BAC Information

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BAC

Clone NameB6Ng01-265H11
Chromosome13 (Build37)
Map Location 66,624,956 - 66,854,820
singlet/doubletdoublet
Overlap geneMzf6d, Vmn2r-ps106, LOC666027
Upstream geneLOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneLOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265H11.bB6Ng01-265H11.g
ACCGA069107GA069108
length1,0941,167
definitionB6Ng01-265H11.b B6Ng01-265H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,853,714 - 66,854,820)(66,624,956 - 66,626,002)
sequence
gaattccaaatgtttctggcactaaataatcacaatttctgcaacatatg
agaaggtgaaaagtagaaattattggaatagaagaatatcagctcaaagg
tctagaaaatattttcagtgaaattatgaatgaaaaattttctaaactaa
agaaaatacctatcaaagtacaagaagcatccaaaatagcaaatagattg
gaccaaaaaagtccttttgccacataacagtcaaaactctaaacatataa
agcaaagaaatatgaaaaactgcaacagaaagaaataaaaaactaaataa
aacaaaaacaagtaacgtatggaagcagacctattagcttcatatctgtc
ttctcaatgtctactagtaaagacaacagtgtttggatcgttttgtgctg
cagagtcaaagaaaccacccatgtttctacaagaaagcaactggagcaaa
tgttttggacagattcagaatcagctatgataatgaagttattcagaggt
cactgcctgagacctcacaggtggtcccatctgggtgatgcttcccatgc
agccccagaaaggacccaccatcccatctcccacggctcaaccaccttcc
cctacccattgtgggcagtgatcctgtgctcaccatgtctaaatctcaga
acttcctgaggtcccctcaatgcacccgacagcagatctcagagcaggac
acagagaaccattcaagcctgcacagccacagcaatcttgtagaaaggca
tccggaagatcccgcctctttgtctgactggcatatctgcctggcgacct
tgattggccagtgagtcttacccctcctcaatgttaaagtttgcttcctg
tcgaaggctggaccttttccagatctctggagcccttttcagctcattag
catttgtgcttgcctgggggaagaatccaccattccagctcaggcaatca
gctgccagctcctccctctgtgagcaatgatccttacttcagaccttgcc
tgacattcttcatagcactgcttctttttctgaatcaagtgagtagcttg
aatagccattactctagtacatgtaagtattcaatctgaaccag
gaattccattcatattcctgaccctctgaccatctcttgtctctcacaac
acctgttcctggccagtcgcccttccccttacttatccactctcccatcc
aattctctctctttcttccatctgcgtcctctgactgttttattcccctt
ttgaatgagattcaacaatgctcattagggcttttcttcttgtttagctt
ctttgattctattgaatatagtgtggatatcctgtactttatggttaatg
ttcacttgtaagtgagtacatatattcatgtcattttgtttctgggttac
ctcactcaggatgatagtttctacctgtatccattgtcctggaaaattca
tgatgtccttgtttttaatagcttattattattccattttgtaaataaac
cacattttctgtatacgtatttcgggtgagggacatctggattgtttgca
gtttctagttgttacaaataaaatgggatatgtctctattttggcaagtt
ttctttggccattccctcagtctctgatccagctttgcctctgcatttct
ctttgacaggacaaatgctgttctttgtgtttacagcgttgtggtttaat
ctgattcataattttcataattcaaatttttagcaaaattttattaatgt
tacagtttaacccggtgtacctcatgtttctgcaagatgaatacagaact
gcagttaatatataattctttgtaggaacttcagtgcagaactatgggtt
ctttctatcatttttgtttccttgggtggcatttgcaggggagtcagggt
cttttttctcaggcacccatacattcaccatttggtctctgtccctaaat
cacataagatacagtagacacattttgctattcaatgctaagctaatttg
caagcctggtggttttatgtttttaaattttattattttgggattttgtt
gttcgaagataaaaatttctctgtgaaatcctttttgtcctattagtagg
tatagataccacatcagccacctatcatgtttttttgtacaataagcata
ttgcttctggtgcagttctttatcccacattcttcaaattttgaatttga
actaatatatataaggttatattctatttttccaggaatgaacatatgct
catgacttcgaatacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66853714_66854820
seq2: B6Ng01-265H11.b_45_1138 (reverse)

seq1  CTGGGTCAGATTG-ATACCTACAATGTAACTAGAGTAATGGGCTATTCAA  49
      |||| |||||||| |||| ||| |||| ||||||||||| ||||||||||
seq2  CTGGTTCAGATTGAATACTTAC-ATGT-ACTAGAGTAAT-GGCTATTCAA  47

seq1  GCTACTCACCTTGATTTCAGGAAAAAGAAGGCAAGTGCTATGAAGAATGT  99
      |||||||| ||||| |||| ||||||||||   |||||||||||||||| 
seq2  GCTACTCA-CTTGA-TTCA-GAAAAAGAAG--CAGTGCTATGAAGAATG-  91

seq1  TCAGGCAAGGTCTGAAGTAAGGATCATTGCTCACAGAGGGGAGGAGCTGG  149
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAGGCAAGGTCTGAAGTAAGGATCATTGCTCACAGA-GGGAGGAGCTGG  140

seq1  CAGCTGATTGCCTGAGCTGGAATGGTGGATTCTTCCCCCAGGGCAAGCAC  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGCTGATTGCCTGAGCTGGAATGGTGGATTCTTCCCCCA-GGCAAGCAC  189

seq1  AAATGCTAATGAGCTGAAAAGGGCTCCAGAGATCTGGAAAAGGTCCAGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAATGAGCTGAAAAGGGCTCCAGAGATCTGGAAAAGGTCCAGCC  239

seq1  TTCGACAGGAAGCAAACTTTAACATTGAGGAGGGGTAAGACTCACTGGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACAGGAAGCAAACTTTAACATTGAGGAGGGGTAAGACTCACTGGCC  289

seq1  AATCAAGGTCGCCAGGCAGATATGCCAGTCAGACAAAGAGGCGGGATCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGTCGCCAGGCAGATATGCCAGTCAGACAAAGAGGCGGGATCTT  339

seq1  CCGGATGCCTTTCTACAAGATTGCTGGGGCTGTGCAGGCTTGAATGGTTC  399
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCGGATGCCTTTCTACAAGATTGCTGTGGCTGTGCAGGCTTGAATGGTTC  389

seq1  TCTGTGTCCTGCTCTGAGATCTGCTGTCGGGTGCATTGAGGGGACCTCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCCTGCTCTGAGATCTGCTGTCGGGTGCATTGAGGGGACCTCAG  439

seq1  GAAGCTCTGAGATTTAGACATGGTGAGCACAGGATCACTGCCCACAATGG  499
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTGAGATTTAGACATGGTGAGCACAGGATCACTGCCCACAATGG  489

seq1  GTAGGGGAAGGTGGTTGAGCCGTGGGAGATGGGATGGTGGGTCCTTTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGAAGGTGGTTGAGCCGTGGGAGATGGGATGGTGGGTCCTTTCTG  539

seq1  GGGCTGCATGGGAAGCATCACCCAGATGGGACCACCTGTGAGGTCTCAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCATGGGAAGCATCACCCAGATGGGACCACCTGTGAGGTCTCAGG  589

seq1  CAGTGACCTCTGAATAACTTCATTATCATAGCTGATTCTGAATCTGTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCTCTGAATAACTTCATTATCATAGCTGATTCTGAATCTGTCCA  639

seq1  AAACATTTGCTCCAGTTGCTTTCTTGTAGAAACATGGGTGGTTTCTTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTGCTCCAGTTGCTTTCTTGTAGAAACATGGGTGGTTTCTTTGA  689

seq1  CTCTGCAGCACAAAACGATCCAAACACTGTTGTCTTTACTAGTAGACATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGCACAAAACGATCCAAACACTGTTGTCTTTACTAGTAGACATT  739

seq1  GAGAAGACAGATATGAAGCTAATAGGTCTGCTTCCATACGTTACTTGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACAGATATGAAGCTAATAGGTCTGCTTCCATACGTTACTTGTTT  789

seq1  TTGTTTTATTTAGTTTTTTATTTCTTTCTGTTGCAGTTTTTCATATTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATTTAGTTTTTTATTTCTTTCTGTTGCAGTTTTTCATATTTCT  839

seq1  TTGCTTTATATGTTTAGAGTTTTGACTGTTATGTGGCAAAAGGACTTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATATGTTTAGAGTTTTGACTGTTATGTGGCAAAAGGACTTTTT  889

seq1  TGGTCCAATCTATTTGCTATTTTGGATGCTTCTTGTACTTTGATAGGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAATCTATTTGCTATTTTGGATGCTTCTTGTACTTTGATAGGTAT  939

seq1  TTTCTTTAGTTTAGAAAATTTTTCATTCATAATTTCACTGAAAATATTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGTTTAGAAAATTTTTCATTCATAATTTCACTGAAAATATTTT  989

seq1  CTAGACCTTTGAGCTGATATTCTTCTTCTATTCCAATAATTTCTACTTTT  1049
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  CTAGACCTTTGAGCTGATA---TTCTTCTATTCCAATAATTTCTACTTTT  1036

seq1  CACCTTCTCATATGTTGCAGAAATTGTGATTATTTAGTGCCAGAAACATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTCATATGTTGCAGAAATTGTGATTATTTAGTGCCAGAAACATT  1086

seq1  TGGAATTC  1107
      ||||||||
seq2  TGGAATTC  1094

seq1: chr13_66624956_66626002
seq2: B6Ng01-265H11.g_168_1232

seq1  TTCTCTCTCTTTCTACCATCTGCCTCCTCTGACTGTTTTATTCCCCTTTT  50
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  TTCTCTCTCTTTCTTCCATCTGCGTCCTCTGACTGTTTTATTCCCCTTTT  50

seq1  GAATGAGATTAAACAATGCTCATTAGGGCTTTTCTTCTTGTTTAGCTTCT  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGATTCAACAATGCTCATTAGGGCTTTTCTTCTTGTTTAGCTTCT  100

seq1  TTGGTTCTATGGAATATAGTGTGGATATCCTGTACTTTATGATTAATGTT  150
      ||| |||||| |||||||||||||||||||||||||||||| ||||||||
seq2  TTGATTCTATTGAATATAGTGTGGATATCCTGTACTTTATGGTTAATGTT  150

seq1  CACTTGTAAGTGAGTACATACATTCATGTCATTTTGTTTCTGGGTTACCT  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACTTGTAAGTGAGTACATATATTCATGTCATTTTGTTTCTGGGTTACCT  200

seq1  CACTCAGGATGATAGTTTCTACCTGTATCCATTGGCCTGGAAAATTCATG  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACTCAGGATGATAGTTTCTACCTGTATCCATTGTCCTGGAAAATTCATG  250

seq1  ATGTCCTTGTTTTTAATAGCTTATTAGTATTCCATTTTGTAAATAAACCA  300
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGTCCTTGTTTTTAATAGCTTATTATTATTCCATTTTGTAAATAAACCA  300

seq1  CATTTTCTGTATATGTATTTCGGTTGAGGGACATCTGGATTGTTTGCAGT  350
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  CATTTTCTGTATACGTATTTCGGGTGAGGGACATCTGGATTGTTTGCAGT  350

seq1  TTCTAGTTGTTACAAATAAAATGGGATATGTCTCTACTTGGGCAAGTTTT  400
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  TTCTAGTTGTTACAAATAAAATGGGATATGTCTCTATTTTGGCAAGTTTT  400

seq1  CATTGGCCATTCCCTCAGTCTCTGATCCAGCTTTGCCTCTGCATTTCTCT  450
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCCATTCCCTCAGTCTCTGATCCAGCTTTGCCTCTGCATTTCTCT  450

seq1  TTGACAGGACAAATGCTGTTCTTTGTGTCTACAGCGTTGTGGTTTAAACT  500
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  TTGACAGGACAAATGCTGTTCTTTGTGTTTACAGCGTTGTGGTTTAATCT  500

seq1  GATTCATAATTTTCATAATTCAAATTTTTAGCCAAATTTTATTAATGTTA  550
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATTCATAATTTTCATAATTCAAATTTTTAGCAAAATTTTATTAATGTTA  550

seq1  CAGTTTAAACCGGTGTACCTCATGTTTCTGCAAGATGAATACAGAACTGC  600
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAACCCGGTGTACCTCATGTTTCTGCAAGATGAATACAGAACTGC  600

seq1  AGTTAATGTATAATTCTTTGTAGGAACTTCAGTGTAGAACTATGGGTTCT  650
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  AGTTAATATATAATTCTTTGTAGGAACTTCAGTGCAGAACTATGGGTTCT  650

seq1  TTCTATTATTTTTGTTTCCTTGGGTGACATTTGCAGGGGAGTGAGGGTCT  700
      |||||| ||||||||||||||||||| ||||||||||||||| |||||||
seq2  TTCTATCATTTTTGTTTCCTTGGGTGGCATTTGCAGGGGAGTCAGGGTCT  700

seq1  TTCTTCTCATGCACCCATACATTCACCATTTGGTCTCTGTCCCTAAATCA  750
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCAGGCACCCATACATTCACCATTTGGTCTCTGTCCCTAAATCA  750

seq1  CATAAGATACAGTAGACACA-TTTACTATTCAATGCTAAGCTATTTTGCA  799
      |||||||||||||||||||| ||| |||||||||||||||||| ||||||
seq2  CATAAGATACAGTAGACACATTTTGCTATTCAATGCTAAGCTAATTTGCA  800

seq1  AGCCTGGTGGTTTTAGGTTTTT-AATTTTATTATTTT-GGATTTTGTTGT  847
      ||||||||||||||| |||||| |||||||||||||| ||||||||||||
seq2  AGCCTGGTGGTTTTATGTTTTTAAATTTTATTATTTTGGGATTTTGTTGT  850

seq1  TCG-AGAT-AAAATTTCTCTGTGAAACCCTTTCTGTCCTGTTAGTAGGTA  895
      ||| |||| ||||||||||||||||| ||||| |||||| ||||||||||
seq2  TCGAAGATAAAAATTTCTCTGTGAAATCCTTTTTGTCCTATTAGTAGGTA  900

seq1  TAGACACCACATCAGCCACCTATC--GTGTTTTTGTACAATAAGCATA-T  942
      |||| |||||||||||||||||||  || ||||||||||||||||||| |
seq2  TAGATACCACATCAGCCACCTATCATGTTTTTTTGTACAATAAGCATATT  950

seq1  GCTTCT-TTGCAGTTCTTTAT-CCACA-TCTTC-AATTTTGAAATTTGAC  988
      ||||||  ||||||||||||| ||||| ||||| ||||||||| ||  ||
seq2  GCTTCTGGTGCAGTTCTTTATCCCACATTCTTCAAATTTTGAATTTGAAC  1000

seq1  TAA-ATATAT-AGGTTATATTCTA-TTTTCCAGG-ATG-ACATATGCTCA  1033
      ||| |||||| ||||||||||||| ||||||||| ||| |||||||||||
seq2  TAATATATATAAGGTTATATTCTATTTTTCCAGGAATGAACATATGCTCA  1050

seq1  TGACAT-TAATACTA  1047
      |||| |  |||||||
seq2  TGACTTCGAATACTA  1065