BAC Information

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BAC

Clone NameB6Ng01-261E10
Chromosome13 (Build37)
Map Location 86,714,759 - 86,852,930
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261E10.bB6Ng01-261E10.g
ACCGA065987GA065988
length1,1701,139
definitionB6Ng01-261E10.b B6Ng01-261E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,851,773 - 86,852,930)(86,714,759 - 86,715,905)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttttctcgtcccggaattcggcaccaattgttatta
gacgcgttctcacgaccggccaggaagaacaccacagaccagaatcttct
gcggcaaagctttattgcttacatcttcaggagccagagtgcaagaagca
agagagagcgagaagcaagagagagagaaaacgaaaccccgtccctatta
aagagaattctccttcgcctaggacgtgtcactccctgattggctgcagc
ccatcggccgagttgacgtcacggggaaggcagagcacatggagtgaaga
accaccctcggcacatgcgcagattatttgtttaccacttagaacacagc
tgtcagcgccatcttgtaacggcgaatgtgggcgcggctcccaacaataa
accatagagtagaacctattacaggaaacatctcttatacaaaggaatta
gaattaggtagaagtaggttgaaggacagataaacatgttttgaattata
gttaatagctaacttctagatgggaaaatatccttgcaaatttggtggat
ggaagttttagacttcattaatacaatagttagagagttacatacaacat
agagcatgaaagaaaggaaaccttgattacattactagcattgaaataaa
tcattaggtttatcggctggtttccttggaagatgagaaaaaagaaagag
catggatttcctgtaaacaagatagaactatctcagctatcttattgaaa
aactatatctactgtcttacatgtaaaacttaggtcttttgggctatttt
tgattaattttagctgctatgatatgagaaggcttttaatttcttcctgg
caagatatccatataacaaacctgcttttggccaaaattccaaatgaatc
attagcctgattttcaccaaacctttagtgtagactgtacttacagtgtc
aaatgcagaataacataattaaagcactgttaggtacattttaattgcaa
gcaccataagttatgtttggtagtgtttgccgcaacaggagctttgctac
attattatccatgttgtgct

gaattctttttcttttcctttttaaatttggacccttcttgaagtaggaa
taagaaacacagccctgaaaaccaaaggtgattgaaactatacctaagtc
aaatagtcatgaaaatctagaggtcaactctttgttttaaaataatcata
tgtagttttattaatacatattcatttgaacttttatgtatatttatcat
tattttagtgtataaaactagcatatcaaacaagaaaaaagtctagcaat
tagtttcaaatctcagatatcattataatatactacttctcaccagatct
tcatagtattcttcacagtactgttgcagtttttaaggaataatgtgaca
tacttatgaatcattatacaaatggttccatggtgggtttatgcatagac
cttcataaaagtaatattcattgcaaaaacacttcctctaggttttcttt
tagagaatgttaagacttactataaagtgagggaaggtcctatttgccat
taataatttcataagtccttatctgaaatctaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaagagctagtatcattgacgctaaagaagcaataatgatac
agaatcaatcccagagccattgctgccttttattctcatcagctttgttc
aagcttagggataattgaagcttatatatgatgctagggaggatgacaat
attcacaatattgatcctacattcccaaaaagattgaatgattttctatc
ttccgttatcttgttcagtctcttacttcaaagttgtaaaattttgatag
tgtgagtcctatgatatattagtgcaagagagatttattttattcttttt
ttctttttttattacatattttcctcaattacatttccaatgctatccca
gaagtcccgcatacccttgccccccaccccacctattccgattttttggc
cctggcattcccctgtactggggaatattaaagttgcctgtccaatgggg
cctctctttcagtgatggctgactaggtcatcttttgaaacaattatgca
gctaagaagtcaagagagcttcggtactgtaggtcataattggtctacta
ccggtgcgcactctttagctcctgatactctagctcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_86851773_86852930
seq2: B6Ng01-261E10.b_48_1217 (reverse)

seq1  AGCACAACATTGAATTATTTAATTGTAGCAAAACTCTGTTTGCGGC-AAC  49
      |||||||||| ||  || |  | ||||||||| |||   ||||||| |||
seq2  AGCACAACATGGA--TAAT--AATGTAGCAAAGCTCCTGTTGCGGCAAAC  46

seq1  ACTAC--AACATTAACCTTATGTGCCTTGC-ATTAAAATGTA-CTAACAG  95
      |||||  |||||  | ||||||   ||||| ||||||||||| |||||||
seq2  ACTACCAAACAT--AACTTATGGTGCTTGCAATTAAAATGTACCTAACAG  94

seq1  TGCTTTAA-TATG-TATTCTGCA-TTGACACTGTAAGTACAGTCTACACT  142
      |||||||| |||| ||||||||| ||||||||||||||||||||||||||
seq2  TGCTTTAATTATGTTATTCTGCATTTGACACTGTAAGTACAGTCTACACT  144

seq1  AAAG--TTTGTGAAAATCA-GCTAATGATTCATTT-GAATTTTG--CCAA  186
      ||||  || |||||||||| ||||||||||||||| ||||||||  | ||
seq2  AAAGGTTTGGTGAAAATCAGGCTAATGATTCATTTGGAATTTTGGCCAAA  194

seq1  AGCA-GTTTGTTATATGGATATCTTGCCAGG-AGAA--TTAAAGCCTTCT  232
      |||| |||||||||||||||||||||||||| ||||  | ||||||||||
seq2  AGCAGGTTTGTTATATGGATATCTTGCCAGGAAGAAATTAAAAGCCTTCT  244

seq1  CATATCATAGCAGCTAAAATTAATCAAAAATAGCCCAAAAGACCTAAGTT  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATAGCAGCTAAAATTAATCAAAAATAGCCCAAAAGACCTAAGTT  294

seq1  TTACATGTAAGACAGTAGATATAGTTTTTCAATAAGATAGCTGAGATAGT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTAAGACAGTAGATATAGTTTTTCAATAAGATAGCTGAGATAGT  344

seq1  TCTATCTTGTTTACAGGAAATCCATGCTCTTTCTTTTTTCTCATCTTCCA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTGTTTACAGGAAATCCATGCTCTTTCTTTTTTCTCATCTTCCA  394

seq1  AGGAAACCAGCCGATAAACCTAATGATTTATTTCAATGCTAGTAATGTAA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCAGCCGATAAACCTAATGATTTATTTCAATGCTAGTAATGTAA  444

seq1  TCAAGGTTTCCTTTCTTTCATGCTCTATGTTGTATGTAACTCTCTAACTA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTTCCTTTCTTTCATGCTCTATGTTGTATGTAACTCTCTAACTA  494

seq1  TTGTATTAATGAAGTCTAAAACTTCCATCCACCAAATTTGCAAGGATATT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAATGAAGTCTAAAACTTCCATCCACCAAATTTGCAAGGATATT  544

seq1  TTCCCATCTAGAAGTTAGCTATTAACTATAATTCAAAACATGTTTATCTG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTAGAAGTTAGCTATTAACTATAATTCAAAACATGTTTATCTG  594

seq1  TCCTTCAACCTACTTCTACCTAATTCTAATTCCTTTGTATAAGAGATGTT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAACCTACTTCTACCTAATTCTAATTCCTTTGTATAAGAGATGTT  644

seq1  TCCTGTAATAGGTTCTACTCTATGGTTTATTGTTGGGAGCCGCGCCCACA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAATAGGTTCTACTCTATGGTTTATTGTTGGGAGCCGCGCCCACA  694

seq1  TTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAA  744

seq1  TAATCTGCGCATGTGCCGAGGGTGGTTCTTCACTCCATGTGCTCTGCCTT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGCGCATGTGCCGAGGGTGGTTCTTCACTCCATGTGCTCTGCCTT  794

seq1  CCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACA  844

seq1  CGTCCTAGGCGAAGGAGAATTCTCTTTAATAGGGACGGGGTTTCGTTTTC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTAGGCGAAGGAGAATTCTCTTTAATAGGGACGGGGTTTCGTTTTC  894

seq1  TCTCTCTCTTGCTTCTCGCTCTCTCTTGCTTCTTGCACTCTGGCTCCTGA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTGCTTCTCGCTCTCTCTTGCTTCTTGCACTCTGGCTCCTGA  944

seq1  AGATGTAAGCAATAAAGCTTTGCCGCAGAAGATTCTGGTCTGTGGTGTTC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAGCAATAAAGCTTTGCCGCAGAAGATTCTGGTCTGTGGTGTTC  994

seq1  TTCCTGGCCGGTCGTGAGAACGCGTCTAATAACAATTGGTGCCGAATTCC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCCGGTCGTGAGAACGCGTCTAATAACAATTGGTGCCGAATTCC  1044

seq1  GGGACGAGAAAAAAAACTCGGGACTGGCGCAAGGAAGATCCCTCATTCCA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGAGAAAAAAAACTCGGGACTGGCGCAAGGAAGATCCCTCATTCCA  1094

seq1  GAACCAGAACTGCGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACTGT  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAACTGCGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACTGT  1144

seq1  TAAGAAGGATTCAACTGTATGAATTC  1158
      ||||||||||||||||||||||||||
seq2  TAAGAAGGATTCAACTGTATGAATTC  1170


seq1: chr13_86714759_86715905
seq2: B6Ng01-261E10.g_64_1202

seq1  GAATTCTTTTTCTTTTCCTTTTTAAATTTGGACCCTTCTTGAAGTAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTTTTCCTTTTTAAATTTGGACCCTTCTTGAAGTAGGAA  50

seq1  TAAGAAACACAGCCCTGAAAACCAAAGGTGATTGAAACTATACCTAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACACAGCCCTGAAAACCAAAGGTGATTGAAACTATACCTAAGTC  100

seq1  AAATAGTCATGAAAATCTAGAGGTCAACTCTTTGTTTTAAAATAATCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCATGAAAATCTAGAGGTCAACTCTTTGTTTTAAAATAATCATA  150

seq1  TGTAGTTTTATTAATACATATTCATTTGAACTTTTATGTATATTTATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTTATTAATACATATTCATTTGAACTTTTATGTATATTTATCAT  200

seq1  TATTTTAGTGTATAAAACTAGCATATCAAACAAGAAAAAAGTCTAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGTGTATAAAACTAGCATATCAAACAAGAAAAAAGTCTAGCAAT  250

seq1  TAGTTTCAAATCTCAGATATCATTATAATATACTACTTCTCACCAGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCAAATCTCAGATATCATTATAATATACTACTTCTCACCAGATCT  300

seq1  TCATAGTATTCTTCACAGTACTGTTGCAGTTTTTAAGGAATAATGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTATTCTTCACAGTACTGTTGCAGTTTTTAAGGAATAATGTGACA  350

seq1  TACTTATGAATCATTATACAAATGGTTCCATGGTGGGTTTATGCATAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATGAATCATTATACAAATGGTTCCATGGTGGGTTTATGCATAGAC  400

seq1  CTTCATAAAAGTAATATTCATTGCAAAAACACTTCCTCTAGGTTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAAAAGTAATATTCATTGCAAAAACACTTCCTCTAGGTTTTCTTT  450

seq1  TAGAGAATGTTAAGACTTACTATAAAGTGAGGGAAGGTCCTATTTGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATGTTAAGACTTACTATAAAGTGAGGGAAGGTCCTATTTGCCAT  500

seq1  TAATAATTTCATAAGTCCTTATCTGAAATCTAAAAAAAAAAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTTCATAAGTCCTTATCTGAAATCTAAAAAAAAAAAAAAAAAAA  550

seq1  AAAAAAAAAAAGAGCTAGTATCATTGACGCTAAAGAAGCAATAATGATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGAGCTAGTATCATTGACGCTAAAGAAGCAATAATGATAC  600

seq1  AGAATCAATCCCAGAGCCATTGCTGCCTTTTATTCTCATCAGCTTTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAATCCCAGAGCCATTGCTGCCTTTTATTCTCATCAGCTTTGTTC  650

seq1  AAGCTTAGGGATAATTGAAGCTTATATATGATGCTAGGGAGGATGACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAGGGATAATTGAAGCTTATATATGATGCTAGGGAGGATGACAAT  700

seq1  ATTCACAATATTGATCCTACATTCCCAAAAAGATTGAATGATTTTCTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAATATTGATCCTACATTCCCAAAAAGATTGAATGATTTTCTATC  750

seq1  TTCCGTTATCTTGTTCAGTCTCTTACTTCAAAGTTGTAAAATTTTGATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTTATCTTGTTCAGTCTCTTACTTCAAAGTTGTAAAATTTTGATAG  800

seq1  TGTGAGTCCTATGATATATTAGTGCAAGAGAGATTTATTTTATTCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCCTATGATATATTAGTGCAAGAGAGATTTATTTTATTCTTTTT  850

seq1  TTCTTTTTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCC  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTC-TTTTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCC  899

seq1  AGAAGTCCCGCATACCCTTGCCCCCCACCCCACCTATTCCGATTTTTTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCCGCATACCCTTGCCCCCCACCCCACCTATTCCGATTTTTTGG  949

seq1  CCCTGGCATTCCCCTGTACTGGGGAATATAAAGTTTGCCTGTCCAAT-GG  999
      ||||||||||||||||||||||||||||| ||  ||||||||||||| ||
seq2  CCCTGGCATTCCCCTGTACTGGGGAATATTAAAGTTGCCTGTCCAATGGG  999

seq1  GCCTCTCTTTTCAGTGATGGCTGACTAGGTCATCTTTTGATACA--TATG  1047
      ||||||| |||||||||||||||||||||||||||||||| |||  ||||
seq2  GCCTCTC-TTTCAGTGATGGCTGACTAGGTCATCTTTTGAAACAATTATG  1048

seq1  CAGCTA--GAGTCA--AGAGCTTCGGGGTACTGGTTAGTTCATAA-TGGT  1092
      ||||||   |||||  ||||||||  |||||||  ||| |||||| ||||
seq2  CAGCTAAGAAGTCAAGAGAGCTTC--GGTACTG--TAGGTCATAATTGGT  1094

seq1  CTACCTACAGGGTTGCCGCACTCTTTAGCTCCTTGGATACTTTCTCTAGC  1142
      ||| |||| ||  || |||||||||||||||||  ||||    |||||||
seq2  CTA-CTACCGG--TG-CGCACTCTTTAGCTCCT--GATA----CTCTAGC  1134

seq1  TCCTC  1147
      |||||
seq2  TCCTC  1139


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