BAC Information

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BAC

Clone NameB6Ng01-271H01
Chromosome13 (Build37)
Map Location 77,027,186 - 77,028,105
singlet/doubletsinglet
Overlap geneMctp1
Upstream geneRhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, LOC666603
Downstream geneEG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271H01.bB6Ng01-271H01.g
ACCGA073520GA073521
length1,049932
definitionB6Ng01-271H01.b B6Ng01-271H01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgcttagctctgtgccccattttttaaaggggttatttgatt
ttctagagtccagtattttgagttctttgtatatattggatattggtccc
cctctctgatttaggattgggaaagatcctttcccaatctctggtggctt
ttttatgttattgatggtatcttttgacttacagaagctttgaaatttta
tgaagtcccatttatcgattcttgatcttacaaaacaaatcattgttcta
ttgaggaatttttttcccctgtgcccttatctttgaggcttttccccact
ttctcctctataagtttcaatgtctctggctttctgtggagtcccttgat
ccacttagacttgagctttgtacaaggagataaaaatggatggattcgca
ttcttctacatgataactgccagttgtgccagcaccatttgttgaaaatg
ctgtctattttccattggatagttttagcccccttgtcaaaaatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattgcactgat
ctacctgtctgtcactgtaccagtaccatgcagttcttaccacaattgct
ctgtagtacagcttgaggtcaggcatagtgactccaaaagaggttctttt
attgttgagaatattttttgcaatcctaggttttttcttattccgcatta
atttgcagattgccctttataacactgtgaagaattgagttggaattttg
atagggattgcattgagtctgtagattgctatcaccaagatggccgtttt
tactatattgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttcgatttctttcttcagagacaaatcttttacttccttagtt
agagtcacacaaaggtattttatattttttgtgactattgtgaaagggtg
tctttccctaattccttctcagcctgttcatcccttatgtagagaaagga
cctgattgtcctgagttaatttttagtccaactatttcactgaagcttg
gaattccatttcaaatccacaaaggaaatggtaggatttctgttcttcat
atgagaaaactaaaagaaatccaatagctgcccaaggccccagagctaat
aatgagggctcttggatgcctctgagtctgatgtgagtatttgcgctata
tctgtctcctctcacatctctcctcgccatagcagacaatacaaggctag
atgcaaaagacttctagcatactttctacatacagggtaatgcacagaat
tctcagtttgtcagtttttttgagacaggctctcatgtagttcaggccag
tctcaaacttgctatgtagctagaggatgacattcaactactgatcctcc
tgcctccagctttcaagtactagaattgtacacacgacccatgctgcctg
gatttagtacccttttctgtctgtggaggttgtaagtgctgttataattt
tgactaatatttcattaagactttctactgtggaattctaattgtgaacc
acaacctatagttttaaacctatagtttaaaaaagaaaatcaaatacttg
aagtattttcagtttctagtgagcagggatagctaatgcaggattaggtg
ttttgtgtgtaaatggaggcatggattctaaggatgtgaaatgccaaagg
cccaaattaaaatgtaggtactgggactaagatcccaggatgaaaaggaa
acgctacaaattgggtgatggggaaagagatgggtaaagtatccccaaag
ggatggaattgagtaaagtttaaatactgcataaatttcattttttggtt
gatgtaatattagaaacctagaaccttgtccctctatactatgttccatt
gaaaggaaaaggcaatttcaagagtgagatatccggacatggtcaacaac
tgtatgttttttattttgtaattccatgtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_77027186_77028105
seq2: B6Ng01-271H01.g_68_999

seq1  GAATTCCATTTCAAATCCACAAAGGAAATGGTAGGATTTCTGTTCTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTCAAATCCACAAAGGAAATGGTAGGATTTCTGTTCTTCAT  50

seq1  ATGAGAAAACTAAAAGAAATCCAATAGCTGCCCAAGGCCCCAGAGCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAACTAAAAGAAATCCAATAGCTGCCCAAGGCCCCAGAGCTAAT  100

seq1  AATGAGGGCTCTTGGATGCCTCTGAGTCTGATGTGAGTATTTGCGCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGCTCTTGGATGCCTCTGAGTCTGATGTGAGTATTTGCGCTATA  150

seq1  TCTGTCTCCTCTCACATCTCTCCTCGCCATAGCAGACAATACAAGGCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCCTCTCACATCTCTCCTCGCCATAGCAGACAATACAAGGCTAG  200

seq1  ATGCAAAAGACTTCTAGCATACTTTCTACATACAGGGTAATGCACAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAGACTTCTAGCATACTTTCTACATACAGGGTAATGCACAGAAT  250

seq1  TCTCAGTTTGTCAGTTTTTTTGAGACAGGCTCTCATGTAGTTCAGGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTTGTCAGTTTTTTTGAGACAGGCTCTCATGTAGTTCAGGCCAG  300

seq1  TCTCAAACTTGCTATGTAGCTAGAGGATGACATTCAACTACTGATCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACTTGCTATGTAGCTAGAGGATGACATTCAACTACTGATCCTCC  350

seq1  TGCCTCCAGCTTTCAAGTACTAGAATTGTACACACGACCCATGCTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAGCTTTCAAGTACTAGAATTGTACACACGACCCATGCTGCCTG  400

seq1  GATTTAGTACCCTTTTCTGTCTGTGGAGGTTGTAAGTGCTGTTATAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGTACCCTTTTCTGTCTGTGGAGGTTGTAAGTGCTGTTATAATTT  450

seq1  TGACTAATATTTCATTAAGACTTTCTACTGTGGAATTCTAATTGTGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATATTTCATTAAGACTTTCTACTGTGGAATTCTAATTGTGAACC  500

seq1  ACAACCTATAGTTTTAAACCTATAGTTTAAAAAAGAAAATCAAATACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTATAGTTTTAAACCTATAGTTTAAAAAAGAAAATCAAATACTTG  550

seq1  AAGTATTTTCAGTTTCTAGTGAGCAGGGATAGCTAATGCAGGATTAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTCAGTTTCTAGTGAGCAGGGATAGCTAATGCAGGATTAGGTG  600

seq1  TTTTGTGTGTAAATGGAGGCATGGATTCTAAGGATGTGAAATGCCAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTGTAAATGGAGGCATGGATTCTAAGGATGTGAAATGCCAAAGG  650

seq1  CCCAAATTAAAATGTAGGTACTGGGACTAAGATCCCAGGATGAAAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATTAAAATGTAGGTACTGGGACTAAGATCCCAGGATGAAAAGGAA  700

seq1  ACGCTACAAATTGGGTGATGGGGAAAGAGATGGGTAAAGTAT-CCCAAAG  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACGCTACAAATTGGGTGATGGGGAAAGAGATGGGTAAAGTATCCCCAAAG  750

seq1  GGATGGAATTGAGTAAAG-TTAAATACTGCATAAATTTCA-TTTTTGGTT  797
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  GGATGGAATTGAGTAAAGTTTAAATACTGCATAAATTTCATTTTTTGGTT  800

seq1  GATGTAATATT-GAAACCTAGGACCTTGT-CCTCT-TTCTATGTTCCAT-  843
      ||||||||||| ||||||||| ||||||| ||||| | ||||||||||| 
seq2  GATGTAATATTAGAAACCTAGAACCTTGTCCCTCTATACTATGTTCCATT  850

seq1  -GAAGGGAAAGGCAA-TTCAAGAGTGAGATATCCGGACATGTCCAAC-AC  890
        |||| |||||||| |||||||||||||||||||||||||  |||| ||
seq2  GAAAGGAAAAGGCAATTTCAAGAGTGAGATATCCGGACATGGTCAACAAC  900

seq1  TGTATGTTTTATA-TTTGT-ATTTCATGTGCA  920
      |||||||||| || ||||| ||| ||||||||
seq2  TGTATGTTTTTTATTTTGTAATTCCATGTGCA  932