BAC Information

Click to search

BAC

Clone NameB6Ng01-274O16
Chromosome13 (Build37)
Map Location 28,720,676 - 28,889,704
singlet/doubletdoublet
Overlap genenone
Upstream genePrl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
Downstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274O16.bB6Ng01-274O16.g
ACCGA076092GA076093
length3881,101
definitionB6Ng01-274O16.b B6Ng01-274O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,720,676 - 28,721,069)(28,888,611 - 28,889,704)
sequence
tccctcctcgcatatttctcaaatgtggcatcctctgaggagctactgtt
tccccctccccaactccaatgtaaactgatagccctcataccattaggac
atttcttccccacgtctgttagcacttaactcactcgaagacaattatct
gtttatacatctgcctccctcaccagcaggagggacacaacaagcatctt
tctaactcttggtacgcggtgctaagcaggtttacaacacttgtgtatga
gtgaatggatctggacaatccgaccgtgctccccactccacccccgcccc
ctgcacaccatggctaatcattctgcctcacaaatgtacttctctacttt
gagagttgactacctttttttttgggggggggaggggg

gaattctcagtttataagatgaggttgtgtgaggtcgccaggctggttct
tgcttttcccacagtgacttcagtagcagttggacaccgtttgacatgct
tttcctggtaccaaaagcatgcacgttttggtctgacttcctggggtcac
attctgctctgtatgtagatagtgtggtacacactagtctctgtatttta
atagtaaagtatgtgtaagacctcagtggatgtgagccataatccataat
gcctcaccactgaagaggcacagagaacctaagagttttatttgactcag
attgtagaggtcggtatatcacataaaatagattttatgtattatcctca
aaatgtatcagtaaattatgaacccaaggacaccaggttgtttggggaaa
tatttttttttcctccagaggaacattctagagagtgagaggattaagga
tcctgtagtcaagctcagctccctgtatcctggctactgttccaaagaat
gggttctcagagctgccttggtgcagccttggctcagttggtagagtgtt
cgtctgagtttaatctctacaccatacaaatctagcatggtgaggcttgc
ttgtcatctcaggaacacagaggcaggagacccatatgttccagtttatc
ccaagctgcatagaaagttgtaagtgagcgtgggctacatgagaccctgc
ccccaagtgacttgtatatttttatgtaaattctatagcattaaaaatat
ttatcctcagacagtttttctttgcagagggcctccctccctccaccccc
tctcttttttgttttgctatatagttcagactggcctcaaactcaggatc
ttcttgctgcagcctcccaagtgtcaggattatgggtaggtactaccgta
cctcacagtatttaacattctgttttcagtgtcctatacagagcagctcc
aatgcttgtgaggtgtattcttgtaacgcaagcattcctttattctgggt
cattaggaataaaaatacaataggactgtcataacaggagaagactgcct
tgcatgggtgcacaagaggtggaagccttgagggggttggggggaatggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28720676_28721069
seq2: B6Ng01-274O16.b_47_440

seq1  GAATTCTCCCTCCTCGCATATTTCTCAAATGTGGCATCCTCTGAGGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTCCTCGCATATTTCTCAAATGTGGCATCCTCTGAGGAGCT  50

seq1  ACTGTTTCCCCCTCCCCAACTCCAATGTAAACTGATAGCCCTCATACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCCCCCTCCCCAACTCCAATGTAAACTGATAGCCCTCATACCAT  100

seq1  TAGGACATTTCTTCCCCACGTCTGTTAGCACTTAACTCACTCGAAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACATTTCTTCCCCACGTCTGTTAGCACTTAACTCACTCGAAGACAA  150

seq1  TTATCTGTTTATACATCTGCCTCCCTCACCAGCAGGAGGGACACAACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTTTATACATCTGCCTCCCTCACCAGCAGGAGGGACACAACAAG  200

seq1  CATCTTTCTAACTCTTGGTACGCGGTGCTAAGCAGGTTTACAACACTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTAACTCTTGGTACGCGGTGCTAAGCAGGTTTACAACACTTGT  250

seq1  GTATGAGTGAATGGATCTGGACAATCCGACCGTGCTCCCCACTCCACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTGAATGGATCTGGACAATCCGACCGTGCTCCCCACTCCACCCC  300

seq1  CGCCCCCTGCACACCATGGCTAATCATTCTGCCTCACAAATGTACTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCCTGCACACCATGGCTAATCATTCTGCCTCACAAATGTACTTCTC  350

seq1  TACTTTGAGAGTTGACTACCTTTTTTTTTGGGGGGGGGAGGGGG  394
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGAGAGTTGACTACCTTTTTTTTTGGGGGGGGGAGGGGG  394


seq1: chr13_28888611_28889704
seq2: B6Ng01-274O16.g_64_1164 (reverse)

seq1  CCCCAT--CCCCCA--CCCCTCA--GCTTTCACCTC-TGTGCCACCATGC  43
      ||||||  ||||||  |||||||  |||| |||||| |||||  ||||||
seq2  CCCCATTCCCCCCAACCCCCTCAAGGCTTCCACCTCTTGTGCACCCATGC  50

seq1  AAGGCAGTC-TCTCCTG-TATGACAGTTCCCTATTGTATTTT--ATCCTA  89
      ||||||||| ||||||| |||||||||  |||||||||||||   |||||
seq2  AAGGCAGTCTTCTCCTGTTATGACAGT--CCTATTGTATTTTTATTCCTA  98

seq1  AATGGACCCAGAATAAAGGAATGCTTGCGTTAC-AGAATACAACCTCACA  138
      |   ||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  A--TGACCCAGAATAAAGGAATGCTTGCGTTACAAGAATAC-ACCTCACA  145

seq1  AGCATTGGAGCTGCTCTGTATAGGACACTGAAAACAGAATGTTAAATACT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGGAGCTGCTCTGTATAGGACACTGAAAACAGAATGTTAAATACT  195

seq1  GTGAGGTACGGTAGTACCTACCCATAATCCTGACACTTGGGAGGCTGCAG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTACGGTAGTACCTACCCATAATCCTGACACTTGGGAGGCTGCAG  245

seq1  CAAGAAGATCCTGAGTTTGAGGCCAGTCTGAACTATATAGCAAAACAAAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGATCCTGAGTTTGAGGCCAGTCTGAACTATATAGCAAAACAAAA  295

seq1  AAGAGAGGGGGTGGAGGGAGGGAGGCCCTCTGCAAAGAAAAACTGTCTGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGGGGTGGAGGGAGGGAGGCCCTCTGCAAAGAAAAACTGTCTGA  345

seq1  GGATAAATATTTTTAATGCTATAGAATTTACATAAAAATATACAAGTCAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATATTTTTAATGCTATAGAATTTACATAAAAATATACAAGTCAC  395

seq1  TTGGGGGCAGGGTCTCATGTAGCCCACGCTCACTTACAACTTTCTATGCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCAGGGTCTCATGTAGCCCACGCTCACTTACAACTTTCTATGCA  445

seq1  GCTTGGGATAAACTGGAACATATGGGTCTCCTGCCTCTGTGTTCCTGAGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGATAAACTGGAACATATGGGTCTCCTGCCTCTGTGTTCCTGAGA  495

seq1  TGACAAGCAAGCCTCACCATGCTAGATTTGTATGGTGTAGAGATTAAACT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCAAGCCTCACCATGCTAGATTTGTATGGTGTAGAGATTAAACT  545

seq1  CAGACGAACACTCTACCAACTGAGCCAAGGCTGCACCAAGGCAGCTCTGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGAACACTCTACCAACTGAGCCAAGGCTGCACCAAGGCAGCTCTGA  595

seq1  GAACCCATTCTTTGGAACAGTAGCCAGGATACAGGGAGCTGAGCTTGACT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCATTCTTTGGAACAGTAGCCAGGATACAGGGAGCTGAGCTTGACT  645

seq1  ACAGGATCCTTAATCCTCTCACTCTCTAGAATGTTCCTCTGGAGGAAAAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCCTTAATCCTCTCACTCTCTAGAATGTTCCTCTGGAGGAAAAA  695

seq1  AAAATATTTCCCCAAACAACCTGGTGTCCTTGGGTTCATAATTTACTGAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTCCCCAAACAACCTGGTGTCCTTGGGTTCATAATTTACTGAT  745

seq1  ACATTTTGAGGATAATACATAAAATCTATTTTATGTGATATACCGACCTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGAGGATAATACATAAAATCTATTTTATGTGATATACCGACCTC  795

seq1  TACAATCTGAGTCAAATAAAACTCTTAGGTTCTCTGTGCCTCTTCAGTGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCTGAGTCAAATAAAACTCTTAGGTTCTCTGTGCCTCTTCAGTGG  845

seq1  TGAGGCATTATGGATTATGGCTCACATCCACTGAGGTCTTACACATACTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATTATGGATTATGGCTCACATCCACTGAGGTCTTACACATACTT  895

seq1  TACTATTAAAATACAGAGACTAGTGTGTACCACACTATCTACATACAGAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTAAAATACAGAGACTAGTGTGTACCACACTATCTACATACAGAG  945

seq1  CAGAATGTGACCCCAGGAAGTCAGACCAAAACGTGCATGCTTTTGGTACC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGACCCCAGGAAGTCAGACCAAAACGTGCATGCTTTTGGTACC  995

seq1  AGGAAAAGCATGTCAAACGGTGTCCAACTGCTACTGAAGTCACTGTGGGA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGCATGTCAAACGGTGTCCAACTGCTACTGAAGTCACTGTGGGA  1045

seq1  AAAGCAAGAACCAGCCTGGCGACCTCACACAACCTCATCTTATAAACTGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGAACCAGCCTGGCGACCTCACACAACCTCATCTTATAAACTGA  1095

seq1  GAATTC  1094
      ||||||
seq2  GAATTC  1101


| Home | SequenceCutter | Blast | Download |