BAC Information

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BAC

Clone NameB6Ng01-265M09
Chromosome13 (Build37)
Map Location 38,433,250 - 38,531,208
singlet/doubletdoublet
Overlap geneBmp6
Upstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik
Downstream geneTxndc5, Muted, Eef1e1, LOC621102, Slc35b3, EG666867
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265M09.bB6Ng01-265M09.g
ACCGA069337GA069338
length9841,055
definitionB6Ng01-265M09.b B6Ng01-265M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,530,576 - 38,531,208)(38,433,250 - 38,434,321)
sequence
gaattcatgtccttagtgaagaactcagaggtgaggatgaaggataaaaa
taaagagaacacgaacattttatgtagaagtaagcaaccctgaaataaaa
aattaagcatgtcagaagctagtgaataaataaatacattgtgcatcccg
gagttcatccagctaattctccttggccagcatctctacaggcctggtag
atttgggggagaagatactggtttgagatttcatagtgttggtgtagctg
tgatgagttctatacttcctttgtcagttcaagctagaccctagaggaag
atttggaaaagctccccagtgaacaataaagacccaaacgtagaagataa
taaacctgatcttaaggttgaaagaacactaataaggttgggggctctag
ctgtgttaagcaaattcccagagccccccaccccgcattagatttcttac
cttaaatactggtataccataccccaattatggtatatgatgtgatgaga
ggatgttcaagttatgattacaaatactaatcagtaaattttgagttaac
cagggttagagttattcacttgggtcagatctaatcttaagagcccttta
aaggcccagagttttatccagctgtgctgggcactggccattatcataga
gggtgtccctgagagcccatgtcttcgaggcccattgttcagtctctaga
gatgttaagaggaggcagaaccctcagcaggtggggtataccggaaggaa
gtttggtcacttgggaatgtgctcccaaaaggcattctgggactctggac
ttttccattctcagcccccttaggggtgcagtctgatctaccctctgtcc
ccatacgacgacattctgcctgacactggtataaatgcaacagtgccagg
tgaccatggactgaaacctccgacacctctcttcctttaagtagtttttc
tttggcacttttgtcacagcaatggaaagctagt
gaattctatagacagtttgggttctaggagtacaaggtctgagtgcgtga
gacaagtgagactcaataaataacagatttgctatttgggttacagtgtg
gaaaaaaaaatctctggaaacagatttatatattagtttttcgctttgcc
accagatgtcctccgagttggaaaatatgatggtccgagtgacattttga
agtgtgaatgcccaacatttttgaacagacagtgatgggatagtgtgagg
gactgtgcatgtgaccgcagactttgggatgagacacatattttgaagtt
tgtcttacaggtgtagctttcagaagcaatatttatttaacactctgatg
ttcatctctcgcactcagcaaacatttacttaacatagttccttttcatt
aaacccaaactggtatttttaaaatgtgagtgagtgagttattatatttt
ggaattgatgtcaaactcctccaaccttgtgctaattataatgctgagag
tttaggattttatgagtggagtgtcccaaggactcggggagggcagacct
caggcttttaagaactacagccacatattagaggacttctatgttgaatt
ttgaaagcaacagcttaaggctttgggccaagcagttgaatgggtctgac
tgaatacaaaaatcaacgagtgtacttgtggttttgtttttgctttgttt
cggtttgggttttgttgagagaagatttctctacgtagtcctggctgtcc
tggaacttgatctgtagaccaggctggcttcgaactactggaattacaga
tgtgtgtcgttactgccgggttacttgtagtgtattgttaatgatgtggt
ttatgggcaagaacagagcacttagcatatcaatggatagcagtatcatt
ttgaaacaaggatatttggcatgttaattaacaagcacatcttttcaatc
agaatttattaggcaacacattgtaaacatagagctctccacactggtta
gacactttgaagtagcatttttagattttctgtgagtactctgtgtcccg
tgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38530576_38531208
seq2: B6Ng01-265M09.b_46_678 (reverse)

seq1  TGCCCAGCACAGCTGGATAAAACTCTGGGCCTTTAAAGGGCTCTTAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCACAGCTGGATAAAACTCTGGGCCTTTAAAGGGCTCTTAAGAT  50

seq1  TAGATCTGACCCAAGTGAATAACTCTAACCCTGGTTAACTCAAAATTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTGACCCAAGTGAATAACTCTAACCCTGGTTAACTCAAAATTTAC  100

seq1  TGATTAGTATTTGTAATCATAACTTGAACATCCTCTCATCACATCATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGTATTTGTAATCATAACTTGAACATCCTCTCATCACATCATATA  150

seq1  CCATAATTGGGGTATGGTATACCAGTATTTAAGGTAAGAAATCTAATGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATTGGGGTATGGTATACCAGTATTTAAGGTAAGAAATCTAATGCG  200

seq1  GGGTGGGGGGCTCTGGGAATTTGCTTAACACAGCTAGAGCCCCCAACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGGCTCTGGGAATTTGCTTAACACAGCTAGAGCCCCCAACCTT  250

seq1  ATTAGTGTTCTTTCAACCTTAAGATCAGGTTTATTATCTTCTACGTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTTCTTTCAACCTTAAGATCAGGTTTATTATCTTCTACGTTTGG  300

seq1  GTCTTTATTGTTCACTGGGGAGCTTTTCCAAATCTTCCTCTAGGGTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTGTTCACTGGGGAGCTTTTCCAAATCTTCCTCTAGGGTCTAG  350

seq1  CTTGAACTGACAAAGGAAGTATAGAACTCATCACAGCTACACCAACACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTGACAAAGGAAGTATAGAACTCATCACAGCTACACCAACACTA  400

seq1  TGAAATCTCAAACCAGTATCTTCTCCCCCAAATCTACCAGGCCTGTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTCAAACCAGTATCTTCTCCCCCAAATCTACCAGGCCTGTAGAG  450

seq1  ATGCTGGCCAAGGAGAATTAGCTGGATGAACTCCGGGATGCACAATGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGCCAAGGAGAATTAGCTGGATGAACTCCGGGATGCACAATGTAT  500

seq1  TTATTTATTCACTAGCTTCTGACATGCTTAATTTTTTATTTCAGGGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTCACTAGCTTCTGACATGCTTAATTTTTTATTTCAGGGTTGC  550

seq1  TTACTTCTACATAAAATGTTCGTGTTCTCTTTATTTTTATCCTTCATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTACATAAAATGTTCGTGTTCTCTTTATTTTTATCCTTCATCCT  600

seq1  CACCTCTGAGTTCTTCACTAAGGACATGAATTC  633
      |||||||||||||||||||||||||||||||||
seq2  CACCTCTGAGTTCTTCACTAAGGACATGAATTC  633

seq1: chr13_38433250_38434321
seq2: B6Ng01-265M09.g_67_1121

seq1  GAATTCTATAGACAGTTTGGGTTCTAGGAGTACAAGGTCTGAGTGCGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGACAGTTTGGGTTCTAGGAGTACAAGGTCTGAGTGCGTGA  50

seq1  GACAAGTGAGACTCAATAAATAACAGATTTGCTATTTGGGTTACAGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTGAGACTCAATAAATAACAGATTTGCTATTTGGGTTACAGTGTG  100

seq1  GAAAAAAAAATCTCTGGAAACAGATTTATATATTAGTTTTTCGCTTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAATCTCTGGAAACAGATTTATATATTAGTTTTTCGCTTTGCC  150

seq1  ACCAGATGTCCTCCGAGTTGGAAAATATGATGGTCCGAGTGACATTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGTCCTCCGAGTTGGAAAATATGATGGTCCGAGTGACATTTTGA  200

seq1  AGTGTGAATGCCCAACATTTTTGAACAGACAGTGATGGGATAGTGTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAATGCCCAACATTTTTGAACAGACAGTGATGGGATAGTGTGAGG  250

seq1  GACTGTGCATGTGACCGCAGACTTTGGGATGAGACACATATTTTGAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCATGTGACCGCAGACTTTGGGATGAGACACATATTTTGAAGTT  300

seq1  TGTCTTACAGGTGTAGCTTTCAGAAGCAATATTTATTTAACACTCTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTACAGGTGTAGCTTTCAGAAGCAATATTTATTTAACACTCTGATG  350

seq1  TTCATCTCTCGCACTCAGCAAACATTTACTTAACATAGTTCCTTTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCTCGCACTCAGCAAACATTTACTTAACATAGTTCCTTTTCATT  400

seq1  AAACCCAAACTGGTATTTTTAAAATGTGAGTGAGTGAGTTATTATATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAACTGGTATTTTTAAAATGTGAGTGAGTGAGTTATTATATTTT  450

seq1  GGAATTGATGTCAAACTCCTCCAACCTTGTGCTAATTATAATGCTGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGATGTCAAACTCCTCCAACCTTGTGCTAATTATAATGCTGAGAG  500

seq1  TTTAGGATTTTATGAGTGGAGTGTCCCAAGGACTCGGGGAGGGCAGACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATTTTATGAGTGGAGTGTCCCAAGGACTCGGGGAGGGCAGACCT  550

seq1  CAGGCTTTTAAGAACTACAGCCACATATTAGAGGACTTCTATGTTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTTAAGAACTACAGCCACATATTAGAGGACTTCTATGTTGAATT  600

seq1  TTGAAAGCAACAGCTTAAGGCTTTGGGCCAAGCAGTTGAATGGGTCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCAACAGCTTAAGGCTTTGGGCCAAGCAGTTGAATGGGTCTGAC  650

seq1  TGAATACAAAAATCAACGAGTGTACTTGTGGTTTTGTTTTTGCTTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACAAAAATCAACGAGTGTACTTGTGGTTTTGTTTTTGCTTTGTTT  700

seq1  CGGTTTGGGTTTTGTTGAGAGAAGATTTCTCTACGTAGTCCTGGCTGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTGGGTTTTGTTGAGAGAAGATTTCTCTACGTAGTCCTGGCTGTCC  750

seq1  TGGAACTTGATCTGTAGACCAGGCTGGCTTCGAACTACTGGAATTACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTTGATCTGTAGACCAGGCTGGCTTCGAACTACTGGAATTACAGA  800

seq1  TGTGTGTCGTTACTGCCGGGTTACTTGTAGTGTATTGTTAATGATGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCGTTACTGCCGGGTTACTTGTAGTGTATTGTTAATGATGTGGT  850

seq1  TTATGGGCAAGAACAGAGCACTTAGCATATCAAATGGATAAGCAGTATCA  900
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TTATGGGCAAGAACAGAGCACTTAGCATATC-AATGGAT-AGCAGTATCA  898

seq1  TTTTGAAACAAGGATATTTGGCATGTTAAATTAACAAGCACCATCTTTTC  950
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  TTTTGAAACAAGGATATTTGGCATGTT-AATTAACAAGCA-CATCTTTTC  946

seq1  AAATCAGAATTTATTAGGCCAAACACATTGTAAACATAGAGCTCTCCACA  1000
       ||||||||||||||||||  |||||||||||||||||||||||||||| 
seq2  -AATCAGAATTTATTAGGC--AACACATTGTAAACATAGAGCTCTCCAC-  992

seq1  ACTGGTAAGGAACCACTTTGAAAGTAGGCATTTTTAAGAATTTTCTGTGA  1050
      |||||| ||    ||||||| ||||| |||||||||   |||||||||||
seq2  ACTGGTTAG---ACACTTTG-AAGTA-GCATTTTTA--GATTTTCTGTGA  1035

seq1  GTTACTCTGTGTCCCCGTGAGA  1072
      | |||||||||| |||||||||
seq2  G-TACTCTGTGT-CCCGTGAGA  1055