BAC Information

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BAC

Clone NameB6Ng01-262I21
Chromosome13 (Build37)
Map Location 24,145,367 - 24,277,342
singlet/doubletdoublet
Overlap geneLrrc16
Upstream geneV1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262I21.bB6Ng01-262I21.g
ACCGA066940GA066941
length1,1871,160
definitionB6Ng01-262I21.b B6Ng01-262I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,145,367 - 24,146,547)(24,276,187 - 24,277,342)
sequence
gaattctagtaaatgaatgagtgagtcgaatcattatttcaacccaacgc
aactgttcgtactacaggcactggtaccaagaggagcattctgcacacag
gcaggatagtgaggactcaacctactgtgaagaagaattctttcaggact
gagtcacggctcagtgggtgagcacttgcctagcatgtgcaaggcgcaga
ctccagcactgtccagcattgaggaagaaacaacatgacagaaaacccaa
aacaaaagaaaaaaaagtgaacgaacttttaagttagatacgatcactta
actccaacacttttatgtttttgtctcacacttgtataattaagttttct
gtacagactcacatggttcataaactggaatccacttctttggacattaa
actcttcaaatgtatatatctactttcctcttcaactacttaagtacttt
caatcttataaaaagaggggtaatcagtacaagactcttctctcatgttc
agcaggccacatgctggcactccagggtacttgacttccttctgttggta
ctctgtctggactctacccctacagttacctggcaacagccaggtaggcc
tggccccctataaaaggggctgcttgcctcttcctctctctcttactctt
gctttcttgcctcttgcctccttgttcccccactccactcgtcagcctct
acttctctactctttccctctctctgcctttctcagcctctactaccctc
ttaactcccctcccatgccctaaataaactctattctatgctatagcatc
atgtggctggtccctcagggagaagggctgtctcagcacacctccatagg
acacattcttatactctttatctgtccctcccccctttacacatataaat
tatgttggaactatctattgcatttattattgttgtttgtgtgtgtgtgt
gcatgcatatgatcatgtgctctagtgcatgcatacatgccatggcacaa
tgggtggaggtcaaatatcaacctgcaaggagtcaattcctctccttctt
ccaatgtggcatgtgatggaatctcagattgtcagcttggccagtaagca
accttcacctggctgaattctcttgcatgtagaaatccatttgaaagcta
attaacgttccatatttcttccttatgttaccctcta
gaattcaagcaccacagctagtaaacagaagggaaatcttagaggtttgg
agtttgaagtaataactagcccaggctagggtgtggtggaatggttacga
gggtccagctgtggaacgataacctgatagaagctctggggagtgtgaca
tggcatcatattttgaacactttgtgttcattcttatgacagcctgattg
aggtatacagtgtggtccttagttctacagatgaggaaagcggggcacag
agataatgctgagggccttgcgcttgttggacaattgcagtaccactgag
ctaagtccccaaccctgagataatacttctgaaagtcccatgcttgtaag
gttttgtagtgagtcagaatggtgatcgatcttcagaaagtagtatcata
agtatggaggcaccgttgttcccaatgatagaagtggggccatgtaggaa
gagtggagccaggtcttggtaccacacgtgaagtcagctgaaagtgcctg
gtttttagtgctctagttgggttaattcttccacctgtcctaaaggccat
gccaaaggcaagtcaaagtcaagagaatgagaaagtggtttggtaagaag
ttaccaggagaatttaacttggtctggatctcaccccatccctttttgtt
gctggctgccactgtgtcccctcactccttatttctcccttctgcaatta
gtgcatattgtcattctccctgcccctctagtcacagtaatgttaaatgt
agtttgggctgtctgctctgtgccacctgcacttttgcagagcgggaggc
tattttgtaactctgctctgaagaggaaaagagaatgcatcttttgtttg
tttgtttgtttgtttgatgaagattccaacgtgacaaagggggaaggaag
gagagatacctgctcttccataggtgggccaggaaacacacactggtggt
taagttgaaattatgtgtgtgtggcaagagaatgacagcaaagaacagtg
gccacttcacattccttgtcctgtgtgtgtcaatttgtagctgtcatcat
cgtccttgggtctgagagaaccgctctcccgaattgtgcactgctcgtaa
gttcactagcttaacctgtccactgcctgtcgttgatgatcatgccatgg
catgaacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24145367_24146547
seq2: B6Ng01-262I21.b_46_1232

seq1  GAATTCTAGTAAATGAATGAGTGAGTCGAATCATTATTTCAACCCAACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTAAATGAATGAGTGAGTCGAATCATTATTTCAACCCAACGC  50

seq1  AACTGTTCGTACTACAGGCACTGGTACCAAGAGGAGCATTCTGCACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCGTACTACAGGCACTGGTACCAAGAGGAGCATTCTGCACACAG  100

seq1  GCAGGATAGTGAGGACTCAACCTACTGTGAAGAAGAATTCTTTCAGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATAGTGAGGACTCAACCTACTGTGAAGAAGAATTCTTTCAGGACT  150

seq1  GAGTCACGGCTCAGTGGGTGAGCACTTGCCTAGCATGTGCAAGGCGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACGGCTCAGTGGGTGAGCACTTGCCTAGCATGTGCAAGGCGCAGA  200

seq1  CTCCAGCACTGTCCAGCATTGAGGAAGAAACAACATGACAGAAAACCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCACTGTCCAGCATTGAGGAAGAAACAACATGACAGAAAACCCAA  250

seq1  AACAAAAGAAAAAAAAGTGAACGAACTTTTAAGTTAGATACGATCACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGAAAAAAAAGTGAACGAACTTTTAAGTTAGATACGATCACTTA  300

seq1  ACTCCAACACTTTTATGTTTTTGTCTCACACTTGTATAATTAAGTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAACACTTTTATGTTTTTGTCTCACACTTGTATAATTAAGTTTTCT  350

seq1  GTACAGACTCACATGGTTCATAAACTGGAATCCACTTCTTTGGACATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGACTCACATGGTTCATAAACTGGAATCCACTTCTTTGGACATTAA  400

seq1  ACTCTTCAAATGTATATATCTACTTTCCTCTTCAACTACTTAAGTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCAAATGTATATATCTACTTTCCTCTTCAACTACTTAAGTACTTT  450

seq1  CAATCTTATAAAAAGAGGGGTAATCAGTACAAGACTCTTCTCTCATGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTATAAAAAGAGGGGTAATCAGTACAAGACTCTTCTCTCATGTTC  500

seq1  AGCAGGCCACATGCTGGCACTCCAGGGTACTTGACTTCCTTCTGTTGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCCACATGCTGGCACTCCAGGGTACTTGACTTCCTTCTGTTGGTA  550

seq1  CTCTGTCTGGACTCTACCCCTACAGTTACCTGGCAACAGCCAGGTAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGGACTCTACCCCTACAGTTACCTGGCAACAGCCAGGTAGGCC  600

seq1  TGGCCCCCTATAAAAGGGGCTGCTTGCCTCTTCCTCTCTCTCTTACTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCCTATAAAAGGGGCTGCTTGCCTCTTCCTCTCTCTCTTACTCTT  650

seq1  GCTTTCTTGCCTCTTGCCTCCTTGTTCCCCCACTCCACTCGTCAGCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTGCCTCTTGCCTCCTTGTTCCCCCACTCCACTCGTCAGCCTCT  700

seq1  ACTTCTCTACTCTTTCCCTCTCTCTGCCTTTCTCAGCCTCTACTACCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTACTCTTTCCCTCTCTCTGCCTTTCTCAGCCTCTACTACCCTC  750

seq1  TTAACTCCCCTCCCATGCCCTAAATAAACTCTATTCTATGCTATAGCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCCCTCCCATGCCCTAAATAAACTCTATTCTATGCTATAGCATC  800

seq1  ATGTGGCTGGTCCCTCAGGGAGAAGGGCTGTCTCAGCACACCTCCATAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTGGTCCCTCAGGGAGAAGGGCTGTCTCAGCACACCTCCATAGG  850

seq1  ACACATTCTTATACTCTTTATCTGTCCCTCCCCCCTTTACACATATAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCTTATACTCTTTATCTGTCCCTCCCCCCTTTACACATATAAAT  900

seq1  TATGTTGGAACTATCTATTGCATTTATTTATTGTTGTTTTGTGTGTGTGT  950
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  TATGTTGGAACTATCTATTGCATTTA-TTATTGTTG-TTTGTGTGTGTGT  948

seq1  GTGCATGCATATGATCATGTGCTCTAGTGCATGCATACATGCCATGGCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCATATGATCATGTGCTCTAGTGCATGCATACATGCCATGGCAC  998

seq1  -ATGGGTGGAGGTCAAATATCAACCTGC-AGGAGTCAATT-CTCTCCTTC  1047
       ||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  AATGGGTGGAGGTCAAATATCAACCTGCAAGGAGTCAATTCCTCTCCTTC  1048

seq1  TTCC-ATGTGGGCATGGTGATGG-ATCTCAGATTGTCAAGCTTGG-CAGT  1094
      |||| |||| ||||| ||||||| ||||||||||||| ||||||| ||||
seq2  TTCCAATGT-GGCAT-GTGATGGAATCTCAGATTGTC-AGCTTGGCCAGT  1095

seq1  AAGC-ACCTTCACCT-GCTGATTCTTCTTGTCATGGTAGAA--TCATTTA  1140
      |||| |||||||||| ||||| |  ||||| ||| ||||||   ||||| 
seq2  AAGCAACCTTCACCTGGCTGAATTCTCTTG-CAT-GTAGAAATCCATTTG  1143

seq1  AAGGTTAATATACGTT-CATATTTCTTCCTTATGT--ACCTCTA  1181
      || | ||||  ||||| ||||||||||||||||||   ||||||
seq2  AAAGCTAATTAACGTTCCATATTTCTTCCTTATGTTACCCTCTA  1187

seq1: chr13_24276187_24277342
seq2: B6Ng01-262I21.g_66_1225 (reverse)

seq1  AAGGGTCATGCCAT-GCATGATCACTCCAAAGGACAGACAGT-GACAGTT  48
      |||| ||||||||| ||||||||| ||  || ||||| |||| ||||| |
seq2  AAGGTTCATGCCATGGCATGATCA-TC--AACGACAGGCAGTGGACAGGT  47

seq1  ACAGCTAGTGA--CTACGAGCAGTGCACATTTCGGGAGAGCGTGTC-CTC  95
        |||||||||   ||||||||||||||| ||||||||||||  || |||
seq2  TAAGCTAGTGAACTTACGAGCAGTGCACAATTCGGGAGAGCGGTTCTCTC  97

seq1  AGACCAAGGAACGATGATGACAGCTAACAAATGGACACACACAGGACAA-  144
      ||||| | | ||||||||||||||| |||||| |||||||||||||||| 
seq2  AGACCCAAGGACGATGATGACAGCT-ACAAATTGACACACACAGGACAAG  146

seq1  GAATGTGAAGT-GCCACTTGTCTTTGCTGTCATTCTCTTGCCACACACAC  193
      ||||||||||| ||||||  ||||||||||||||||||||||||||||||
seq2  GAATGTGAAGTGGCCACTGTTCTTTGCTGTCATTCTCTTGCCACACACAC  196

seq1  ATAATTTCAACTTAACCACCAGTGTGTGTTTCCTGGCCCACCTATGGAAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCAACTTAACCACCAGTGTGTGTTTCCTGGCCCACCTATGGAAG  246

seq1  AGCAGGTATCTCTCCTTCCTT-CCCCTTTGTCACGTTGGAATCTTCATCA  292
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCAGGTATCTCTCCTTCCTTCCCCCTTTGTCACGTTGGAATCTTCATCA  296

seq1  AACAAACAAACAAACAAACAAAAGATGCATTCTCTTTTCCTCTTCAGAGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAACAAAAGATGCATTCTCTTTTCCTCTTCAGAGC  346

seq1  AGAGTTACAAAATAGCCTCCCGCTCTGCAAAAGTGCAGGTGGCACAGAGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTACAAAATAGCCTCCCGCTCTGCAAAAGTGCAGGTGGCACAGAGC  396

seq1  AGACAGCCCAAACTACATTTAACATTACTGTGACTAGAGGGGCAGGGAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCCAAACTACATTTAACATTACTGTGACTAGAGGGGCAGGGAGA  446

seq1  ATGACAATATGCACTAATTGCAGAAGGGAGAAATAAGGAGTGAGGGGACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATATGCACTAATTGCAGAAGGGAGAAATAAGGAGTGAGGGGACA  496

seq1  CAGTGGCAGCCAGCAACAAAAAGGGATGGGGTGAGATCCAGACCAAGTTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCAGCCAGCAACAAAAAGGGATGGGGTGAGATCCAGACCAAGTTA  546

seq1  AATTCTCCTGGTAACTTCTTACCAAACCACTTTCTCATTCTCTTGACTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCCTGGTAACTTCTTACCAAACCACTTTCTCATTCTCTTGACTTT  596

seq1  GACTTGCCTTTGGCATGGCCTTTAGGACAGGTGGAAGAATTAACCCAACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCCTTTGGCATGGCCTTTAGGACAGGTGGAAGAATTAACCCAACT  646

seq1  AGAGCACTAAAAACCAGGCACTTTCAGCTGACTTCACGTGTGGTACCAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTAAAAACCAGGCACTTTCAGCTGACTTCACGTGTGGTACCAAG  696

seq1  ACCTGGCTCCACTCTTCCTACATGGCCCCACTTCTATCATTGGGAACAAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTCCACTCTTCCTACATGGCCCCACTTCTATCATTGGGAACAAC  746

seq1  GGTGCCTCCATACTTATGATACTACTTTCTGAAGATCGATCACCATTCTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTCCATACTTATGATACTACTTTCTGAAGATCGATCACCATTCTG  796

seq1  ACTCACTACAAAACCTTACAAGCATGGGACTTTCAGAAGTATTATCTCAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTACAAAACCTTACAAGCATGGGACTTTCAGAAGTATTATCTCAG  846

seq1  GGTTGGGGACTTAGCTCAGTGGTACTGCAATTGTCCAACAAGCGCAAGGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGGACTTAGCTCAGTGGTACTGCAATTGTCCAACAAGCGCAAGGC  896

seq1  CCTCAGCATTATCTCTGTGCCCCGCTTTCCTCATCTGTAGAACTAAGGAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCATTATCTCTGTGCCCCGCTTTCCTCATCTGTAGAACTAAGGAC  946

seq1  CACACTGTATACCTCAATCAGGCTGTCATAAGAATGAACACAAAGTGTTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTATACCTCAATCAGGCTGTCATAAGAATGAACACAAAGTGTTC  996

seq1  AAAATATGATGCCATGTCACACTCCCCAGAGCTTCTATCAGGTTATCGTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGATGCCATGTCACACTCCCCAGAGCTTCTATCAGGTTATCGTT  1046

seq1  CCACAGCTGGACCCTCGTAACCATTCCACCACACCCTAGCCTGGGCTAGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTGGACCCTCGTAACCATTCCACCACACCCTAGCCTGGGCTAGT  1096

seq1  TATTACTTCAAACTCCAAACCTCTAAGATTTCCCTTCTGTTTACTAGCTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTCAAACTCCAAACCTCTAAGATTTCCCTTCTGTTTACTAGCTG  1146

seq1  TGGTGCTTGAATTC  1156
      ||||||||||||||
seq2  TGGTGCTTGAATTC  1160