BAC Information

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BAC

Clone NameB6Ng01-265G06
Chromosome13 (Build37)
Map Location 45,807,616 - 45,946,714
singlet/doubletdoublet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265G06.bB6Ng01-265G06.g
ACCGA069056GA069057
length4791,052
definitionB6Ng01-265G06.b B6Ng01-265G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,807,616 - 45,808,100)(45,945,656 - 45,946,714)
sequence
aagacacagcaccatggaaagtgaatggaatggcacatgcctgttattag
cacttgccaggaagaggtaggaggatcagaagttcaaggccatcttcagc
tactttgcaagttcaaagccgaactgtactatatgagacactaacaaaac
aaaacaaaaacaaagaaaatagagaaagaaagagagagagagagagagag
agagagagagagaaataaagacacacacacacacacacacacacacacac
acactgccagtcaccattgccaacatagtacatggatatttgacagagct
tttcagagaaacaaaaccaatagaatgtgtctgtattctgaaagggcatt
cactagattggcttacaggatagagagtcagtccaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagagagagagagagagagagagaga
gagagagagagagagagagagagaaggga
gaattcattgtgtgcctggggcaaactatcatttgcagggagttagggag
gtcagcctatgtgcaagtgtagaagagaaggtccagtccccaagggactc
atctctattgtctttcggcgaagcaggactttcagacttggtggttaata
atttaattcccttgtgacattaataagggagtgtttcatgaattttctat
taaaataaacaaagcaagggtcttctaaattcttgtccttcttttttttc
tctctctctttctattgaggtcccagatttttatcactgtgtgacagact
gtctgagtagaagccctttcactccatggagcctcaaatctttgttgtcc
attgagaaggaggttctggtttttctttctaactaaacatctccttcctg
aaagctgagctgtgagcagcagttagaatgatggtcacatgtcattcttg
ttagcagctggctgtctgcctcagagtggcacattatttgggtttcataa
cagcattttctctctctagcaaaatgttaaatgataaggagcaggaaacc
gcatgagttctgcagagtggcactgtagactgggtgtgatttggagaaac
caggttatgactgtccctggggagagtgtccttcctgtctggttcctatc
ctagcccctatctctgccccctatatgtctactgtgtacagtgggccatc
atgaatcacaaacctgctgaagacatttgctcggggttacctatggacca
ggcttgccctccagaacccaggctctcatttataagttctgcctgagttc
tcagacaactacggaaacccttttgatgaatgcctgtgaccctcgggcac
tacctagacctgtgtgttttctggtaccccatttaggttgcagcctgctg
taggacaggacccatgtcacagtccagtgtttctcaatgggtggtctcat
ctcaggatcttcctgcatctgactcaccaggatgtggtattaaagtcaaa
gacacagtgacacaggctgaaggaatcagatttctgggggtggggggttg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45807616_45808100
seq2: B6Ng01-265G06.b_46_530

seq1  GAATTCAAGACACAGCACCATGGAAAGTGAATGGAATGGCACATGCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACACAGCACCATGGAAAGTGAATGGAATGGCACATGCCTGT  50

seq1  TATTAGCACTTGCCAGGAAGAGGTAGGAGGATCAGAAGTTCAAGGCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCACTTGCCAGGAAGAGGTAGGAGGATCAGAAGTTCAAGGCCATC  100

seq1  TTCAGCTACTTTGCAAGTTCAAAGCCGAACTGTACTATATGAGACACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTACTTTGCAAGTTCAAAGCCGAACTGTACTATATGAGACACTAA  150

seq1  CAAAACAAAACAAAAACAAAGAAAATAGAGAAAGAAAGAGAGAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAAACAAAGAAAATAGAGAAAGAAAGAGAGAGAGAGAG  200

seq1  AGAGAGAGAGAGAGAGAGAAATAAAGACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAAATAAAGACACACACACACACACACACACAC  250

seq1  ACACACACACTGCCAGTCACCATTGCCAACATAGTACATGGATATTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACTGCCAGTCACCATTGCCAACATAGTACATGGATATTTGAC  300

seq1  AGAGCTTTTCAGAGAAACAAAACCAATAGAATGTGTCTGTATTCTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTTCAGAGAAACAAAACCAATAGAATGTGTCTGTATTCTGAAAG  350

seq1  GGCATTCACTAGATTGGCTTACAGGATAGAGAGTCAGTCCAAGAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCACTAGATTGGCTTACAGGATAGAGAGTCAGTCCAAGAAAGAAA  400

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGA  450

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGGA  485
      |||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGGA  485

seq1: chr13_45945656_45946714
seq2: B6Ng01-265G06.g_67_1118 (reverse)

seq1  CCCATCCCCCCA--CCCCCACCCCCAGAAATTCTGATTCCTTCAGCCTGG  48
              ||||  |||||||||||||||| ||||||||||||||||| |
seq2  --------CCCAACCCCCCACCCCCAGAAA-TCTGATTCCTTCAGCCT-G  40

seq1  TGTCACTGTGTCTTTGACTTTAATAACCACATCCTGGTGAGTCAGATGCA  98
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTCACTGTGTCTTTGACTTTAAT-ACCACATCCTGGTGAGTCAGATGCA  89

seq1  GG-AGATCCTGAGATGAGACCA-CCATTGAGAAACACTGGACTGTGACAT  146
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGAAGATCCTGAGATGAGACCACCCATTGAGAAACACTGGACTGTGACAT  139

seq1  GGGTCCTGTCCTACAGCAGGCTGCAACCTAAATGGGGTACCAGAAAACAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTGTCCTACAGCAGGCTGCAACCTAAATGGGGTACCAGAAAACAC  189

seq1  ACAGGTCTAGGTAGTGCCCGAGGGTCACAGGCATTCATCAAAAGGGTTTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTAGGTAGTGCCCGAGGGTCACAGGCATTCATCAAAAGGGTTTC  239

seq1  CGTAGTTGTCTGAGAACTCAGGCAGAACTTATAAATGAGAGCCTGGGTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTTGTCTGAGAACTCAGGCAGAACTTATAAATGAGAGCCTGGGTTC  289

seq1  TGGAGGGCAAGCCTGGTCCATAGGTAACCCCGAGCAAATGTCTTCAGCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGCAAGCCTGGTCCATAGGTAACCCCGAGCAAATGTCTTCAGCAG  339

seq1  GTTTGTGATTCATGATGGCCCACTGTACACAGTAGACATATAGGGGGCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGATTCATGATGGCCCACTGTACACAGTAGACATATAGGGGGCAG  389

seq1  AGATAGGGGCTAGGATAGGAACCAGACAGGAAGGACACTCTCCCCAGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGGGCTAGGATAGGAACCAGACAGGAAGGACACTCTCCCCAGGGA  439

seq1  CAGTCATAACCTGGTTTCTCCAAATCACACCCAGTCTACAGTGCCACTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATAACCTGGTTTCTCCAAATCACACCCAGTCTACAGTGCCACTCT  489

seq1  GCAGAACTCATGCGGTTTCCTGCTCCTTATCATTTAACATTTTGCTAGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTCATGCGGTTTCCTGCTCCTTATCATTTAACATTTTGCTAGAG  539

seq1  AGAGAAAATGCTGTTATGAAACCCAAATAATGTGCCACTCTGAGGCAGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATGCTGTTATGAAACCCAAATAATGTGCCACTCTGAGGCAGAC  589

seq1  AGCCAGCTGCTAACAAGAATGACATGTGACCATCATTCTAACTGCTGCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTGCTAACAAGAATGACATGTGACCATCATTCTAACTGCTGCTC  639

seq1  ACAGCTCAGCTTTCAGGAAGGAGATGTTTAGTTAGAAAGAAAAACCAGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCAGCTTTCAGGAAGGAGATGTTTAGTTAGAAAGAAAAACCAGAA  689

seq1  CCTCCTTCTCAATGGACAACAAAGATTTGAGGCTCCATGGAGTGAAAGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTCAATGGACAACAAAGATTTGAGGCTCCATGGAGTGAAAGGG  739

seq1  CTTCTACTCAGACAGTCTGTCACACAGTGATAAAAATCTGGGACCTCAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACTCAGACAGTCTGTCACACAGTGATAAAAATCTGGGACCTCAAT  789

seq1  AGAAAGAGAGAGAGAAAAAAAAGAAGGACAAGAATTTAGAAGACCCTTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGAGAGAAAAAAAAGAAGGACAAGAATTTAGAAGACCCTTGC  839

seq1  TTTGTTTATTTTAATAGAAAATTCATGAAACACTCCCTTATTAATGTCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATTTTAATAGAAAATTCATGAAACACTCCCTTATTAATGTCAC  889

seq1  AAGGGAATTAAATTATTAACCACCAAGTCTGAAAGTCCTGCTTCGCCGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATTAAATTATTAACCACCAAGTCTGAAAGTCCTGCTTCGCCGAA  939

seq1  AGACAATAGAGATGAGTCCCTTGGGGACTGGACCTTCTCTTCTACACTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATAGAGATGAGTCCCTTGGGGACTGGACCTTCTCTTCTACACTTG  989

seq1  CACATAGGCTGACCTCCCTAACTCCCTGCAAATGATAGTTTGCCCCAGGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGGCTGACCTCCCTAACTCCCTGCAAATGATAGTTTGCCCCAGGC  1039

seq1  ACACAATGAATTC  1059
      |||||||||||||
seq2  ACACAATGAATTC  1052