BAC Information

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BAC

Clone NameB6Ng01-272J12
Chromosome13 (Build37)
Map Location 54,638,335 - 54,639,504
singlet/doubletsinglet
Overlap gene4732471D19Rik
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543
Downstream gene4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272J12.bB6Ng01-272J12.g
ACCGA074382GA074383
length2701,156
definitionB6Ng01-272J12.b B6Ng01-272J12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgtgctaaaacgatctggccctgggcttttgtggtttttggttgtttgtt
tgttggttggttggttggttggttggttgggagattttaatgattgcttc
tatttccttagggattatagaactatttaaattgtttagctgattttgaa
ttattttgatttaactttggtaagaaaattgtccatttcatttctattat
ccaatcttgtggaatacagaattttaaagtaagacctaatgattctttcg
atttcctctttatctgttgc
gaattctgtagaccaggctggccttgaactcagaaatcggcttgcctctg
cctccccagtgctgggattaaaggcgtgcgccacaaagtagtggatgaca
gctatagcggccggggctcccgaccactgagccttctctccagcactgct
gctcattcgtaacagcacttctggcagctagaagacaatttcttcaaagc
tttgcataaaagttattcttaaatatgtaaactaaactaagaatatttac
ctacttattagtcaaaacatgagaggaagaaaggtattttcaaacatgac
ttctcaaaattcttcctttatatatatatatattctttggaataaggaat
actccttgttactcaggagtccacatggtcaattcagagaagtttcctgt
gattctccacagtgttgggagttaccccactcatggtatttagtaataag
aaagatctcatccccttagtctctgggtttatctagagcaactgagaagc
acctagcaggcccgtgtctgagagaggacttcctaaaataatcaggcctc
ataagcatccaacttttctctaaggaatggtccaatctactgccatacaa
agcctgaataggtaactgagatagtaagacagtggaagggcctggctgga
gaagtggctcactggcatgtggccttggggctgttcactgctttgcccct
atcctcttagttcctttgcttcctggctgcttctgccatgaagaccgaag
tctctgaatctgtgaacttaaataagtcctctctctctctgtcacttgtc
ttctcacaggtgccagtgaccatcagctgacacactgacacactgggctt
tacttgttacaactagaatctctattctctcataccagagctctagtatc
tcattacctgacattgtgaggctgtttgtcacatgacagaacagtgtttg
caatggattgctgtagtgctgccgctgtctctcagatctgctggaagtca
tcttccaggtttgcactacgtagcgtagaaagaagaactcgtcagcagag
tttgtcctgtgaaaaagaataagaagtcagcttgcttttcagtccctgca
tgatgaacgtggctgccatgcgtcagcacgttaatctgttattcgagaga
gatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54638335_54639504
seq2: B6Ng01-272J12.g_64_1219 (reverse)

seq1  GAAATCTCTCTCTGAT-ACAGATAAACGTGCTGCCGCATGGCAGCCCACA  49
      ||||||||||||  || |||||| ||||||||| |||||||||||   ||
seq2  GAAATCTCTCTCGAATAACAGATTAACGTGCTGACGCATGGCAGC---CA  47

seq1  CTTCCCTGTCATCCAAGGGACTGAAAAGCAACCCTGACTTCTTATTCTTT  99
      | | |   |||| | ||||||||||||||||  |||||||||||||||||
seq2  CGTTC--ATCATGC-AGGGACTGAAAAGCAA-GCTGACTTCTTATTCTTT  93

seq1  TTTCCACAGGGACAAACTCTGCCTGGACGAGTTC-TCTTTCTACGCTACG  148
      ||  |||| |||||||||||||   ||||||||| |||||||||||||||
seq2  TT--CACA-GGACAAACTCTGC--TGACGAGTTCTTCTTTCTACGCTACG  138

seq1  TAGTGCAAACCCTGGAAGATGACTTCCAGCAGATCTTGAGGAGACAGCGG  198
      ||||||||| ||||||||||||||||||||||||| ||| ||||||||||
seq2  TAGTGCAAA-CCTGGAAGATGACTTCCAGCAGATC-TGA-GAGACAGCGG  185

seq1  CAGCACCTACAGCAATCCATTGCAAACACTGTTCTGTCATGTGACAAACA  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCA-CTACAGCAATCCATTGCAAACACTGTTCTGTCATGTGACAAACA  234

seq1  GCCTCACAATGTCAGGTAATGAGATACTAGAGCTCTGGTATGAGAGAATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACAATGTCAGGTAATGAGATACTAGAGCTCTGGTATGAGAGAATA  284

seq1  GAGATTCTAGTTGTAACAAGTAAAGCCCAGTGTGTCAGTGTGTCAGCTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTAGTTGTAACAAGTAAAGCCCAGTGTGTCAGTGTGTCAGCTGA  334

seq1  TGGTCACTGGCACCTGTGAGAAGACAAGTGACAGAGAGAGAGAGGACTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTGGCACCTGTGAGAAGACAAGTGACAGAGAGAGAGAGGACTTA  384

seq1  TTTAAGTTCACAGATTCAGAGACTTCGGTCTTCATGGCAGAAGCAGCCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTCACAGATTCAGAGACTTCGGTCTTCATGGCAGAAGCAGCCAG  434

seq1  GAAGCAAAGGAACTAAGAGGATAGGGGCAAAGCAGTGAACAGCCCCAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAGGAACTAAGAGGATAGGGGCAAAGCAGTGAACAGCCCCAAGG  484

seq1  CCACATGCCAGTGAGCCACTTCTCCAGCCAGGCCCTTCCACTGTCTTACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGCCAGTGAGCCACTTCTCCAGCCAGGCCCTTCCACTGTCTTACT  534

seq1  ATCTCAGTTACCTATTCAGGCTTTGTATGGCAGTAGATTGGACCATTCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTTACCTATTCAGGCTTTGTATGGCAGTAGATTGGACCATTCCT  584

seq1  TAGAGAAAAGTTGGATGCTTATGAGGCCTGATTATTTTAGGAAGTCCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAAGTTGGATGCTTATGAGGCCTGATTATTTTAGGAAGTCCTCT  634

seq1  CTCAGACACGGGCCTGCTAGGTGCTTCTCAGTTGCTCTAGATAAACCCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACACGGGCCTGCTAGGTGCTTCTCAGTTGCTCTAGATAAACCCAG  684

seq1  AGACTAAGGGGATGAGATCTTTCTTATTACTAAATACCATGAGTGGGGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGGGGATGAGATCTTTCTTATTACTAAATACCATGAGTGGGGTA  734

seq1  ACTCCCAACACTGTGGAGAATCACAGGAAACTTCTCTGAATTGACCATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAACACTGTGGAGAATCACAGGAAACTTCTCTGAATTGACCATGT  784

seq1  GGACTCCTGAGTAACAAGGAGTATTCCTTATTCCAAAGAATATATATATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCTGAGTAACAAGGAGTATTCCTTATTCCAAAGAATATATATATA  834

seq1  TATAAAGGAAGAATTTTGAGAAGTCATGTTTGAAAATACCTTTCTTCCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGAAGAATTTTGAGAAGTCATGTTTGAAAATACCTTTCTTCCTC  884

seq1  TCATGTTTTGACTAATAAGTAGGTAAATATTCTTAGTTTAGTTTACATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTTGACTAATAAGTAGGTAAATATTCTTAGTTTAGTTTACATAT  934

seq1  TTAAGAATAACTTTTATGCAAAGCTTTGAAGAAATTGTCTTCTAGCTGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATAACTTTTATGCAAAGCTTTGAAGAAATTGTCTTCTAGCTGCC  984

seq1  AGAAGTGCTGTTACGAATGAGCAGCAGTGCTGGAGAGAAGGCTCAGTGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCTGTTACGAATGAGCAGCAGTGCTGGAGAGAAGGCTCAGTGGT  1034

seq1  CGGGAGCCCCGGCCGCTATAGCTGTCATCCACTACTTTGTGGCGCACGCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGCCCCGGCCGCTATAGCTGTCATCCACTACTTTGTGGCGCACGCC  1084

seq1  TTTAATCCCAGCACTGGGGAGGCAGAGGCAAGCCGATTTCTGAGTTCAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACTGGGGAGGCAGAGGCAAGCCGATTTCTGAGTTCAAG  1134

seq1  GCCAGCCTGGTCTACAGAATTC  1170
      ||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACAGAATTC  1156