BAC Information

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BAC

Clone NameB6Ng01-261H03
Chromosome13 (Build37)
Map Location 42,256,297 - 42,257,477
singlet/doubletsinglet
Overlap geneHivep1
Upstream geneLOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272
Downstream geneEdn1, Hn1-ps4, Phactr1, Tbc1d7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261H03.bB6Ng01-261H03.g
ACCGA066113GA066114
length1,17489
definitionB6Ng01-261H03.b B6Ng01-261H03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctttagatttgttggctttataaactaggggaaatcatttaaa
tcaaataaataagggcattattttagactctgttcattcagaattattga
ttagctttttgatgtctgcaggttcacaagcacatagttctgatccagag
gcatttatggatctaaccacatgaactattgtggggctagcattacagtg
ggggtctgcaaggctctaacatggctgttctgtggagttttggatacggg
aaggcactccacagtggtagtcagcagagttagtggtgataatagcaata
acaggtattttagataaatgaattttctttaaattagtagatctttaatt
catgtgaaaataagaaaaattgggtttaattaagaagactacagggactc
tggcagagacagaaggttttgtaaggagttagaagttggcaacctgagtg
acctggtggtggagaacctgtgtcagggaagaaaggggcatccaacgaca
tgggaattttgttatttctaacttcccagaacccaggactcctaaattgg
ttgggccatgcctcctcatgagaacataaggagatgttggtttatatccc
taattttcctataaacatgggtctcccaggcctcaaatgtaattcagcgc
taagcatgtgagggtcttcccttccatccccagaacccaaggagaaagtt
aaaaagccttaagtattgagtgcaagtaccgggtgccgtggaagaagccc
tggcagtactgagtactggtgctgtgtactcagcttcagcaatcaggaga
gggctgcaggtggaaggtctgtccaggggtttgtcagcatgcaggaatga
ctgagactgctcagagaggagaatggagagaagatggaggagtctacttg
ggaaacagaaagaaatttcttcctagaaaggaggagagccctagtagcac
catagtagcaagcacaactcagaaggtcgtggctcaagagttgttagatt
agtgctgtcataataaaaatgaggtgagagtctctgctctgctcattttg
tcacctgggagacttgaatccatgacagtggcttaggaggttgggacact
agcagactgtgtctataaccatattggatatcatggctcagaattggaag
acaggaagacggtctactgtgaaa
aagagttgggaggtgagagtgggtggctgggtaggggaacaccttcacag
aagcaggggaaggggtgggataaggggtttgtgggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_42256297_42257477
seq2: B6Ng01-261H03.b_43_1216

seq1  GAATTCTCTTTAGATTTGTTGGCTTTATAAACTAGGGGAAATCATTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAGATTTGTTGGCTTTATAAACTAGGGGAAATCATTTAAA  50

seq1  TCAAATAAATAAGGGCATTATTTTAGACTCTGTTCATTCAGAATTATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAAATAAGGGCATTATTTTAGACTCTGTTCATTCAGAATTATTGA  100

seq1  TTAGCTTTTTGATGTCTGCAGGTTCACAAGCACATAGTTCTGATCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTTTGATGTCTGCAGGTTCACAAGCACATAGTTCTGATCCAGAG  150

seq1  GCATTTATGGATCTAACCACATGAACTATTGTGGGGCTAGCATTACAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATGGATCTAACCACATGAACTATTGTGGGGCTAGCATTACAGTG  200

seq1  GGGGTCTGCAAGGCTCTAACATGGCTGTTCTGTGGAGTTTTGGATACGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTGCAAGGCTCTAACATGGCTGTTCTGTGGAGTTTTGGATACGGG  250

seq1  AAGGCACTCCACAGTGGTAGTCAGCAGAGTTAGTGGTGATAATAGCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTCCACAGTGGTAGTCAGCAGAGTTAGTGGTGATAATAGCAATA  300

seq1  ACAGGTATTTTAGATAAATGAATTTTCTTTAAATTAGTAGATCTTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTATTTTAGATAAATGAATTTTCTTTAAATTAGTAGATCTTTAATT  350

seq1  CATGTGAAAATAAGAAAAATTGGGTTTAATTAAGAAGACTACAGGGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAAAATAAGAAAAATTGGGTTTAATTAAGAAGACTACAGGGACTC  400

seq1  TGGCAGAGACAGAAGGTTTTGTAAGGAGTTAGAAGTTGGCAACCTGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGACAGAAGGTTTTGTAAGGAGTTAGAAGTTGGCAACCTGAGTG  450

seq1  ACCTGGTGGTGGAGAACCTGTGTCAGGGAAGAAAGGGGCATCCAACGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGGTGGAGAACCTGTGTCAGGGAAGAAAGGGGCATCCAACGACA  500

seq1  TGGGAATTTTGTTATTTCTAACTTCCCAGAACCCAGGACTCCTAAATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTTTGTTATTTCTAACTTCCCAGAACCCAGGACTCCTAAATTGG  550

seq1  TTGGGCCATGCCTCCTCATGAGAACATAAGGAGATGTTGGTTTATATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCATGCCTCCTCATGAGAACATAAGGAGATGTTGGTTTATATCCC  600

seq1  TAATTTTCCTATAAACATGGGTCTCCCAGGCCTCAAATGTAATTCAGCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCTATAAACATGGGTCTCCCAGGCCTCAAATGTAATTCAGCGC  650

seq1  TAAGCATGTGAGGGTCTTCCCTTCCATCCCCAGAACCCAAGGAGAAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGTGAGGGTCTTCCCTTCCATCCCCAGAACCCAAGGAGAAAGTT  700

seq1  AAAAAGCCTTAAGTATTGAGTGCAAGTACCGGGTGCCGTGGAAGAAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCTTAAGTATTGAGTGCAAGTACCGGGTGCCGTGGAAGAAGCCC  750

seq1  TGGCAGTACTGAGTACTGGTGCTGTGTACTCAGCTTCAGCAATCAGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTACTGAGTACTGGTGCTGTGTACTCAGCTTCAGCAATCAGGAGA  800

seq1  GGGCTGCAGGTGGAAGGTCTGTCCAGGGGTTTGTCAGCATGCAGGAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCAGGTGGAAGGTCTGTCCAGGGGTTTGTCAGCATGCAGGAATGA  850

seq1  CTGAGACTGCTCAGAGAGGAGAATGGAGAGAAGATGGAGGAGTCTACTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTGCTCAGAGAGGAGAATGGAGAGAAGATGGAGGAGTCTACTTG  900

seq1  GGAAACAGAAAGAAA-TTCTTCCTAG-AAGGAGGAGAGCCCTAGTAGCAC  948
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  GGAAACAGAAAGAAATTTCTTCCTAGAAAGGAGGAGAGCCCTAGTAGCAC  950

seq1  CATAGTAGCAAGCACAACTCAGAAGGTCGTGGCTCAAGAGTTGTTAAGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATAGTAGCAAGCACAACTCAGAAGGTCGTGGCTCAAGAGTTGTT-AGAT  999

seq1  TAGTGCTGTCAT-ATAAAAATGAGGTGAGAGTCTCTGCTCTGCTCATTTT  1047
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTGTCATAATAAAAATGAGGTGAGAGTCTCTGCTCTGCTCATTTT  1049

seq1  GTCAC--TGGAGACTTGAATCCATGAACAAGTGGCTTAGGAGGTTGGGAC  1095
      |||||   ||||||||||||||||||   |||||||||||||||||||||
seq2  GTCACCTGGGAGACTTGAATCCATGA--CAGTGGCTTAGGAGGTTGGGAC  1097

seq1  ACCTAGCAGACTGTTGTCTATAACCCATATGGGAATAAATCCATGGCTCA  1145
      | ||||||||||| ||||||||| |||||| || |||    |||||||||
seq2  A-CTAGCAGACTG-TGTCTATAA-CCATATTGG-ATA---TCATGGCTCA  1140

seq1  GAATGGAAAGGAGCAGGAAGACAGTCTACTGTGAAA  1181
      |||| | |||   ||||||||| |||||||||||||
seq2  GAATTGGAAG--ACAGGAAGACGGTCTACTGTGAAA  1174