BAC Information

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BAC

Clone NameB6Ng01-267C14
Chromosome13 (Build37)
Map Location 22,166,908 - 22,315,872
singlet/doubletdoublet
Overlap geneLOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9
Upstream geneOlfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj
Downstream geneOTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267C14.bB6Ng01-267C14.g
ACCGA070368GA070369
length1,141399
definitionB6Ng01-267C14.b B6Ng01-267C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,166,908 - 22,168,046)(22,315,468 - 22,315,872)
sequence
gaattcctccctttacccacttaggatctttccactttcccccttagata
gctttcaaaggaaactttttacaatttggtaataaactctataatcactt
ctctaagtgtcttctcttcctgagacttccaactcgcatgctgaaagata
gagcccagtagttcctgctgagatagaacaaaggctgcattgcttaatcc
tcccctgttaggctgcagatgttaatcgcctaaaccagcagtcttttact
ctcagaaagaacaaaaaagtttttaggaccttttagaagttatcatcaac
atttcagtataattagagagctaggaagctccaagaccctcagactttaa
agccatcactagagtcctactctgtcactccaccactaccctggcccagg
ctgggagtctccctgcatttgaccttgaaagaaatctgtagagggctgac
ttgtgggagagaaggatgtgggctcctgtcactctgagcagggacagtgg
caggattcagggagaagatggtctatcatttcctaagtgcaatccagaat
tgtctcagtgtccacaaggacagtgtgtgtggtcactgtgcgtgatctgc
tccttacacaggacaagcaggggtaggagacagaggcacctgccgtgcag
cctggagtaggaagctcttgctccgactgcttctcttagctgtataaact
tctggcgacttcagtcttctgtgcatggagcactctttctttctttatgg
tgatttcatttattgtaatttctccttttctagatcaaatgtaaaccatg
gaatatgagaattgcagataaaacagacatgaggctaaatactgatagta
acattctgattttagaaaatggatttttagtgcgaagtaggaactttcac
aaggtactacttattcctgtcagttcattgactccctaaatttatacctg
tattacataaaagcatacttacatgtgaaaagtactttttaaagaagcca
ataagtatgctcaaggtgatgaacatatgaatgaaaggccaggatttaag
tcttacattgggtggtcacaaagatgttcttgtgaatactgagcctttct
atttctaaactttggcatccacacgtcattggaattcctca
aaggagcttgaggaagcacacacaagacttacacagttccaagttagatg
agggtcccagcactaaaagaggaaggagacaccactgccatccaagaact
tatttgcaactaatgtctgctggaaatgggacaatcaatttactccactg
aaatgtcactaagtgacactcaaccacactataggacaggtctcatgtcc
agttataacatctaacagaaaaggaaatcatccatgttcctgttttgttt
gtgttttttttttcctttgatatttttgtttgattcctttcattatattt
tccttttggtgtttattttgttttgttttattgcttttgtagtggagatc
aaacctaaaattaggtgggtagggtggaatagtttatgtggaaggtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22166908_22168046
seq2: B6Ng01-267C14.b_46_1186

seq1  GAATTCCTCCCTTTACCCACTTAGGATCTTTCCACTTTCCCCCTTAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTTTACCCACTTAGGATCTTTCCACTTTCCCCCTTAGATA  50

seq1  GCTTTCAAAGGAAACTTTTTACAATTTGGTAATAAACTCTATAATCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAAGGAAACTTTTTACAATTTGGTAATAAACTCTATAATCACTT  100

seq1  CTCTAAGTGTCTTCTCTTCCTGAGACTTCCAACTCGCATGCTGAAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGTGTCTTCTCTTCCTGAGACTTCCAACTCGCATGCTGAAAGATA  150

seq1  GAGCCCAGTAGTTCCTGCTGAGATAGAACAAAGGCTGCATTGCTTAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGTAGTTCCTGCTGAGATAGAACAAAGGCTGCATTGCTTAATCC  200

seq1  TCCCCTGTTAGGCTGCAGATGTTAATCGCCTAAACCAGCAGTCTTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTTAGGCTGCAGATGTTAATCGCCTAAACCAGCAGTCTTTTACT  250

seq1  CTCAGAAAGAACAAAAAAGTTTTTAGGACCTTTTAGAAGTTATCATCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGAACAAAAAAGTTTTTAGGACCTTTTAGAAGTTATCATCAAC  300

seq1  ATTTCAGTATAATTAGAGAGCTAGGAAGCTCCAAGACCCTCAGACTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTATAATTAGAGAGCTAGGAAGCTCCAAGACCCTCAGACTTTAA  350

seq1  AGCCATCACTAGAGTCCTACTCTGTCACTCCACCACTACCCTGGCCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCACTAGAGTCCTACTCTGTCACTCCACCACTACCCTGGCCCAGG  400

seq1  CTGGGAGTCTCCCTGCATTTGACCTTGAAAGAAATCTGTAGAGGGCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTCTCCCTGCATTTGACCTTGAAAGAAATCTGTAGAGGGCTGAC  450

seq1  TTGTGGGAGAGAAGGATGTGGGCTCCTGTCACTCTGAGCAGGGACAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAGAGAAGGATGTGGGCTCCTGTCACTCTGAGCAGGGACAGTGG  500

seq1  CAGGATTCAGGGAGAAGATGGTCTATCATTTCCTAAGTGCAATCCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTCAGGGAGAAGATGGTCTATCATTTCCTAAGTGCAATCCAGAAT  550

seq1  TGTCTCAGTGTCCACAAGGACAGTGTGTGTGGTCACTGTGCGTGATCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGTGTCCACAAGGACAGTGTGTGTGGTCACTGTGCGTGATCTGC  600

seq1  TCCTTACACAGGACAAGCAGGGGTAGGAGACAGAGGCACCTGCCGTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACACAGGACAAGCAGGGGTAGGAGACAGAGGCACCTGCCGTGCAG  650

seq1  CCTGGAGTAGGAAGCTCTTGCTCCGACTGCTTCTCTTAGCTGTAT-AACT  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTGGAGTAGGAAGCTCTTGCTCCGACTGCTTCTCTTAGCTGTATAAACT  700

seq1  TCTGGCGACTTCAGTCTTCTGTGCATGGAGCACTCTTTCTTTCTTTATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCGACTTCAGTCTTCTGTGCATGGAGCACTCTTTCTTTCTTTATGG  750

seq1  TGATTTCATTTATTGTAATTTCTCCTTTTCTAGATCAAATGTAAACCATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCATTTATTGTAATTTCTCCTTTTCTAGATCAAATGTAAACCATG  800

seq1  GAATATGAGAATTGCAGATAAAACAGACATGAGGCTAAATACTGATAGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAGAATTGCAGATAAAACAGACATGAGGCTAAATACTGATAGTA  850

seq1  ACA-TCTGATTTTAGAAAATGGATTTTTAGTGCGAAGTAGGAAC-TTCAC  897
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACATTCTGATTTTAGAAAATGGATTTTTAGTGCGAAGTAGGAACTTTCAC  900

seq1  AAGGTACTAC-TATTCCTGTCAGTTCATTGACTCCCTAAA-TTATACCTG  945
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  AAGGTACTACTTATTCCTGTCAGTTCATTGACTCCCTAAATTTATACCTG  950

seq1  TATTACATAAAAGCATACTTTACATGTGAAAAGTACTTTTTAAAGAAGCC  995
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATTACATAAAAGCATAC-TTACATGTGAAAAGTACTTTTTAAAGAAGCC  999

seq1  AAATAAGTATGCTCAAGGTGATGAACATATGAATTGGAAAGCCAGAATTT  1045
       |||||||||||||||||||||||||||||||| || || ||||| ||||
seq2  -AATAAGTATGCTCAAGGTGATGAACATATGAA-TGAAAGGCCAGGATTT  1047

seq1  AAGTC-TACATTGGGTGGTCACAAAGGATGTTCTTGTGAATACTGAG-CT  1093
      ||||| ||||||||||||||||||| ||||||||||||||||||||| ||
seq2  AAGTCTTACATTGGGTGGTCACAAA-GATGTTCTTGTGAATACTGAGCCT  1096

seq1  TTCTATTTCTAAAACTTTGGCATCCACACGTCATTTGAATCCCTCA  1139
      |||||||||| |||||||||||||||||||||||| |||| |||||
seq2  TTCTATTTCT-AAACTTTGGCATCCACACGTCATTGGAATTCCTCA  1141

seq1: chr13_22315468_22315872
seq2: B6Ng01-267C14.g_69_473 (reverse)

seq1  AATACCTTCCACATAAACTATTCCACCCTACCCACCTAATTTTAGGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTCCACATAAACTATTCCACCCTACCCACCTAATTTTAGGTTTG  50

seq1  ATCTCCACTACAAAAGCAATAAAACAAAACAAAATAAACACCAAAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCACTACAAAAGCAATAAAACAAAACAAAATAAACACCAAAAGGAA  100

seq1  AATATAATGAAAGGAATCAAACAAAAATATCAAAGGAAAAAAAAAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATGAAAGGAATCAAACAAAAATATCAAAGGAAAAAAAAAACACA  150

seq1  AACAAAACAGGAACATGGATGATTTCCTTTTCTGTTAGATGTTATAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAGGAACATGGATGATTTCCTTTTCTGTTAGATGTTATAACTG  200

seq1  GACATGAGACCTGTCCTATAGTGTGGTTGAGTGTCACTTAGTGACATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGACCTGTCCTATAGTGTGGTTGAGTGTCACTTAGTGACATTTC  250

seq1  AGTGGAGTAAATTGATTGTCCCATTTCCAGCAGACATTAGTTGCAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTAAATTGATTGTCCCATTTCCAGCAGACATTAGTTGCAAATAA  300

seq1  GTTCTTGGATGGCAGTGGTGTCTCCTTCCTCTTTTAGTGCTGGGACCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGATGGCAGTGGTGTCTCCTTCCTCTTTTAGTGCTGGGACCCTC  350

seq1  ATCTAACTTGGAACTGTGTAAGTCTTGTGTGTGCTTCCTCAAGCTCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACTTGGAACTGTGTAAGTCTTGTGTGTGCTTCCTCAAGCTCCTTG  400

seq1  AATTC  405
      |||||
seq2  AATTC  405