BAC Information

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BAC

Clone NameB6Ng01-269O13
Chromosome13 (Build37)
Map Location 25,662,798 - 25,816,710
singlet/doubletdoublet
Overlap geneLOC214973
Upstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8
Downstream geneLOC666221, LOC100042180, LOC100042191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269O13.bB6Ng01-269O13.g
ACCGA072385GA072386
length1,1951,211
definitionB6Ng01-269O13.b B6Ng01-269O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,815,510 - 25,816,710)(25,662,798 - 25,664,001)
sequence
gaattcaggagcccccagaggccagaaaaggttataggttcccgtggatc
tagtattacagaatattgtgagtacctgtgtagctgctaggaacagaacc
ttggtcctctgcaagatcagtcagcactgagtccattttagagcatccga
gtttgcccagctatgcttaaaactgctgttattgaggcagagcccactca
cctaccttagcgaaggttgtattggtacagggagacacactgtctcgagg
caacacactgactcccaggctgctaagaaagcaggttttgatccttgcat
acacatttttcagacatagtgggatgtagacatggaaatttctttctttg
tccgtgagtaattatgtgtcttttaaagacaagctgtctctaagcatgct
ctaataaaatctctagcttccagcactaaaacatttactcagaaatgata
cttaaatccaggctaaggaaagtctcagactgagataggaggatttatgt
ggtgttacaaaaggttttctattcaccaaataatgacttcacagccaaat
aaatatttgagtaactgctcagttgccttattaatcaaactaatgaaaac
aaaaagtttaagctgaaatagttttacctataaacatggcaaatatgtga
aaagtataagacttgaatgtcaatttccagtccaagacattataaaaaat
gaaagctggttaacaaaaagaaatttagaatcagcctaaatacctgtaat
taatcaataagtggtcaattattcagccattgaaataatgttctcaaaaa
ctgttcaaagacacagtgaaatgactatcacaaaacaacttcccaggcaa
gatataaaaatgtaattcctcaaactatacataagcatgtctacaatata
gcattgtgatgctctttctaagtggccaaattatcatcagttttaatatt
tgaatgtcttaccattttcacatattgtgccatgaaagtgtatcattttt
aattaaaaataaatagaatatgtcatccacctcagtaacgcttacaacac
tgaccagtagaaagagcgagtgagagagaggatggagatggagagagaga
gagaaggattccaaaggcaattgcctcaatctagagagacctggaaaggt
ctcggaatggatacggttaaaaaaatccattaactttccccccat
gaattcacccctgggattgtattcagagatatgaaagacggaagatgcct
cagagccctcatctccaacgaaaatatcatgacaatctgacagctacaaa
aacaaataagccaaaggcataggagagaataaagggggcaaaaacatccc
aaccagcatggagaaaaaggctgtgggggcaaacttccctctccctaaac
actttagagactttgcttttattttaaattcatttcatttgaaatacaac
tggcattttttttgtaaattttgagtgcagaaattacattaaattataaa
aaaacataattaaaataatttccatggcttcatttttaagagtattttct
ttcttttgttttataatgttataaataaataatttcatttttggacataa
ttatagaaaccatatttatcctaaaacttcatttaatattaaattataaa
cagtttattagattacaaatgttacttgaaaatttcattaacaatgactg
catgcaattccaacaaataaatgcatatttttctatggtcaagcactcat
ctttttccataaactttctatttaaaaattttttttttgcttagaacttt
tctctataaaaatctctacacattcatgtttatttacatgcaaaaggcat
ctagatttataaaactgggtattaacatcttatggcttgagataattgta
aatctctagttcaagctcccccagtattccaggaattagaagagtataac
tggaatgtatttttgctagaactagttgctgaatagaagaggcacaactc
ttcagagagtaagcacagtttctgtaggaacagaggaaaataaattataa
cattgagaaatacagcagtgtgatggtatctggaataataagggaaataa
attcagatagaaaatataacaaaattctattactgaaatgtaaaatagaa
atcaaaaggagaattgtgatcttaacagattagacaaaactgtagagctt
attaattcataaggaagctaaatttaaagaaataatccagaatatttata
taaaatatagagaaatggggtacatggaaaatatagaggggagatattac
ttgtttaggcatctaaacaagagctatgtctaaacatacctgaatgaacc
tgtgccatcagaaagtttataagtactgcctgatcctggagaaagaacac
attatgagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25815510_25816710
seq2: B6Ng01-269O13.b_47_1241 (reverse)

seq1  ATGGGGGGAAAGGTAATGATTTTTTTTTTACCCCTAATTCAATCAGA---  47
      |||||||||||| |||||    |||||||| || | || || || ||   
seq2  ATGGGGGGAAAGTTAATG--GATTTTTTTAACCGT-ATCCATTCCGAGAC  47

seq1  CTTTCCA-GTCTCTCTAGAATTGAGGCAATTGCCTTTTGCATCTCTCTCT  96
      ||||||| |||||||||| |||||||||||||||||| | |||  |||||
seq2  CTTTCCAGGTCTCTCTAG-ATTGAGGCAATTGCCTTTGGAATCCTTCTCT  96

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTTACTT  146
      |||||||||  ||||  ||   ||||||||| ||| ||||||   ||| |
seq2  CTCTCTCTCCATCTCCATC---CTCTCTCTCACTCGCTCTTT--CTAC-T  140

seq1  GGTCAGTGTTGTAAGCGTTACTGA-GTGGATGACATTATTCTATTTATTT  195
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  GGTCAGTGTTGTAAGCGTTACTGAGGTGGATGACA-TATTCTATTTATTT  189

seq1  TTAATTAAAAATGATACACTTTCATGGCACAATATGTGAAAATGGTAAGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAAAATGATACACTTTCATGGCACAATATGTGAAAATGGTAAGA  239

seq1  CATTCAAATATTAAAACTGATGATAATTTGGCCACTTAGAAAGAGCATCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAATATTAAAACTGATGATAATTTGGCCACTTAGAAAGAGCATCA  289

seq1  CAATGCTATATTGTAGACATGCTTATGTATAGTTTGAGGAATTACATTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTATATTGTAGACATGCTTATGTATAGTTTGAGGAATTACATTTT  339

seq1  TATATCTTGCCTGGGAAGTTGTTTTGTGATAGTCATTTCACTGTGTCTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTGCCTGGGAAGTTGTTTTGTGATAGTCATTTCACTGTGTCTTT  389

seq1  GAACAGTTTTTGAGAACATTATTTCAATGGCTGAATAATTGACCACTTAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTTTTGAGAACATTATTTCAATGGCTGAATAATTGACCACTTAT  439

seq1  TGATTAATTACAGGTATTTAGGCTGATTCTAAATTTCTTTTTGTTAACCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATTACAGGTATTTAGGCTGATTCTAAATTTCTTTTTGTTAACCA  489

seq1  GCTTTCATTTTTTATAATGTCTTGGACTGGAAATTGACATTCAAGTCTTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATTTTTTATAATGTCTTGGACTGGAAATTGACATTCAAGTCTTA  539

seq1  TACTTTTCACATATTTGCCATGTTTATAGGTAAAACTATTTCAGCTTAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCACATATTTGCCATGTTTATAGGTAAAACTATTTCAGCTTAAA  589

seq1  CTTTTTGTTTTCATTAGTTTGATTAATAAGGCAACTGAGCAGTTACTCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTTTCATTAGTTTGATTAATAAGGCAACTGAGCAGTTACTCAA  639

seq1  ATATTTATTTGGCTGTGAAGTCATTATTTGGTGAATAGAAAACCTTTTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTGGCTGTGAAGTCATTATTTGGTGAATAGAAAACCTTTTGT  689

seq1  AACACCACATAAATCCTCCTATCTCAGTCTGAGACTTTCCTTAGCCTGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACATAAATCCTCCTATCTCAGTCTGAGACTTTCCTTAGCCTGGA  739

seq1  TTTAAGTATCATTTCTGAGTAAATGTTTTAGTGCTGGAAGCTAGAGATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTATCATTTCTGAGTAAATGTTTTAGTGCTGGAAGCTAGAGATTT  789

seq1  TATTAGAGCATGCTTAGAGACAGCTTGTCTTTAAAAGACACATAATTACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGCATGCTTAGAGACAGCTTGTCTTTAAAAGACACATAATTACT  839

seq1  CACGGACAAAGAAAGAAATTTCCATGTCTACATCCCACTATGTCTGAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGACAAAGAAAGAAATTTCCATGTCTACATCCCACTATGTCTGAAAA  889

seq1  ATGTGTATGCAAGGATCAAAACCTGCTTTCTTAGCAGCCTGGGAGTCAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGCAAGGATCAAAACCTGCTTTCTTAGCAGCCTGGGAGTCAGT  939

seq1  GTGTTGCCTCGAGACAGTGTGTCTCCCTGTACCAATACAACCTTCGCTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCCTCGAGACAGTGTGTCTCCCTGTACCAATACAACCTTCGCTAA  989

seq1  GGTAGGTGAGTGGGCTCTGCCTCAATAACAGCAGTTTTAAGCATAGCTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTGAGTGGGCTCTGCCTCAATAACAGCAGTTTTAAGCATAGCTGG  1039

seq1  GCAAACTCGGATGCTCTAAAATGGACTCAGTGCTGACTGATCTTGCAGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTCGGATGCTCTAAAATGGACTCAGTGCTGACTGATCTTGCAGAG  1089

seq1  GACCAAGGTTCTGTTCCTAGCAGCTACACAGGTACTCACAATATTCTGTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGTTCTGTTCCTAGCAGCTACACAGGTACTCACAATATTCTGTA  1139

seq1  ATACTAGATCCACGGGAACCTATAACCTTTTCTGGCCTCTGGGGGCTCCT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGATCCACGGGAACCTATAACCTTTTCTGGCCTCTGGGGGCTCCT  1189

seq1  GAATTC  1201
      ||||||
seq2  GAATTC  1195

seq1: chr13_25662798_25664001
seq2: B6Ng01-269O13.g_68_1278

seq1  GAATTCACCCCTGGGATTGTATTCAGAGATATGAAAGACGGAAGATGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCTGGGATTGTATTCAGAGATATGAAAGACGGAAGATGCCT  50

seq1  CAGAGCCCTCATCTCCAACGAAAATATCATGACAATCTGACAGCTACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCTCATCTCCAACGAAAATATCATGACAATCTGACAGCTACAAA  100

seq1  AACAAATAAGCCAAAGGCATAGGAGAGAATAAAGGGGGCAAAAACATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAGCCAAAGGCATAGGAGAGAATAAAGGGGGCAAAAACATCCC  150

seq1  AACCAGCATGGAGAAAAAGGCTGTGGGGGCAAACTTCCCTCTCCCTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCATGGAGAAAAAGGCTGTGGGGGCAAACTTCCCTCTCCCTAAAC  200

seq1  ACTTTAGAGACTTTGCTTTTATTTTAAATTCATTTCATTTGAAATACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGAGACTTTGCTTTTATTTTAAATTCATTTCATTTGAAATACAAC  250

seq1  TGGCATTTTTTTTGTAAATTTTGAGTGCAGAAATTACATTAAATTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTTTTTTGTAAATTTTGAGTGCAGAAATTACATTAAATTATAAA  300

seq1  AAAACATAATTAAAATAATTTCCATGGCTTCATTTTTAAGAGTATTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAATTAAAATAATTTCCATGGCTTCATTTTTAAGAGTATTTTCT  350

seq1  TTCTTTTGTTTTATAATGTTATAAATAAATAATTTCATTTTTGGACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTTTTATAATGTTATAAATAAATAATTTCATTTTTGGACATAA  400

seq1  TTATAGAAACCATATTTATCCTAAAACTTCATTTAATATTAAATTATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAACCATATTTATCCTAAAACTTCATTTAATATTAAATTATAAA  450

seq1  CAGTTTATTAGATTACAAATGTTACTTGAAAATTTCATTAACAATGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATTAGATTACAAATGTTACTTGAAAATTTCATTAACAATGACTG  500

seq1  CATGCAATTCCAACAAATAAATGCATATTTTTCTATGGTCAAGCACTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATTCCAACAAATAAATGCATATTTTTCTATGGTCAAGCACTCAT  550

seq1  CTTTTTCCATAAACTTTCTATTTAAAAATTTTTTTTTTGCTTAGAACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCATAAACTTTCTATTTAAAAATTTTTTTTTTGCTTAGAACTTT  600

seq1  TCTCTATAAAAATCTCTACACATTCATGTTTATTTACATGCAAAAGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATAAAAATCTCTACACATTCATGTTTATTTACATGCAAAAGGCAT  650

seq1  CTAGATTTATAAAACTGGGTATTAACATCTTATGGCTTGAGATAATTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTATAAAACTGGGTATTAACATCTTATGGCTTGAGATAATTGTA  700

seq1  AATCTCTAGTTCAAGCTCCCCCAGTATTCCAGGAATTAGAAGAGTATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTAGTTCAAGCTCCCCCAGTATTCCAGGAATTAGAAGAGTATAAC  750

seq1  TGGAATGTATTTTTGCTAGAACTAGTTGCTGAATAGAAGAGGCACAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTATTTTTGCTAGAACTAGTTGCTGAATAGAAGAGGCACAACTC  800

seq1  TTCAGAGAGTAAGCACAGTTTCTGTAGGAACAGAGGAAAATAAATTATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAGTAAGCACAGTTTCTGTAGGAACAGAGGAAAATAAATTATAA  850

seq1  CATTGAGAAATACAGCAGTGTGATGGTATCTGGAATAATAAGGGAAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGAAATACAGCAGTGTGATGGTATCTGGAATAATAAGGGAAATAA  900

seq1  ATTCAGATAGAAAATATAACAAAATTCTATTACTGAAATGTAAAATAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATAGAAAATATAACAAAATTCTATTACTGAAATGTAAAATAGAA  950

seq1  ATCAAAAGGAGAATTGTGATCTTAACAGATTAGACAAAACTGTAGAGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGGAGAATTGTGATCTTAACAGATTAGACAAAACTGTAGAGCTT  1000

seq1  A-TAATTCATAAGGAAGCTAAATTTAAAGAAAT-ATCCAGAATA-TTATA  1047
      | ||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  ATTAATTCATAAGGAAGCTAAATTTAAAGAAATAATCCAGAATATTTATA  1050

seq1  T-AAATATAGAGAAAT-GGGTACATGGAAAATATAGAGGAGA-ATATTAC  1094
      | |||||||||||||| |||||||||||||||||||||| || |||||||
seq2  TAAAATATAGAGAAATGGGGTACATGGAAAATATAGAGGGGAGATATTAC  1100

seq1  TTGTTTAAGGCATCT-AACAAGAGCTATGTCTAAACATTAACTG-ATG-A  1141
      |||||| |||||||| ||||||||||||||||||||| || ||| ||| |
seq2  TTGTTT-AGGCATCTAAACAAGAGCTATGTCTAAACA-TACCTGAATGAA  1148

seq1  CCTGTGCCAATCAGGAAAAGGTTTTAATAAGTACTG-CTGAT-CTGAAGA  1189
      |||||||| |||||  ||||   || |||||||||| ||||| ||| |||
seq2  CCTGTGCC-ATCAG--AAAG---TTTATAAGTACTGCCTGATCCTGGAGA  1192

seq1  AAG---ACATTAT-AGAAT  1204
      |||   ||||||| |||||
seq2  AAGAACACATTATGAGAAT  1211