BAC Information

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BAC

Clone NameB6Ng01-266D24
Chromosome13 (Build37)
Map Location 26,818,698 - 26,908,891
singlet/doubletdoublet
Overlap geneHdgfl1, LOC100040939
Upstream geneLOC666221, LOC100042180, LOC100042191
Downstream geneLOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266D24.bB6Ng01-266D24.g
ACCGA069692GA069693
length7771,059
definitionB6Ng01-266D24.b B6Ng01-266D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,908,115 - 26,908,891)(26,818,698 - 26,819,763)
sequence
gaattcttctaattactctgctcctttgggtgaatacctagaatgctttt
tgttgtttaaattgagctggtaacattttaaggtagaattcatatctaaa
ttccaataataagtattggaaaaaattaaaaattccaggattcttggtta
ctgtaagatgcatggataccatattacatgaaaagaaaaagttcacatta
aacataatcattttacaaacaggaatgaaaatgaatggagaatgaatgaa
acctggggttatgggaaccagggtaatgtactgcttcagtgcattggtaa
aaagacgttgataagtttttcatttggcaaatgtcgacactatgacctta
gtattctgtcacctcaaagtggttaccagtaaatagagtggagtaatgaa
gccaacagcagcaaagtaacaaagaagatattggaattatgtgccccaaa
tgctttgcatcagaatactgactcatttggctaattagaagaagtgttca
ggagtatatcatattattttggggaaatatattgcctttaaatttgatat
aaacattttattctaacttaaatacacgtgttctatctgcttttctaacc
aagaatttgttcttaagtcataccactttatgaatttccatttaaggaat
agcaatagtggataaagaaaatcttcaaaaatatgagatgcaagattaac
tatgacttttattgagattcccagatggtacgttttgtttgtttgtttgt
ttggttggttgtttgtttggttggttg
gaattcattttccttccttttggaattcacacttaattagtctctctaaa
gctgtgtgtttcttttcttgatataatctcttattatctcatcttccttt
gttatctcatttgtcttctttcattctttttcctatttttctcacctctc
ttctttttttgtttgcttttgtttgttttgattattaagtccaatctcca
cctttgttcttccctggcagaatggtcagaaaagtgatagtatggaagag
catttcataggcttggtagcctataggtaaaaattaacctgttttatgag
tgaatatgtttactagaaagggcatgctatgtttgaactcacagaacaaa
atgtacatttgataacactataaatatgattatatgtttaagtttctata
tataagaatattatagactaatacaactgagcagagagggttgagaactt
atatattcagcattcaattttctcaagaagtagcattctctgtgccatta
actctacacatgggtgttgcaaacaaagcaagaaatataattgtattgca
tggcctccctctatgttccccagttcccatattagcactacctaatccgt
acttaacatttttccctttggtctcagaagcagcttttgcctttctccaa
actcaattccaaggtgcttgcaatagctaatagaatgcatcacttgagaa
gtctatttcccattcctgcaacataggataaacactactgctgacagagg
aattggtgaagaatttgccacctatataacagcagaatgttactccccca
tggaaaacaatgaaatcctatcacttgcaggaaattacagaacagtgtta
agtgaaaacagtcaggcaccaaaagacaaataccatgttttctcattatt
catagaagctacaatcattgaacacgtaatgttttagacagtaacctaac
ctcttgcaaaatttggcacagagcagaaaagtagatggcaagaatgtttc
acagtcagtttgtaaggaaataatttccattttctacaaatagtagatac
ctattattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26908115_26908891
seq2: B6Ng01-266D24.b_45_821 (reverse)

seq1  CAACCAACCAAACAAACAACCAACCAAACAAACAAACAAACAAAACGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCAAACAAACAACCAACCAAACAAACAAACAAACAAAACGTAC  50

seq1  CATCTGGGAATCTCAATAAAAGTCATAGTTAATCTTGCATCTCATATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGAATCTCAATAAAAGTCATAGTTAATCTTGCATCTCATATTTT  100

seq1  TGAAGATTTTCTTTATCCACTATTGCTATTCCTTAAATGGAAATTCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTTTCTTTATCCACTATTGCTATTCCTTAAATGGAAATTCATAA  150

seq1  AGTGGTATGACTTAAGAACAAATTCTTGGTTAGAAAAGCAGATAGAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTATGACTTAAGAACAAATTCTTGGTTAGAAAAGCAGATAGAACAC  200

seq1  GTGTATTTAAGTTAGAATAAAATGTTTATATCAAATTTAAAGGCAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTAAGTTAGAATAAAATGTTTATATCAAATTTAAAGGCAATATA  250

seq1  TTTCCCCAAAATAATATGATATACTCCTGAACACTTCTTCTAATTAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAAAATAATATGATATACTCCTGAACACTTCTTCTAATTAGCCA  300

seq1  AATGAGTCAGTATTCTGATGCAAAGCATTTGGGGCACATAATTCCAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTCAGTATTCTGATGCAAAGCATTTGGGGCACATAATTCCAATAT  350

seq1  CTTCTTTGTTACTTTGCTGCTGTTGGCTTCATTACTCCACTCTATTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGTTACTTTGCTGCTGTTGGCTTCATTACTCCACTCTATTTACT  400

seq1  GGTAACCACTTTGAGGTGACAGAATACTAAGGTCATAGTGTCGACATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCACTTTGAGGTGACAGAATACTAAGGTCATAGTGTCGACATTTG  450

seq1  CCAAATGAAAAACTTATCAACGTCTTTTTACCAATGCACTGAAGCAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAAAAACTTATCAACGTCTTTTTACCAATGCACTGAAGCAGTAC  500

seq1  ATTACCCTGGTTCCCATAACCCCAGGTTTCATTCATTCTCCATTCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCTGGTTCCCATAACCCCAGGTTTCATTCATTCTCCATTCATTTT  550

seq1  CATTCCTGTTTGTAAAATGATTATGTTTAATGTGAACTTTTTCTTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGTTTGTAAAATGATTATGTTTAATGTGAACTTTTTCTTTTCAT  600

seq1  GTAATATGGTATCCATGCATCTTACAGTAACCAAGAATCCTGGAATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGGTATCCATGCATCTTACAGTAACCAAGAATCCTGGAATTTTT  650

seq1  AATTTTTTCCAATACTTATTATTGGAATTTAGATATGAATTCTACCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTCCAATACTTATTATTGGAATTTAGATATGAATTCTACCTTAA  700

seq1  AATGTTACCAGCTCAATTTAAACAACAAAAAGCATTCTAGGTATTCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTACCAGCTCAATTTAAACAACAAAAAGCATTCTAGGTATTCACCC  750

seq1  AAAGGAGCAGAGTAATTAGAAGAATTC  777
      |||||||||||||||||||||||||||
seq2  AAAGGAGCAGAGTAATTAGAAGAATTC  777

seq1: chr13_26818698_26819763
seq2: B6Ng01-266D24.g_63_1121

seq1  GAATTCATTTTCCTTCCTTTTGGAATTCACACTTAATTAGTCTCTCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCCTTCCTTTTGGAATTCACACTTAATTAGTCTCTCTAAA  50

seq1  GCTGTGTGTTTCTTTTCTTGATATAATCTCTTATTATCTCATCTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTTTCTTTTCTTGATATAATCTCTTATTATCTCATCTTCCTTT  100

seq1  GTTATCTCATTTGTCTTCTTTCATTCTTTTTCCTATTTTTCTCACCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCATTTGTCTTCTTTCATTCTTTTTCCTATTTTTCTCACCTCTC  150

seq1  TTCTTTTTTTGTTTGCTTTTGTTTGTTTTGATTATTAAGTCCAATCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTGTTTGCTTTTGTTTGTTTTGATTATTAAGTCCAATCTCCA  200

seq1  CCTTTGTTCTTCCCTGGCAGAATGGTCAGAAAAGTGATAGTATGGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTCTTCCCTGGCAGAATGGTCAGAAAAGTGATAGTATGGAAGAG  250

seq1  CATTTCATAGGCTTGGTAGCCTATAGGTAAAAATTAACCTGTTTTATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATAGGCTTGGTAGCCTATAGGTAAAAATTAACCTGTTTTATGAG  300

seq1  TGAATATGTTTACTAGAAAGGGCATGCTATGTTTGAACTCACAGAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGTTTACTAGAAAGGGCATGCTATGTTTGAACTCACAGAACAAA  350

seq1  ATGTACATTTGATAACACTATAAATATGATTATATGTTTAAGTTTCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATTTGATAACACTATAAATATGATTATATGTTTAAGTTTCTATA  400

seq1  TATAAGAATATTATAGACTAATACAACTGAGCAGAGAGGGTTGAGAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAATATTATAGACTAATACAACTGAGCAGAGAGGGTTGAGAACTT  450

seq1  ATATATTCAGCATTCAATTTTCTCAAGAAGTAGCATTCTCTGTGCCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCAGCATTCAATTTTCTCAAGAAGTAGCATTCTCTGTGCCATTA  500

seq1  ACTCTACACATGGGTGTTGCAAACAAAGCAAGAAATATAATTGTATTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACACATGGGTGTTGCAAACAAAGCAAGAAATATAATTGTATTGCA  550

seq1  TGGCCTCCCTCTATGTTCCCCAGTTCCCATATTAGCACTACCTAATCCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCCTCTATGTTCCCCAGTTCCCATATTAGCACTACCTAATCCGT  600

seq1  ACTTAACATTTTTCCCTTTGGTCTCAGAAGCAGCTTTTGCCTTTCTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACATTTTTCCCTTTGGTCTCAGAAGCAGCTTTTGCCTTTCTCCAA  650

seq1  ACTCAATTCCAAGGTGCTTGCAATAGCTAATAGAATGCATCACTTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTCCAAGGTGCTTGCAATAGCTAATAGAATGCATCACTTGAGAA  700

seq1  GTCTATTTCCCATTCCTGCAACATAGGATAAACACTACTGCTGACAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTTCCCATTCCTGCAACATAGGATAAACACTACTGCTGACAGAGG  750

seq1  AATTGGTGAAGAATTTGCCACCTATATAACAGCAGAATGTTACTCCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTGAAGAATTTGCCACCTATATAACAGCAGAATGTTACTCCCCCA  800

seq1  TGGAAAACAATGAAATCCTATCACTTGCAGGAAATTACAGAACAGTGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACAATGAAATCCTATCACTTGCAGGAAATTACAGAACAGTGTTA  850

seq1  AGTGAAAACAGTCAGGCACCAAAAGACAAATACCATGTTTTCTCATTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAACAGTCAGGCACCAAAAGACAAATACCATGTTTTCTCATTATT  900

seq1  CATAGAAGCTACAATCATTGAACACGTAATGTTTTAGACAGTAACCTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGCTACAATCATTGAACACGTAATGTTTTAGACAGTAACCTAAC  950

seq1  CTCTTGCAAAATTTGGCACAGAGCAGAAAAAGTAGATGGCAAGAATGTTT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCTTGCAAAATTTGGCACAGAGCAG-AAAAGTAGATGGCAAGAATGTTT  999

seq1  CAACAGTTCAGTTTTGTAAGGGAAATAATTTCCAATTTTCTACAAATAGT  1050
      | |||| |||| ||||||| ||||||||||||| ||||||||||||||||
seq2  C-ACAG-TCAG-TTTGTAA-GGAAATAATTTCC-ATTTTCTACAAATAGT  1044

seq1  AGAATACCTATTATTG  1066
      || |||||||||||||
seq2  AG-ATACCTATTATTG  1059