BAC Information

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BAC

Clone NameB6Ng01-273C18
Chromosome13 (Build37)
Map Location 26,121,132 - 26,183,084
singlet/doubletdoublet
Overlap genenone
Upstream geneDcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273C18.bB6Ng01-273C18.g
ACCGA074811GA074812
length8671,125
definitionB6Ng01-273C18.b B6Ng01-273C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,182,219 - 26,183,084)(26,121,132 - 26,122,268)
sequence
gaattctatttcagctgtaaagttgctttatagagccactatacgactta
tacaagtactccaggtggtaacacagtcaaatgtaaggcgagttccaatt
tgattttattagtatactttacaattctacagatacacaagcttcatagc
tcataaacaccaaggtcttgaagactttaccttcctataaagtgcctttt
ggagaaggctactgcctccaatctgtaaatatattgcttcccttgaggga
gtccagatttatctcttctcaatttataagcaaatcccctgttaacctat
ctcacctcttcaccaataatgagctggtttatgattgatagctagtgagt
ccactggaggcaattgcaactaaagttaagaaaataatgaagggaggagc
taataaattcagcactgtttagtggatgaaatgaaatcaactttatagtg
cacagctcccatggtgaacaaagaactgatggtttcatgtgatatgtcag
tgatgacaataggatgcaagctagaaattattccttcaatccagtactgc
aaagctgtttccccagcagtcccagtgaattcctgctgataaatagttat
gtgttcatcattgttttagtttctttcaatatttttactcacattaagtg
tgttactgttatattttaattgcacttagtactcagattcataatgatat
tttcacataagtatatgatatgctttgaccattctcgatccttttacttt
cccattcaacctctggattctacaaacacacatttgtttacacacacaca
aacacacaggtagggaagaagaagaggaggaagataacgaggaggaggag
gaggaggagggaggagg

gaattctctgctacttctctagtactatgtttgattgagtgctggcatgt
tcctcgccatgagaacaaacctctgaacctataagaaagcacccaattaa
acatattattttaataagagtttcctacaacaacgtatctctttttaaca
aaaggataatcttttcaacaaaaggataatgactaagacagttgtgcacc
tactgtcatcctgatcaaatgatgtcatagatctctttttatgcagattt
tgaatgtttttctgtaagtagcaatgaaagacctttttccacaggactat
tgcccagagccctagaagtatgacagctattctaggcttacccttttaat
tgaaacttcatttctagaggctgtaagatggaacaatgggtaggaactct
tgctacacaaacatcatatgaatttgaatccccagaacacatgtaaaatt
caagagttagcatgtgcttggtgcatgtgggtactggggcaagaagattg
ctagggctggctggaagcaagccttgctctaagtgtggggaaaaggctct
gtctcagagaaataaggccaagagtggtaaatgaggacaccgtgtgttct
cctctgacctctgcatgtttccacatatgtgctctcagatgcatattcta
ccctacacaggtacaatgcgcatatcacactcatttgcaaacaaagaagt
tctttcgagaccgggtctgtagaccagactgattttaaatacagaaagat
ctatcaacacgtgactccagagttagaattaaaggtaagctccatacacc
tagccctgttttaatttagactctagagaatttgttttctactcaaatct
cttttgaggattgctagataagtaaagacaaagaaaaaaatgttgaaaat
gacatttcaataactgagaagtttagggggtgctaggcttacctgatatg
atagaataggtgacatattggcataattggacaggaatatttgacttgat
tctcagccgtacacatgttgaaatgggtgtgacagtcatcagaaaaattt
atctgagtaagaaatcagaataagcaagcatcatggcctggcgtgcacat
ctctctcagtctctgaactttataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26182219_26183084
seq2: B6Ng01-273C18.b_46_912 (reverse)

seq1  CCTCCT-CCTCCTCCTCCTCCTCCTCCTCGTTATCTTCCTCCTCTTCTTC  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCTCCTCCTCCTCCTCCTCCTCGTTATCTTCCTCCTCTTCTTC  50

seq1  TTCCCTACCTGTGTGTTTGTGTGTGTGTAAACAAATGTGTGTTTGTAGAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACCTGTGTGTTTGTGTGTGTGTAAACAAATGTGTGTTTGTAGAA  100

seq1  TCCAGAGGTTGAATGGGAAAGTAAAAGGATCGAGAATGGTCAAAGCATAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGTTGAATGGGAAAGTAAAAGGATCGAGAATGGTCAAAGCATAT  150

seq1  CATATACTTATGTGAAAATATCATTATGAATCTGAGTACTAAGTGCAATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTTATGTGAAAATATCATTATGAATCTGAGTACTAAGTGCAATT  200

seq1  AAAATATAACAGTAACACACTTAATGTGAGTAAAAATATTGAAAGAAACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAACAGTAACACACTTAATGTGAGTAAAAATATTGAAAGAAACT  250

seq1  AAAACAATGATGAACACATAACTATTTATCAGCAGGAATTCACTGGGACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATGATGAACACATAACTATTTATCAGCAGGAATTCACTGGGACT  300

seq1  GCTGGGGAAACAGCTTTGCAGTACTGGATTGAAGGAATAATTTCTAGCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGAAACAGCTTTGCAGTACTGGATTGAAGGAATAATTTCTAGCTT  350

seq1  GCATCCTATTGTCATCACTGACATATCACATGAAACCATCAGTTCTTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTATTGTCATCACTGACATATCACATGAAACCATCAGTTCTTTGT  400

seq1  TCACCATGGGAGCTGTGCACTATAAAGTTGATTTCATTTCATCCACTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGGGAGCTGTGCACTATAAAGTTGATTTCATTTCATCCACTAAA  450

seq1  CAGTGCTGAATTTATTAGCTCCTCCCTTCATTATTTTCTTAACTTTAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGAATTTATTAGCTCCTCCCTTCATTATTTTCTTAACTTTAGTT  500

seq1  GCAATTGCCTCCAGTGGACTCACTAGCTATCAATCATAAACCAGCTCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGCCTCCAGTGGACTCACTAGCTATCAATCATAAACCAGCTCATT  550

seq1  ATTGGTGAAGAGGTGAGATAGGTTAACAGGGGATTTGCTTATAAATTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGAAGAGGTGAGATAGGTTAACAGGGGATTTGCTTATAAATTGAG  600

seq1  AAGAGATAAATCTGGACTCCCTCAAGGGAAGCAATATATTTACAGATTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAAATCTGGACTCCCTCAAGGGAAGCAATATATTTACAGATTGG  650

seq1  AGGCAGTAGCCTTCTCCAAAAGGCACTTTATAGGAAGGTAAAGTCTTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTAGCCTTCTCCAAAAGGCACTTTATAGGAAGGTAAAGTCTTCAA  700

seq1  GACCTTGGTGTTTATGAGCTATGAAGCTTGTGTATCTGTAGAATTGTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGTGTTTATGAGCTATGAAGCTTGTGTATCTGTAGAATTGTAAA  750

seq1  GTATACTAATAAAATCAAATTGGAACTCGCCTTACATTTGACTGTGTTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTAATAAAATCAAATTGGAACTCGCCTTACATTTGACTGTGTTAC  800

seq1  CACCTGGAGTACTTGTATAAGTCGTATAGTGGCTCTATAAAGCAACTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGAGTACTTGTATAAGTCGTATAGTGGCTCTATAAAGCAACTTTA  850

seq1  CAGCTGAAATAGAATTC  866
      |||||||||||||||||
seq2  CAGCTGAAATAGAATTC  867


seq1: chr13_26121132_26122268
seq2: B6Ng01-273C18.g_66_1190

seq1  GAATTCTCTGCTACTTCTCTAGTACTATGTTTGATTGAGTGCTGGCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTACTTCTCTAGTACTATGTTTGATTGAGTGCTGGCATGT  50

seq1  TCCTCGCCATGAGAACAAACCTCTGAACCTATAAGAAAGCACCCAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGCCATGAGAACAAACCTCTGAACCTATAAGAAAGCACCCAATTAA  100

seq1  ACATATTATTTTAATAAGAGTTTCCTACAACAACGTATCTCTTTTTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTATTTTAATAAGAGTTTCCTACAACAACGTATCTCTTTTTAACA  150

seq1  AAAGGATAATCTTTTCAACAAAAGGATAATGACTAAGACAGTTGTGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATAATCTTTTCAACAAAAGGATAATGACTAAGACAGTTGTGCACC  200

seq1  TACTGTCATCCTGATCAAATGATGTCATAGATCTCTTTTTATGCAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCATCCTGATCAAATGATGTCATAGATCTCTTTTTATGCAGATTT  250

seq1  TGAATGTTTTTCTGTAAGTAGCAATGAAAGACCTTTTTCCACAGGACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTTTTCTGTAAGTAGCAATGAAAGACCTTTTTCCACAGGACTAT  300

seq1  TGCCCAGAGCCCTAGAAGTATGACAGCTATTCTAGGCTTACCCTTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGAGCCCTAGAAGTATGACAGCTATTCTAGGCTTACCCTTTTAAT  350

seq1  TGAAACTTCATTTCTAGAGGCTGTAAGATGGAACAATGGGTAGGAACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTCATTTCTAGAGGCTGTAAGATGGAACAATGGGTAGGAACTCT  400

seq1  TGCTACACAAACATCATATGAATTTGAATCCCCAGAACACATGTAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACACAAACATCATATGAATTTGAATCCCCAGAACACATGTAAAATT  450

seq1  CAAGAGTTAGCATGTGCTTGGTGCATGTGGGTACTGGGGCAAGAAGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTAGCATGTGCTTGGTGCATGTGGGTACTGGGGCAAGAAGATTG  500

seq1  CTAGGGCTGGCTGGAAGCAAGCCTTGCTCTAAGTGTGGGGAAAAGGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCTGGCTGGAAGCAAGCCTTGCTCTAAGTGTGGGGAAAAGGCTCT  550

seq1  GTCTCAGAGAAATAAGGCCAAGAGTGGTAAATGAGGACACCGTGTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAGAAATAAGGCCAAGAGTGGTAAATGAGGACACCGTGTGTTCT  600

seq1  CCTCTGACCTCTGCATGTTTCCACATATGTGCTCTCAGATGCATATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACCTCTGCATGTTTCCACATATGTGCTCTCAGATGCATATTCTA  650

seq1  CCCTACACAGGTACAATGCGCATATCACACTCATTTGCAAACAAAGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACACAGGTACAATGCGCATATCACACTCATTTGCAAACAAAGAAGT  700

seq1  TCTTTCGAGACCGGGTCTGTAGACCAGACTGATTTTAAATACAGAAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCGAGACCGGGTCTGTAGACCAGACTGATTTTAAATACAGAAAGAT  750

seq1  CTATCAACACGTGACTCCAGAGTTAGAATTAAAGGTAAGCTCCATACACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAACACGTGACTCCAGAGTTAGAATTAAAGGTAAGCTCCATACACC  800

seq1  TAGCCCTGTTTTAATTTAGACTCTAGAGAATTTGTTTTCTACTCAAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGTTTTAATTTAGACTCTAGAGAATTTGTTTTCTACTCAAATCT  850

seq1  CTTTTGAGGATTGCTAGATAAGTAAAGACAAAGAAAAAAATGTTGAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAGGATTGCTAGATAAGTAAAGACAAAGAAAAAAATGTTGAAAAT  900

seq1  GACATTTCAATAACTGAGAAGTTTAGGGGGTGCTAGGCTTACCCTGATAT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACATTTCAATAACTGAGAAGTTTAGGGGGTGCTAGGCTTA-CCTGATAT  949

seq1  GATAAGAATAGGTGACATATTGGCATAATTGGACAGGAATATTTGACTTG  1000
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAT-AGAATAGGTGACATATTGGCATAATTGGACAGGAATATTTGACTTG  998

seq1  ATTCTCAGGCCGTTACACATGTTGAAATGGGTGTGAACAGTCATCCAGAA  1050
      ||||||| |||| |||||||||||||||||||||| |||||||| |||||
seq2  ATTCTCA-GCCG-TACACATGTTGAAATGGGTGTG-ACAGTCAT-CAGAA  1044

seq1  AAATTTATCTTGGAGGTAAGAAATCAGAATAAAGCAGGCATCATGGGCT-  1099
      ||||||||||  || ||||||||||||||| ||||| ||||||||| || 
seq2  AAATTTATCT--GA-GTAAGAAATCAGAAT-AAGCAAGCATCATGGCCTG  1090

seq1  GCGTGCACCATTCTCTCTCAGTCTCCTGACTTTTATAA  1137
      ||||||||   ||||||||||||| ||||  |||||||
seq2  GCGTGCAC--ATCTCTCTCAGTCT-CTGAACTTTATAA  1125


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