BAC Information

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BAC

Clone NameB6Ng01-268L18
Chromosome13 (Build37)
Map Location 42,647,550 - 42,777,532
singlet/doubletdoublet
Overlap genePhactr1
Upstream geneEG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1, Edn1, Hn1-ps4
Downstream geneTbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268L18.bB6Ng01-268L18.g
ACCGA071513GA071514
length1,1061,173
definitionB6Ng01-268L18.b B6Ng01-268L18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,776,413 - 42,777,532)(42,647,550 - 42,648,717)
sequence
gaattccttagtcttcagccattcccttcagcacattctatacagtgcta
ctggctcatctgcccatgcccggtataggctgtttttgatacagaaccgt
ggttcgtgcagcagcggcaaacatcacagccttgccgtgtttcctatagc
atgcactagcctggcatgaaaaccagccagccccttctcacggagcccat
gcagttacccctgatactggcacagaagatctatctctatttctgcacta
ttatatttcaaaggaggaacaagaggaagtctttaaaaatcagattctga
aggctaaagcaatcacttgcttcctaagtctgcacactctcatctgagaa
accaagtctgataagaggaaactttaaaaaaaaaaaatagccaaaggtac
cccaacagcaaagaatacttactgtaaaaacatgtaaaaccaagggccgt
cgatagaacaaatgagcagtttcaaccagctgccttcgatcttattaaat
attcccagcgaaagtaaacagttttgattatctgattagatcagtgatga
ataatgtattctgtccactggactttctctatcagataaaatggccagaa
caggttaccttagcaaccgaaggtgacgccagttccagcctctccacgcc
ctcctctgcgaaggaaggaaattaccactttcccatgtaaaactttggca
gggaaccatcaaaatctacatgaagattttgcatcatccagggccattca
cagtctactctcccacctcttaaagcggagatctcaccggttatttaaaa
atcagaatttctgctttaataatctatttttgcgatctcaaatcccagtc
tgctttgcagtaagaacaaaatacatggtaaatgattaaacagtggggag
gtctgtagtgtttagaccatgttgggagcacctgtctctatctttctgct
gatggggtagggtgatggagaaaggctatttaactggcatatagtatgtc
agtgacattcccaataatatatacacaaaacagtcaccggcacctagctg
aaataactctttctctgtccctagacagctaaaagcctgtcttgaattcc
atattt
gaattcagaaacagctaggagaaagcaggtgtcttattcaggcaggcatt
aaagagtctttcttataaaagtgtagaacttttttggttgttaaaatgta
gttatattttattcacactgacatggtatgtttactactattattttgaa
atggatgtttttaaatgtcacaagaataatttctaacacagtaaatatag
attaatataaacagtgtaggccaaggttcttcttgagaactgagagattc
ttgaaaatttttaacagtggaaagtggttctgagaccaaaatcccctgac
tcctaacttaaaggtacagcactccctttcagaatgcacagatttcactt
gcctttttaatgtagttttgcaccataacgtatgaataaagtcatagtct
gacatctgatctttatgtgcctcctgttctgtctggttttatgtgtccac
ttgacacaagttagtcaccagagaggaaggagcctctgttgaagaaatgc
ctccgtgagatccagctggaaggcattttcccaattagtgatcagaaggg
gaaggcccagcccgttgtgggtggtaacatctctgggctggtggtcctgt
ttctctaaataagaagactgagcaagccatggggagcaaaccaataactt
gcatccctccatggcctctgcatcagcttctgctccaggtcacagccatg
cttgagttccagttctgacgacctccaatcatggactatgatcttgaact
aggagccaaattcatcctttcctccccaacttcttgtttggtcatggttt
ttttatcacagcaatagaaacacaaactacggaacctccctaatggggac
tcctcaaagccatgacgtgactataccattccttttctgttttcccattg
taccaacatgtctctgttgtatatcttttctaaggtattataaattcctg
aagaatgtgatgtatttaatttgcttgcatgtgcttgggtttctgactgg
aggattcaaggtcattaataattcagagtcatgtgttaaagaacagcttc
tgtggggaagctggtgctaggctctctaatgcaagccaaaggttgatcca
attctcacactctcctaacagcctgacactcaggatatgtattaatcact
tacattaacaaataccttcttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_42776413_42777532
seq2: B6Ng01-268L18.b_47_1152 (reverse)

seq1  AAATATGGGAAATTTCAGACAGCTTTTAAGCTGTTTCTAGGGACAGAAGG  50
      ||||||||  ||||  ||||||  ||| |||||  ||||||||||||  |
seq2  AAATATGG--AATTCAAGACAGGCTTTTAGCTG--TCTAGGGACAGA--G  44

seq1  AAAGAGTTATTTTCAGCCTAGGTGCCGGTGACTGTTTTTGTGTATTAATT  100
      ||||||||| |||||| ||||||||||||||||| ||||||||||  |||
seq2  AAAGAGTTA-TTTCAG-CTAGGTGCCGGTGACTG-TTTTGTGTATATATT  91

seq1  ATAATGGGAATGTTCACTGAACATACTATATTGCCAGTTAAATAGCCTTT  150
      ||  |||||||| |||||| |||||||||| |||||||||||||||||||
seq2  AT--TGGGAATG-TCACTG-ACATACTATA-TGCCAGTTAAATAGCCTTT  136

seq1  CTCCATCACCCTACCCCATTCAGCAGAAAGATAGAGACAGGTGCT-CCAA  199
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  CTCCATCACCCTACCCCA-TCAGCAGAAAGATAGAGACAGGTGCTCCCAA  185

seq1  CATGGTCTAAACACTACAGACCTCCCCACTGTTTAATCATTTACCATGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTAAACACTACAGACCTCCCCACTGTTTAATCATTTACCATGTA  235

seq1  TTTTGTTCTTACTGCAAAGCAGACTGGGATTTGAGATCGCAAAAATAGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTTACTGCAAAGCAGACTGGGATTTGAGATCGCAAAAATAGAT  285

seq1  TATTAAAGCAGAAATTCTGATTTTTAAATAACCGGTGAGATCTCCGCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGCAGAAATTCTGATTTTTAAATAACCGGTGAGATCTCCGCTTT  335

seq1  AAGAGGTGGGAGAGTAGACTGTGAATGGCCCTGGATGATGCAAAATCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTGGGAGAGTAGACTGTGAATGGCCCTGGATGATGCAAAATCTTC  385

seq1  ATGTAGATTTTGATGGTTCCCTGCCAAAGTTTTACATGGGAAAGTGGTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATTTTGATGGTTCCCTGCCAAAGTTTTACATGGGAAAGTGGTAA  435

seq1  TTTCCTTCCTTCGCAGAGGAGGGCGTGGAGAGGCTGGAACTGGCGTCACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCTTCGCAGAGGAGGGCGTGGAGAGGCTGGAACTGGCGTCACC  485

seq1  TTCGGTTGCTAAGGTAACCTGTTCTGGCCATTTTATCTGATAGAGAAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTTGCTAAGGTAACCTGTTCTGGCCATTTTATCTGATAGAGAAAGT  535

seq1  CCAGTGGACAGAATACATTATTCATCACTGATCTAATCAGATAATCAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGACAGAATACATTATTCATCACTGATCTAATCAGATAATCAAAA  585

seq1  CTGTTTACTTTCGCTGGGAATATTTAATAAGATCGAAGGCAGCTGGTTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTACTTTCGCTGGGAATATTTAATAAGATCGAAGGCAGCTGGTTGA  635

seq1  AACTGCTCATTTGTTCTATCGACGGCCCTTGGTTTTACATGTTTTTACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCATTTGTTCTATCGACGGCCCTTGGTTTTACATGTTTTTACAG  685

seq1  TAAGTATTCTTTGCTGTTGGGGTACCTTTGGCTATTTTTTTTTTTTAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTCTTTGCTGTTGGGGTACCTTTGGCTATTTTTTTTTTTTAAAG  735

seq1  TTTCCTCTTATCAGACTTGGTTTCTCAGATGAGAGTGTGCAGACTTAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTATCAGACTTGGTTTCTCAGATGAGAGTGTGCAGACTTAGGA  785

seq1  AGCAAGTGATTGCTTTAGCCTTCAGAATCTGATTTTTAAAGACTTCCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGATTGCTTTAGCCTTCAGAATCTGATTTTTAAAGACTTCCTCT  835

seq1  TGTTCCTCCTTTGAAATATAATAGTGCAGAAATAGAGATAGATCTTCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCTTTGAAATATAATAGTGCAGAAATAGAGATAGATCTTCTGT  885

seq1  GCCAGTATCAGGGGTAACTGCATGGGCTCCGTGAGAAGGGGCTGGCTGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTATCAGGGGTAACTGCATGGGCTCCGTGAGAAGGGGCTGGCTGGT  935

seq1  TTTCATGCCAGGCTAGTGCATGCTATAGGAAACACGGCAAGGCTGTGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCCAGGCTAGTGCATGCTATAGGAAACACGGCAAGGCTGTGATG  985

seq1  TTTGCCGCTGCTGCACGAACCACGGTTCTGTATCAAAAACAGCCTATACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCGCTGCTGCACGAACCACGGTTCTGTATCAAAAACAGCCTATACC  1035

seq1  GGGCATGGGCAGATGAGCCAGTAGCACTGTATAGAATGTGCTGAAGGGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGGCAGATGAGCCAGTAGCACTGTATAGAATGTGCTGAAGGGAA  1085

seq1  TGGCTGAAGACTAAGGAATTC  1120
      |||||||||||||||||||||
seq2  TGGCTGAAGACTAAGGAATTC  1106

seq1: chr13_42647550_42648717
seq2: B6Ng01-268L18.g_64_1236

seq1  GAATTCAGAAACAGCTAGGAGAAAGCAGGTGTCTTATTCAGGCAGGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAACAGCTAGGAGAAAGCAGGTGTCTTATTCAGGCAGGCATT  50

seq1  AAAGAGTCTTTCTTATAAAAGTGTAGAACTTTTTTGGTTGTTAAAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCTTTCTTATAAAAGTGTAGAACTTTTTTGGTTGTTAAAATGTA  100

seq1  GTTATATTTTATTCACACTGACATGGTATGTTTACTACTATTATTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTTTATTCACACTGACATGGTATGTTTACTACTATTATTTTGAA  150

seq1  ATGGATGTTTTTAAATGTCACAAGAATAATTTCTAACACAGTAAATATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTTTTTAAATGTCACAAGAATAATTTCTAACACAGTAAATATAG  200

seq1  ATTAATATAAACAGTGTAGGCCAAGGTTCTTCTTGAGAACTGAGAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATAAACAGTGTAGGCCAAGGTTCTTCTTGAGAACTGAGAGATTC  250

seq1  TTGAAAATTTTTAACAGTGGAAAGTGGTTCTGAGACCAAAATCCCCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTTTTAACAGTGGAAAGTGGTTCTGAGACCAAAATCCCCTGAC  300

seq1  TCCTAACTTAAAGGTACAGCACTCCCTTTCAGAATGCACAGATTTCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTTAAAGGTACAGCACTCCCTTTCAGAATGCACAGATTTCACTT  350

seq1  GCCTTTTTAATGTAGTTTTGCACCATAACGTATGAATAAAGTCATAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTAATGTAGTTTTGCACCATAACGTATGAATAAAGTCATAGTCT  400

seq1  GACATCTGATCTTTATGTGCCTCCTGTTCTGTCTGGTTTTATGTGTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGATCTTTATGTGCCTCCTGTTCTGTCTGGTTTTATGTGTCCAC  450

seq1  TTGACACAAGTTAGTCACCAGAGAGGAAGGAGCCTCTGTTGAAGAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACAAGTTAGTCACCAGAGAGGAAGGAGCCTCTGTTGAAGAAATGC  500

seq1  CTCCGTGAGATCCAGCTGGAAGGCATTTTCCCAATTAGTGATCAGAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGAGATCCAGCTGGAAGGCATTTTCCCAATTAGTGATCAGAAGGG  550

seq1  GAAGGCCCAGCCCGTTGTGGGTGGTAACATCTCTGGGCTGGTGGTCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCCAGCCCGTTGTGGGTGGTAACATCTCTGGGCTGGTGGTCCTGT  600

seq1  TTCTCTAAATAAGAAGACTGAGCAAGCCATGGGGAGCAAACCAATAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAATAAGAAGACTGAGCAAGCCATGGGGAGCAAACCAATAACTT  650

seq1  GCATCCCTCCATGGCCTCTGCATCAGCTTCTGCTCCAGGTCACAGCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCTCCATGGCCTCTGCATCAGCTTCTGCTCCAGGTCACAGCCATG  700

seq1  CTTGAGTTCCAGTTCTGACGACCTCCAATCATGGACTATGATCTTGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTCCAGTTCTGACGACCTCCAATCATGGACTATGATCTTGAACT  750

seq1  AGGAGCCAAATTCATCCTTTCCTCCCCAACTTCTTGTTTGGTCATGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAAATTCATCCTTTCCTCCCCAACTTCTTGTTTGGTCATGGTTT  800

seq1  TTTTATCACAGCAATAGAAACACAAACTACGGAACCTCCCTAATGGGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCACAGCAATAGAAACACAAACTACGGAACCTCCCTAATGGGGAC  850

seq1  TCCTCAAAGCCATGACGTGACTATACCATTCCTTTTCTGTTTTCCCATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAGCCATGACGTGACTATACCATTCCTTTTCTGTTTTCCCATTG  900

seq1  TACCAACATGTCTCTGTTGTATATCTTTTCTAAGGTATTATAAATTCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACATGTCTCTGTTGTATATCTTTTCTAAGGTATTATAAATTCCTG  950

seq1  AAGAATGTGATGTATTTAATTTGCTTGCATGTGCTT-GGTTTCTGACTGA  999
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  AAGAATGTGATGTATTTAATTTGCTTGCATGTGCTTGGGTTTCTGACTGG  1000

seq1  GGGATTCAAGGTCATTAATAATTCAGAGGTCATGTGTTAAAG-ACAGC-T  1047
       |||||||||||||||||||||||||| |||||||||||||| ||||| |
seq2  AGGATTCAAGGTCATTAATAATTCAGA-GTCATGTGTTAAAGAACAGCTT  1049

seq1  CTGTGGGGAAGCT-GTGCTAGGCTCTTCCTATTGC-AGCCAAAGTTGGAT  1095
      ||||||||||||| ||||||||||||  ||| ||| |||||||| | |||
seq2  CTGTGGGGAAGCTGGTGCTAGGCTCT--CTAATGCAAGCCAAAGGTTGAT  1097

seq1  C--AATCTCACACTCTCCT-ACAG-CTG--ACTCAGGAGTATGTATTTAT  1139
      |  | |||||||||||||| |||| |||  |||||||| |||||| ||| 
seq2  CCAATTCTCACACTCTCCTAACAGCCTGACACTCAGGA-TATGTA-TTAA  1145

seq1  TCACTTTACATTTAACAAATA-CTTCTTGC  1168
      |||| ||||| |||||||||| ||||||||
seq2  TCAC-TTACA-TTAACAAATACCTTCTTGC  1173