BAC Information

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BAC

Clone NameB6Ng01-274J08
Chromosome14 (Build37)13 (Build37)
Map Location 8,383,280 - 8,384,47415,329,863 - 15,330,461
singlet/doubletsingletsinglet
Overlap geneLOC100041874
Upstream geneLOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272
Downstream geneLOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274J08.bB6Ng01-274J08.g
ACCGA075846GA075847
length1,184951
definitionB6Ng01-274J08.b B6Ng01-274J08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,383,280 - 8,384,474)(15,329,863 - 15,330,461)
sequence
gaattcagtgttcatcctgtggcatggcccaagaagcaaataatatgctg
aattaaggaatcaataatcatgtgcaaacaggctatatcatgtactaccc
aagccaactgcatgccacatcctggctcattcaaactgggtcccctaggt
gctaattaaacttactatcctgggcagaggacagcagagccaggagacca
aatggagctagctgaccttcaagggcttcccgggcaagcatgtaggaata
gagtacttctatgacaattttacactacactgtgccacaggcaagggtcc
agtagatatctgtaatgactttccacttatttttaaggcagggattatca
tttcttggtttctgttgttatgtgaattcccagaggacacaactagtatt
tacaggagaaaggctttatcacatctcctccaggagattcctgtgtgaca
acaaggaaacaccaggagcaaacttccctggtgatcactttggacctcta
tggactcaacactaacaggacctgcaaactgtgcatcacacaaatcctca
gaccccatcaaaggtcccagagccccagtcctgaacaaaacacacgcaac
tatgttcacacacacagacacaattagaatgccaaataaatccagacagg
tgccatctctcagaatataatgaacaatatcagagtaaagccttgaagcc
tgcaggcattgcattcacacactgagagacagtaagtgtgagcaggacat
tctagctgttcacagcaacaatcagaatgcaaaaaccccaaggtcaagta
caaaagaagatgataataaacacacagcaccttgtttatccaacaattaa
acacctgtcaggctacttaattgaatgatgggagatgacgcactccattc
atggaaaggaaattgggttaacagatggcacaatacaggcaacagggtac
tggcataattcctacctgtagttcaatcctcatacatgtaaaggttcaga
ttccacacatttcctccatgtcattgctgatctctcatatccaattcagt
tcttctagtcatttatttttgatctctctagtcatttgatttggggtgag
gtatttctagcagatccttgcagatagttaaacacaaaaagaactgcata
cctgatgcccaacggtcaggggagacccattctg
gaattctttgttcagttctgagccccattttttttttttttttttttttt
ttttttttttttttttaaagattttatttatttacttattatatgtaagt
acactgtagctgtcttcaaacactccaaaagagggcgtcagatctcttta
cggatggttgtgagccaccatgtggttgctgggatttgaacttccgacct
tcggaagagcagtcgggggctcttacccactgagccgtctcaccagcccg
agccccatttttttaatggggttatttgattttctgaagtccaccttctt
gagttctttatggaagtcaatcgtatcaaatattaggatgactactccag
cttgtttcttcataccatttgcttggaaaattgttttccagcctttcatt
ctgaggtagtgtctatctttttctctgaaatgagtttcctgtaagcagca
aaatgttgggtcttgtttgtgtagccagattgttagtctatgtcttttta
ttggggagttgagaccattgatgttaagagacattaaggaaaagtaattg
ttgcttcctgttatttttgttgttaaagttggcattctgtccttgtggct
gtcttcttttagttttgttgaggggttatcttcttgttttttctagggcg
tggttcccatccttgtattgttttttttttctgttattatcctttgaagg
gctggattcgtggagagataatgtgtgaatttggttttgtcgtggaatac
tttggtttctccatcctatggtaattgagagtttggctgggtatagtagc
ctgggctggaatttgtgttctccttagtgtctgtataccatctgtccagg
cctcttctggcttcatagtcttctggtgaaaaatctggtgtattctgata
gctgccctcatatgttactgacccttttcccttactgccttagtatccta
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_8383280_8384474
seq2: B6Ng01-274J08.b_43_1226

seq1  GAATTCAGTGTTCATCCTGTGGCATGGCCCAAGAAGCAAATAATATGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTCATCCTGTGGCATGGCCCAAGAAGCAAATAATATGCTG  50

seq1  AATTAAGGAATCAATAATCATGTGCAAACAGGCTATATCATGTACTACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGAATCAATAATCATGTGCAAACAGGCTATATCATGTACTACCC  100

seq1  AAGCCAACTGCATGCCACATCCTGGCTCATTCAAACTGGGTCCCCTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAACTGCATGCCACATCCTGGCTCATTCAAACTGGGTCCCCTAGGT  150

seq1  GCTAATTAAACTTACTATCCTGGGCAGAGGACAGCAGAGCCAGGAGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTAAACTTACTATCCTGGGCAGAGGACAGCAGAGCCAGGAGACCA  200

seq1  AATGGAGCTAGCTGACCTTCAAGGGCTTCCCGGGCAAGCATGTAGGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGCTAGCTGACCTTCAAGGGCTTCCCGGGCAAGCATGTAGGAATA  250

seq1  GAGTACTTCTATGACAATTTTACACTACACTGTGCCACAGGCAAGGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTCTATGACAATTTTACACTACACTGTGCCACAGGCAAGGGTCC  300

seq1  AGTAGATATCTGTAATGACTTTCCACTTATTTTTAAGGCAGGGATTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATATCTGTAATGACTTTCCACTTATTTTTAAGGCAGGGATTATCA  350

seq1  TTTCTTGGTTTCTGTTGTTATGTGAATTCCCAGAGGACACAACTAGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGTTTCTGTTGTTATGTGAATTCCCAGAGGACACAACTAGTATT  400

seq1  TACAGGAGAAAGGCTTTATCACATCTCCTCCAGGAGATTCCTGTGTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGAAAGGCTTTATCACATCTCCTCCAGGAGATTCCTGTGTGACA  450

seq1  ACAAGGAAACACCAGGAGCAAACTTCCCTGGTGATCACTTTGGACCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAACACCAGGAGCAAACTTCCCTGGTGATCACTTTGGACCTCTA  500

seq1  TGGACTCAACACTAACAGGACCTGCAAACTGTGCATCACACAAATCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCAACACTAACAGGACCTGCAAACTGTGCATCACACAAATCCTCA  550

seq1  GACCCCATCAAAGGTCCCAGAGCCCCAGTCCTGAACAAAACACACGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCATCAAAGGTCCCAGAGCCCCAGTCCTGAACAAAACACACGCAAC  600

seq1  TATGTTCACACACACAGACACAATTAGAATGCCAAATAAATCCAGACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCACACACACAGACACAATTAGAATGCCAAATAAATCCAGACAGG  650

seq1  TGCCATCTCTCAGAATATAATGAACAATATCAGAGTAAAGCCTTGAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTCTCAGAATATAATGAACAATATCAGAGTAAAGCCTTGAAGCC  700

seq1  TGCAGGCATTGCATTCACACACTGAGAGACAGTAAGTGTGAGCAGGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCATTGCATTCACACACTGAGAGACAGTAAGTGTGAGCAGGACAT  750

seq1  TCTAGCTGTTCACAGCAACAATCAGAATGCAAAAACCCCAAGGTCAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGTTCACAGCAACAATCAGAATGCAAAAACCCCAAGGTCAAGTA  800

seq1  CAAAAGAAGATGATAATAAACACACAGCACCTTGTTTATCCAACAATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAGATGATAATAAACACACAGCACCTTGTTTATCCAACAATTAA  850

seq1  ACACCTGTCAGGGCTACTTAATTGAATGATGGGAGATGACGCACTCCATT  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTCA-GGCTACTTAATTGAATGATGGGAGATGACGCACTCCATT  899

seq1  CATGG-AAGGAAATTGGGTTAACAGATGGCACAATACAGGCAACAGGGTA  949
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAGGAAATTGGGTTAACAGATGGCACAATACAGGCAACAGGGTA  949

seq1  CTGGGCATAATTCCTACCTGTAGTTCAAATCCTCATACATGTAAAGGTTC  999
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CT-GGCATAATTCCTACCTGTAGTTC-AATCCTCATACATGTAAAGGTTC  997

seq1  AGGATTCCACACATTTCCTCCATGTCATTGCTGATCTTCCTCATATCCAA  1049
      | |||||||||||||||||||||||||||||||||||  |||||||||||
seq2  A-GATTCCACACATTTCCTCCATGTCATTGCTGATCT--CTCATATCCAA  1044

seq1  TTTCAGTTCTTCTAGTTCATTTATTTTTGATCTCTTCTTAGTCATTTTGG  1099
       |||||||||||||| |||||||||||||||||||   |||||||||  |
seq2  -TTCAGTTCTTCTAG-TCATTTATTTTTGATCTCT--CTAGTCATTT--G  1088

seq1  AATTTTGGGTTGAAGTATTTCTAGCAGA-CCCTGCAGATAGGTAAACACA  1148
      |  |||||| ||| |||||||||||||| || ||||||||| ||||||||
seq2  A--TTTGGGGTGAGGTATTTCTAGCAGATCCTTGCAGATAGTTAAACACA  1136

seq1  AAAGAATTTGCATACTTGATGGCCCAGGGGCAGGGGAGA-CCATTCTG  1195
      |||  |  ||||||| ||||| || | || ||||||||| ||||||||
seq2  AAAAGAACTGCATACCTGATGCCCAACGGTCAGGGGAGACCCATTCTG  1184

seq1: chr13_15329863_15330461
seq2: B6Ng01-274J08.g_416_1014 (reverse)

seq1  ATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGC  50
      |||| ||||| || |||||||||||||| |||| |||||||||| | |||
seq2  ATAGGATACT-AAGGCAGTAAGGGAAAAGGGTC-AGTAACATATGAGGGC  48

seq1  AAGCCTATCAGAATTACACCAGATTTTTCACCAG-AGACTATGAAAGCCA  99
      |   ||||||||| |||||||||||||||||||| |||||||| ||||||
seq2  A--GCTATCAGAA-TACACCAGATTTTTCACCAGAAGACTATG-AAGCCA  94

seq1  GAAGA-GCCTGGACAGATGTTATACAGACACTAA-GAGAACACAAATTCC  147
      ||||| ||||||||||||| |||||||||||||| |||||||||||||||
seq2  GAAGAGGCCTGGACAGATGGTATACAGACACTAAGGAGAACACAAATTCC  144

seq1  AGCCAAGGCTACTATACCCAGCCAAACTCTCAATTACCATA-GATGGAGA  196
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGGATGGAGA  194

seq1  AACCAAAGTATTCCACGACAAAACTAAATTCACCCATTATCTCTCCACGA  246
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  AACCAAAGTATTCCACGACAAAACCAAATTCACACATTATCTCTCCACGA  244

seq1  ATCCAGCCCTTCAAAGGATAATAACAG--AAAAAAACCAATACAAGAATG  294
      |||||||||||||||||||||||||||  ||||||| ||||||||| |||
seq2  ATCCAGCCCTTCAAAGGATAATAACAGAAAAAAAAAACAATACAAGGATG  294

seq1  GGAACAACGCCCTAGAAAAAACAAGAAGGTAATTCCTCAACAAACCTAAA  344
      ||||| |||||||||||||||||||||| |||  |||||||||| |||||
seq2  GGAACCACGCCCTAGAAAAAACAAGAAGATAACCCCTCAACAAAACTAAA  344

seq1  AGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAG  394
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAAGACAGCCACAAGGACAGAATGCCAACTTTAACAACAAAAATAACAG  394

seq1  GAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAAC  444
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAAGCAACAATTACTTTTCCTTAATGTCTCTTAACATCAATGGTCTCAAC  444

seq1  TCCCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCC  494
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCCCAATAAAAAGACATAGACTAACAATCTGGCTACACAAACAAGACCC  494

seq1  AACATTTTGCTGCTTACAGGAGACACATCTCAGAGAAAAAGATAGACACT  544
      ||||||||||||||||||||| || ||| |||||||||||||||||||||
seq2  AACATTTTGCTGCTTACAGGAAACTCATTTCAGAGAAAAAGATAGACACT  544

seq1  ACCTCAGAATAAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAG  594
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAG  594

seq1  AAACA  599
      |||||
seq2  AAACA  599