BAC Information

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BAC

Clone NameB6Ng01-264F13
Chromosome13 (Build37)
Map Location 86,455,618 - 86,549,102
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264F13.bB6Ng01-264F13.g
ACCGA068274GA068275
length866998
definitionB6Ng01-264F13.b B6Ng01-264F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,455,618 - 86,456,488)(86,548,506 - 86,549,102)
sequence
gaattcatttcaaattattgcattaaaaccaatacttgcaatatttccac
aaaataaaatagggagaaaataacctcagattctcactaacttcaaagaa
aagaggaattaaatgatctataaatttttttttctgtcaaatccacagat
taaaaagaagttgattctaaatagttgtcaactgtatcatggcaaatatc
attgggcagtccagagcagagacatgttaaaaataatttctaacaattca
tattattggaatgttctagtcacttacaggttctctatatgatgaagaaa
tgctaaatataattctcagtgggctgcatgcaattttctgttgtaattcc
tagcatgaggacatgatatgtgcacaggctcaggaagtgtgtttgctctc
atagttgtgactctaggaaggggcagtgaatttcctaatcatcctttcag
aatggaagaaacatagttatgaaaaagaatgttctatattacaatgtttc
atgatactcattttgtaaaatgataaccaagaagtagtcatcaaagagga
gacagacagagtggtaggagaggaagtttatgtttgcataaaatacaaat
gagagtaggtattttactttttttttattacgtattttcctcaattacat
ttccaatgctatcccaaaagtcccccacaccctttccccccacactccct
acccacccattcccattttttggccctggcgttccctgtactggggcata
taaggttgctggtcagtgggccttctcttaccagtgatggcagactaggc
atcttttgatactattgctacataaaactcttactttggaggtagtatgg
tacagagagtaggtct

gaattccttagtttcttgtaacttttgtctaaggttaaggccttatgact
tgttgttattgttgctttaatgatggtagtggtggaagtagttgttactc
ttactttttgttttgatttttgagacagggtttctctgtggagttctgaa
tgtcctggaactcaccctgtagaccaaacttgcatcaaactcaaagagtt
ctacttgcctcctaagtgtaggattaaagatatgtgccaccaccacctag
ctatgacatgtattttaaggaagaatataactgtttaataatttttctaa
aaatattcattcatgcaatgtatttttattatatccactcttattttcga
acctcccatagcaacactctctgatagattcctttcacattttcatattg
tctaatttttaatttgttgttttaagtagttagttcaattagtgttgtgt
acatttagatcggaggaagaacaactactataacaagatcaacttactta
accagctccatttctcaaaaattattcttctcccagcagccaacacatac
tgaactagggatgagcctttataattgctctatcatccatgctggaattc
tgactgggctgatctcatgcaaagcttgtgcaattacaattagaaatttt
gaatacagaaatgcaagagacatgctatatatacaagtcagcacttcatt
tcaaagcagtcttccatatcctaacacaattatattctttccacttcttc
tttcatacacaatgctcctggagtctttctggaaatggaaatagctatgg
tataattaggaattactcaggaatgagatctcataagcacttagctttat
tctttgacagcttatgagtctctacactgaccacatcccaccaatataat
aatcatctttgaaaaagactgagaacagctcaggacaatgaatataaaca
tcagtagctagaagataattttatgggtatgacaatttagcaaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_86455618_86456488
seq2: B6Ng01-264F13.b_43_908

seq1  GAATTCATTTCAAATTATTGCATTAAAACCAATACTTGCAATATTTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCAAATTATTGCATTAAAACCAATACTTGCAATATTTCCAC  50

seq1  AAAATAAAATAGGGAGAAAATAACCTCAGATTCTCACTAACTTCAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATAGGGAGAAAATAACCTCAGATTCTCACTAACTTCAAAGAA  100

seq1  AAGAGGAATTAAATGATCTATAAATTTTTTTTTCTGTCAAATCCACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAATTAAATGATCTATAAATTTTTTTTTCTGTCAAATCCACAGAT  150

seq1  TAAAAAGAAGTTGATTCTAAATAGTTGTCAACTGTATCATGGCAAATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAGTTGATTCTAAATAGTTGTCAACTGTATCATGGCAAATATC  200

seq1  ATTGGGCAGTCCAGAGCAGAGACATGTTAAAAATAATTTCTAACAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCAGTCCAGAGCAGAGACATGTTAAAAATAATTTCTAACAATTCA  250

seq1  TATTATTGGAATGTTCTAGTCACTTACAGGTTCTCTATATGATGAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGGAATGTTCTAGTCACTTACAGGTTCTCTATATGATGAAGAAA  300

seq1  TGCTAAATATAATTCTCAGTGGGCTGCATGCAATTTTCTGTTGTAATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATATAATTCTCAGTGGGCTGCATGCAATTTTCTGTTGTAATTCC  350

seq1  TAGCATGAGGACATGATATGTGCACAGGCTCAGGAAGTGTGTTTGCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGAGGACATGATATGTGCACAGGCTCAGGAAGTGTGTTTGCTCTC  400

seq1  ATAGTTGTGACTCTAGGAAGGGGCAGTGAATTTCCTAATCATCCTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGTGACTCTAGGAAGGGGCAGTGAATTTCCTAATCATCCTTTCAG  450

seq1  AATGGAAGAAACATAGTTATGAAAAAGAATGTTCTATATTACAATGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGAAACATAGTTATGAAAAAGAATGTTCTATATTACAATGTTTC  500

seq1  ATGATACTCATTTTGTAAAATGATAACCAAGAAGTAGTCATCAAAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACTCATTTTGTAAAATGATAACCAAGAAGTAGTCATCAAAGAGGA  550

seq1  GACAGACAGAGTGGTAGGAGAGGAAGTTTATGTTTGCATAAAATACAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGAGTGGTAGGAGAGGAAGTTTATGTTTGCATAAAATACAAAT  600

seq1  GAGAGTAGGTATTTTACTTTTTTTTTATTACGTATTTTCCTCAATTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAGGTATTTTACTTTTTTTTTATTACGTATTTTCCTCAATTACAT  650

seq1  TTCCAATGCTATCCCAAAAGTCCCCCACACCCTTTCCCCCCCACACTCCC  700
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  TTCCAATGCTATCCCAAAAGTCCCCCACACCCTTT-CCCCCCACACT-CC  698

seq1  CTACCCACCCATTCCCATTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGC  750
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTACCCACCCATTCCCATTTTTTGGCCCTGGCGTT-CCCTGTACTGGGGC  747

seq1  ATATAAAGTTTGCTTGTCCAGTGGGCC-TCTCTTACCAGTGATGGCAGAC  799
      |||| ||| ||||| || ||||||||| ||||||||||||||||||||||
seq2  ATAT-AAGGTTGCTGGT-CAGTGGGCCTTCTCTTACCAGTGATGGCAGAC  795

seq1  TAGGCCATCTTTTGATACTA-TGCTACATAAAACTCTT-CTTTGGAGGTA  847
      |||| ||||||||||||||| ||||||||||||||||| |||||||||| 
seq2  TAGG-CATCTTTTGATACTATTGCTACATAAAACTCTTACTTTGGAGGT-  843

seq1  AGTATGGTACAGAAGAGTAAGTCT  871
      |||||||||||| |||||| ||||
seq2  AGTATGGTACAG-AGAGTAGGTCT  866


seq1: chr13_86548506_86549102
seq2: B6Ng01-264F13.g_66_662 (reverse)

seq1  TTCCAGCATGGATGATAGAGCAATTATAAAGGCTCATCCCTAGTTCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCATGGATGATAGAGCAATTATAAAGGCTCATCCCTAGTTCAGTA  50

seq1  TGTGTTGGCTGCTGGGAGAAGAATAATTTTTGAGAAATGGAGCTGGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGCTGCTGGGAGAAGAATAATTTTTGAGAAATGGAGCTGGTTAA  100

seq1  GTAAGTTGATCTTGTTATAGTAGTTGTTCTTCCTCCGATCTAAATGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTGATCTTGTTATAGTAGTTGTTCTTCCTCCGATCTAAATGTACA  150

seq1  CAACACTAATTGAACTAACTACTTAAAACAACAAATTAAAAATTAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTAATTGAACTAACTACTTAAAACAACAAATTAAAAATTAGACAA  200

seq1  TATGAAAATGTGAAAGGAATCTATCAGAGAGTGTTGCTATGGGAGGTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAATGTGAAAGGAATCTATCAGAGAGTGTTGCTATGGGAGGTTCG  250

seq1  AAAATAAGAGTGGATATAATAAAAATACATTGCATGAATGAATATTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGAGTGGATATAATAAAAATACATTGCATGAATGAATATTTTTA  300

seq1  GAAAAATTATTAAACAGTTATATTCTTCCTTAAAATACATGTCATAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTATTAAACAGTTATATTCTTCCTTAAAATACATGTCATAGCTA  350

seq1  GGTGGTGGTGGCACATATCTTTAATCCTACACTTAGGAGGCAAGTAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGTGGCACATATCTTTAATCCTACACTTAGGAGGCAAGTAGAAC  400

seq1  TCTTTGAGTTTGATGCAAGTTTGGTCTACAGGGTGAGTTCCAGGACATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGTTTGATGCAAGTTTGGTCTACAGGGTGAGTTCCAGGACATTC  450

seq1  AGAACTCCACAGAGAAACCCTGTCTCAAAAATCAAAACAAAAAGTAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCCACAGAGAAACCCTGTCTCAAAAATCAAAACAAAAAGTAAGAG  500

seq1  TAACAACTACTTCCACCACTACCATCATTAAAGCAACAATAACAACAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTACTTCCACCACTACCATCATTAAAGCAACAATAACAACAAGT  550

seq1  CATAAGGCCTTAACCTTAGACAAAAGTTACAAGAAACTAAGGAATTC  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCCTTAACCTTAGACAAAAGTTACAAGAAACTAAGGAATTC  597


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