BAC Information

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BAC

Clone NameB6Ng01-262G12
Chromosome13 (Build37)
Map Location 21,625,241 - 21,626,186
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192
Downstream geneOlfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262G12.bB6Ng01-262G12.g
ACCGA066829GA066830
length1,082618
definitionB6Ng01-262G12.b B6Ng01-262G12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ggaattctgtcttaatcacaaaccaaaactaatttgatgatttagttttt
cttcttgacaggtttcataaagtccaaactgccttcaacctatgtttctg
aggatgaccttgaactcttcacatacttctaccttgacctcccaagtgtt
gggattacaggtgcgactcactgtgtctggctaacttaacaatttcttaa
aaaaatgaaactcaagtcagaaactcaagcagaaattaaaaatatcaaac
attctaacatgatacaatcagagatatgccagtatctgtgatttgataca
tgctgagaaacaatggtaggaacatctaaaaaatattttgttttccataa
ttaaattgtctttgtatgaaagcagaaaagtttgtacagtagaaactctg
agatccataagattcgatagtcttattttggaactgagttattttaggtg
gcatttgttgttattacttggcttaatggcaaatacaacatgaagtgctc
atgttatgtgttgagaagcacacctatagtgaagtcacatgttacaacac
agtcattgctgccagaaatgtctgggattcattagatattaggtctagaa
atttcacttgttacatgtttataagccttttgggttgtaatattggatct
atttgaatacatacttttgtacttttgtgggggaggggtcttgctttttg
agacagtgtcatactctatgtttctcacactggcacacaactcatgatct
ccctgccttgtcttctggcatgctacaatcgcaggtttggttcaccgtgc
ttgcctgcttgtacttttactagtgccaagtcactaaccatgaaatccac
tggcaacctttcttgcttgcctgtatctgtcaactcaatgatattatatt
ttttttcctttaacaatccaatagtggaaaaaaaaacaaacctgtcttga
ctttgtcttcccttttccactttttgctacaaatattatttaatgcctta
tatgcccacactatttctgaaagtagagctaggtttggagtagagccata
tctgctttatttttcatggaatttataattgg
gaattcctgatctttccaagacttttaacatgaaggggtgttgaattttg
tcaaatgctttttcagcatctaatgaaatgatcatatggttgtttttctt
tgagtttgtttatgtagtggattaaattgatggatttccatatattagac
catccctgcatccctaggatgaagcctacttgatcatggtaaatgaacgt
tttgatgtgttcttggatttggtttatgagaattttattgagtatttttg
catcaatatttataagagaaattggtatggagttctctttctttgttggg
tttttgtgtggttttggtatcagtgaaactacagcttcatagaatgaatt
gggtagtgttgcttctgtttctattttatggaataatttgaagagtattg
gcattaggttttctttgaaggtctgatagaattctgaactaaactcatct
tgtcctggttttttgtttgtttgtttgtttgtttgttttttgtttttttt
tggggggaggactttttcatgattgcttttaggggttataggactgttta
gatggtttatcggatacttgatttatctttggtagctggtatctgtctaa
aaaaattgtccatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21625241_21626186
seq2: B6Ng01-262G12.b_176_1125

seq1  CCTTGACCTCCCAAGTGTTGGGATTACAGGTGCGACTCACTGTGTCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACCTCCCAAGTGTTGGGATTACAGGTGCGACTCACTGTGTCTGGC  50

seq1  TAACTTAACAATTTCTTAAAAAAATGAAACTCAAGTCAGAAACTCAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAACAATTTCTTAAAAAAATGAAACTCAAGTCAGAAACTCAAGCA  100

seq1  GAAATTAAAAATATCAAACATTCTAACATGATACAATCAGAGATATGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAAATATCAAACATTCTAACATGATACAATCAGAGATATGCCA  150

seq1  GTATCTGTGATTTGATACATGCTGAGAAACAATGGTAGGAACATCTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGTGATTTGATACATGCTGAGAAACAATGGTAGGAACATCTAAAA  200

seq1  AATATTTTGTTTTCCATAATTAAATTGTCTTTGTATGAAAGCAGAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTGTTTTCCATAATTAAATTGTCTTTGTATGAAAGCAGAAAAGT  250

seq1  TTGTACAGTAGAAACTCTGAGATCCATAAGATTCGATAGTCTTATTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGTAGAAACTCTGAGATCCATAAGATTCGATAGTCTTATTTTGG  300

seq1  AACTGAGTTATTTTAGGTGGCATTTGTTGTTATTACTTGGCTTAATGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTTATTTTAGGTGGCATTTGTTGTTATTACTTGGCTTAATGGCA  350

seq1  AATACAACATGAAGTGCTCATGTTATGTGTTGAGAAGCACACCTATAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACATGAAGTGCTCATGTTATGTGTTGAGAAGCACACCTATAGTG  400

seq1  AAGTCACATGTTACAACACAGTCATTGCTGCCAGAAATGTCTGGGATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACATGTTACAACACAGTCATTGCTGCCAGAAATGTCTGGGATTCA  450

seq1  TTAGATATTAGGTCTAGAAATTTCACTTGTTACATGTTTATAAGCCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATTAGGTCTAGAAATTTCACTTGTTACATGTTTATAAGCCTTTT  500

seq1  GGGTTGTAATATTGGATCTATTTGAATACATACTTTTGTACTTTTGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTAATATTGGATCTATTTGAATACATACTTTTGTACTTTTGTGGG  550

seq1  GGAGGGGTCTTGCTTTTTGAGACAGTGTCATACTCTATGTTTCTCACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGTCTTGCTTTTTGAGACAGTGTCATACTCTATGTTTCTCACACT  600

seq1  GGCACACAACTCATGATCTCCCTGCCTTGTCTTCTGGCATGCTACAATCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACAACTCATGATCTCCCTGCCTTGTCTTCTGGCATGCTACAATCG  650

seq1  CAGGTTTGGTTCACCGTGCTTGCCTGCTTGTACTTTTACTAGTGCCAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTGGTTCACCGTGCTTGCCTGCTTGTACTTTTACTAGTGCCAAGT  700

seq1  CACTAACCATGAAATCCACTGGCAACC-TTCTTGCTTGCCTGTATCTGTC  749
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACTAACCATGAAATCCACTGGCAACCTTTCTTGCTTGCCTGTATCTGTC  750

seq1  AACTCAATGATATTATA-TTTTTTTCCTTTAACAATCCAATAGTGGAAAA  798
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACTCAATGATATTATATTTTTTTTCCTTTAACAATCCAATAGTGGAAAA  800

seq1  AAAAACAAACCTGTCTTGACTTTGTCTTCCCTTTTCCACTTTTTGCTACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACCTGTCTTGACTTTGTCTTCCCTTTTCCACTTTTTGCTACA  850

seq1  AATATTATTTAATGCCTTATATGCCCAACACTA-TTCTGAAAAGTAGAGC  897
      |||||||||||||||||||||||||| |||||| ||||| ||||||||||
seq2  AATATTATTTAATGCCTTATATGCCC-ACACTATTTCTG-AAAGTAGAGC  898

seq1  TA-GTTTTGAGTAGAGCAATATCTGCTT--ATTTTCATGGAATTTATAAT  944
      || |||| ||||||||| ||||||||||   |||||||||||||||||||
seq2  TAGGTTTGGAGTAGAGCCATATCTGCTTTATTTTTCATGGAATTTATAAT  948

seq1  TG  946
      ||
seq2  TG  950