgatgaagtcacacatgaactctgttgg
ccttgtcacataactgtgtaacatattaatattggacattgattaaaaaa
actagtaagtctgatgaataaaaattatcacaaaatataagacattgaat
tatctgaatagtgactttcacacccacactcagaattaatgtcattttca
aatgttcgtgactaatagaagcaatttggaaacctaagcaaaaaaaacca
ctcattttttaaagtggacatccatgtaactacaatttttaactaaaatt
tcatagtgattgacggttaccttctcaccccagctgaaaagtgacatctg
atgatgcaacagcatccatggagactttgtagggcttcctagacagactg
attcatgtttcaacatgaatggattgtccgagttactctttgctttacca
gaggactactgctgctatcaaagaagtagaatgggacctctgtgccctta
tatcatggcaaatgagcacttctagttgatcctcagaaacccatttgatc
ccacatatatcatatctgagaacatcattcatctttcagaaacttgagta
acacttgtaagcatccacccttctgctctccagaaggagaatttctgttc
atgattggctccaattgcctctgaaaagcttcagtgaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28136166_28137308
seq2: B6Ng01-261A14.g_66_1206

seq1  GAATTCTGAAGGTCTCTCTTATCTTGTACCAAAGACAAATTGTTGCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGGTCTCTCTTATCTTGTACCAAAGACAAATTGTTGCTCTG  50

seq1  TAAAAGAAATGGAAGCAACCTCAGGGAACAATAAACCTTATGACTGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAATGGAAGCAACCTCAGGGAACAATAAACCTTATGACTGCAGA  100

seq1  CTTGATTCTTTCTGCACAGACAAACTCTGTGAGGGTCATGGGTCTGTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTCTTTCTGCACAGACAAACTCTGTGAGGGTCATGGGTCTGTGCG  150

seq1  TTGGTACTGAGAAACTCATGTCAACAGTGCTGAAAGTCTGCCTTCATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACTGAGAAACTCATGTCAACAGTGCTGAAAGTCTGCCTTCATAAA  200

seq1  CCGTTAGGAACAGGATGATGAATAATCACTTAACCTCTGTAAGCTAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTAGGAACAGGATGATGAATAATCACTTAACCTCTGTAAGCTAGCTC  250

seq1  AGTGACATGGTTTTATGAAAATTATGAAGCCCCAGTTCACTCAGTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATGGTTTTATGAAAATTATGAAGCCCCAGTTCACTCAGTGGGTT  300

seq1  ACTGTAAGAAAATAATATAAATCTTTTAGCAAAGGGAAAAATCCATGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGAAAATAATATAAATCTTTTAGCAAAGGGAAAAATCCATGGGG  350

seq1  TTACTATGGCAAGCTGGCAACTCCAGGCTGAGCACCGTCTGAGCACCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGGCAAGCTGGCAACTCCAGGCTGAGCACCGTCTGAGCACCGTG  400

seq1  TTAAAGACAGGACCCTCTTCATCTTCAGTGTGAGGAATCAAGCAAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACAGGACCCTCTTCATCTTCAGTGTGAGGAATCAAGCAAGCATG  450

seq1  TGTTGATTCTCATCAAGCAAAATGATGAAGTCACACATGAACTCTGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATTCTCATCAAGCAAAATGATGAAGTCACACATGAACTCTGTTGG  500

seq1  CCTTGTCACATAACTGTGTAACATATTAATATTGGACATTGATTAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCACATAACTGTGTAACATATTAATATTGGACATTGATTAAAAAA  550

seq1  ACTAGTAAGTCTGATGAATAAAAATTATCACAAAATATAAGACATTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTAAGTCTGATGAATAAAAATTATCACAAAATATAAGACATTGAAT  600

seq1  TATCTGAATAGTGACTTTCACACCCACACTCAGAATTAATGTCATTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAATAGTGACTTTCACACCCACACTCAGAATTAATGTCATTTTCA  650

seq1  AATGTTCGTGACTAATAGAAGCAATTTGGAAACCTAAGCAAAAAAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCGTGACTAATAGAAGCAATTTGGAAACCTAAGCAAAAAAAACCA  700

seq1  CTCATTTTTTAAAGTGGACATCCATGTAACTACAATTTTTAACTAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTTAAAGTGGACATCCATGTAACTACAATTTTTAACTAAAATT  750

seq1  TCATAGTGATTGACGGTTACCTTCTCACCCCAGCTGAAAAGTGACATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGATTGACGGTTACCTTCTCACCCCAGCTGAAAAGTGACATCTG  800

seq1  ATGATGCAACAGCATCCATGGAGACTTTGTAGGGCTTCCTAGACAGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCAACAGCATCCATGGAGACTTTGTAGGGCTTCCTAGACAGACTG  850

seq1  ATTCATGTTTCAACATGAATGGATTGTCCGAGTTACTCTTTGCTTTACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTTTCAACATGAATGGATTGTCCGAGTTACTCTTTGCTTTACCA  900

seq1  GAGGACTACTGCTGCTATCAAAGAAGTAGAATGGGACCTCTGTGCCCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTACTGCTGCTATCAAAGAAGTAGAATGGGACCTCTGTGCCCTTA  950

seq1  TATCATGGCAAATGAGCACTTCTAGTTGATCCTCAGAAACCCATTTGATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGGCAAATGAGCACTTCTAGTTGATCCTCAGAAACCCATTTGATC  1000

seq1  CCACATATATCATATCTGAGAACATCATTCATCTTTCAGAAACTTTGAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCACATATATCATATCTGAGAACATCATTCATCTTTCAGAAAC-TTGAGT  1049

seq1  -ACACTTGTAAGCATCCACCTCTTGCTTCTTCCCAGAAGGAGATTTCCTG  1099
       ||||||||||||||||||| ||| || ||  ||||||||||| || |||
seq2  AACACTTGTAAGCATCCACC-CTT-CTGCTCTCCAGAAGGAGAATTTCTG  1097

seq1  TCAATGATTGGGCTCC-ATTG-CTCTGAAAAGCTTCAGTAGAATGA  1143
      |  |||||| |||||| |||| ||||||||||||||||| ||||||
seq2  TTCATGATT-GGCTCCAATTGCCTCTGAAAAGCTTCAGT-GAATGA  1141