BAC Information

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BAC

Clone NameB6Ng01-275J08
Chromosome13 (Build37)
Map Location 115,041,326 - 115,042,508
singlet/doubletsinglet
Overlap genenone
Upstream geneBC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
Downstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275J08.bB6Ng01-275J08.g
ACCGA076585GA076586
length1,1781,141
definitionB6Ng01-275J08.b B6Ng01-275J08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtctgctttggttgtagaaatgtcgcagtgacatgaactcccg
gtttttcaggctttctttcaataatgagttcttagggaagtcctctcctg
aagctgggggcaagtttacccaggtggagttcttttggtctttctttcat
ggagaggtctgtccttccgctgctagatgtctatcatctacaggccagtg
cctcagtgtattcccagaagtcttagcacgaagggtcacctctgcaagct
tccttgttcttgctgacagctcaggcttcaagttactcctctgttcaggt
tgaagacccgacttttttgtttttcactcaactttgtaattaatgcttcc
tgtgtggtttttatggatcacctagatatttgtaattgaagatggtttgc
tatgatctataactgttaaaagcaaactggaaattcttacttacatttaa
cctttcctttgtcttgattagtcagctggtttttaaaaactctacatctc
tgtgaagactttctaggttgtccaaaggaaaacttgtttaacagcttaca
tttcacaaggaccatggataggtagtttaactacaatgcatattctgtgc
actggctagtactgactcatgattttacaaagaaaggaggagattcgtgg
tctcagaggtcactgcgtttatgtctttgtttttaccttattggcaaaac
tctcccactctgagagtatcttactccatgtagttgatcacttaaaaact
aaaatccattgtttggggatgtggctcagttgatagagtgcttatctaac
taatatgcatgattctggggactgaacctcatcagatatggtaacacaat
gcctatcatcccaccattaaggaggtgagctaggaggatcgaaagttcaa
ggccatcctcagctaatggcaaatttaaggccagcctgaaatgagtgaga
acctatctgaaaaacaaaacagacagacaaacaacaaatctctactttgt
ccttactattgtatctatttctgcctttggctcctacatttctaagtgct
aggctaatgacagggacattcttctggagagtcctttctcaccttttact
cttttaaaaattattacattgttatttatcatcggtgcgtcaggaggtta
gggtgggaagacattctctcagagccat
gccctagtgggggggaaggcgggaaggtggtcggctttttgggggggctt
tataaggtccgcggattctcacctgatgattaccgaatggcagagaagca
cctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaa
caaccctgagattccacctcacaccagtcagaatggctaagatcaaaaat
tcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcct
tcattgttggtgggattgcaggcttgtacaaccactctggaaatcagtct
ggcggttcctcagaaaattggacatagtactaccggaggatccagcaata
cctctcctgggcatatatccagatgtcccaactggtaagaaggacacatg
ctccactatgttcatagcagccttatttataatagccagaagctggaaag
aacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatt
tacacaacggagtactactcagctattaaaaagaatgaatttatgaaatt
cctagccaaatggatggacctggagggcatcatcctgagtgaggtaacac
attcacaaaggaactcacacaatatgtactcactgataagtggatattag
cccaaaacctaggatacccaagatataagatacaatttgctaaacacatg
aaactcaagaagaatgaagactgaagtgtggacactatgcccctccttag
aattgggaacaaaacacccatggaaggagttacagagacaaagtttggag
ctgagatgaaaggatggaccatgtagagactgccatatccagggatccac
cccataatcagcttccaaacgctgacatcattgcatacactagcaagatt
ttatcgaaaggacccagatgtagctatctcttgtgagatatgctggggcc
tagcaaacacagaagtggatgctcacagtcagctattggattgatcacag
gctcccaatggaggagctagagaaagtacccaagagctaaagggatctgc
acctatagtgacacattatgaactaacatacccgagctctgactctagct
gcagatgtatcaaaggatgctagtccgcatcactgaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115041326_115042508
seq2: B6Ng01-275J08.b_43_1220

seq1  GAATTCTGTCTGCTTTGGTTGTAGAAATGTCGCAGTGACATGAACTCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGCTTTGGTTGTAGAAATGTCGCAGTGACATGAACTCCCG  50

seq1  GTTTTTCAGGCTTTCTTTCAATAATGAGTTCTTAGGGAAGTCCTCTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAGGCTTTCTTTCAATAATGAGTTCTTAGGGAAGTCCTCTCCTG  100

seq1  AAGCTGGGGGCAAGTTTACCCAGGTGGAGTTCTTTTGGTCTTTCTTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGGGCAAGTTTACCCAGGTGGAGTTCTTTTGGTCTTTCTTTCAT  150

seq1  GGAGAGGTCTGTCCTTCCGCTGCTAGATGTCTATCATCTACAGGCCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTCTGTCCTTCCGCTGCTAGATGTCTATCATCTACAGGCCAGTG  200

seq1  CCTCAGTGTATTCCCAGAAGTCTTAGCACGAAGGGTCACCTCTGCAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGTATTCCCAGAAGTCTTAGCACGAAGGGTCACCTCTGCAAGCT  250

seq1  TCCTTGTTCTTGCTGACAGCTCAGGCTTCAAGTTACTCCTCTGTTCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTTCTTGCTGACAGCTCAGGCTTCAAGTTACTCCTCTGTTCAGGT  300

seq1  TGAAGACCCGACTTTTTTGTTTTTCACTCAACTTTGTAATTAATGCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCCGACTTTTTTGTTTTTCACTCAACTTTGTAATTAATGCTTCC  350

seq1  TGTGTGGTTTTTATGGATCACCTAGATATTTGTAATTGAAGATGGTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTTTTTATGGATCACCTAGATATTTGTAATTGAAGATGGTTTGC  400

seq1  TATGATCTATAACTGTTAAAAGCAAACTGGAAATTCTTACTTACATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCTATAACTGTTAAAAGCAAACTGGAAATTCTTACTTACATTTAA  450

seq1  CCTTTCCTTTGTCTTGATTAGTCAGCTGGTTTTTAAAAACTCTACATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTTGTCTTGATTAGTCAGCTGGTTTTTAAAAACTCTACATCTC  500

seq1  TGTGAAGACTTTCTAGGTTGTCCAAAGGAAAACTTGTTTAACAGCTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGACTTTCTAGGTTGTCCAAAGGAAAACTTGTTTAACAGCTTACA  550

seq1  TTTCACAAGGACCATGGATAGGTAGTTTAACTACAATGCATATTCTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAGGACCATGGATAGGTAGTTTAACTACAATGCATATTCTGTGC  600

seq1  ACTGGCTAGTACTGACTCATGATTTTACAAAGAAAGGAGGAGATTCGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTAGTACTGACTCATGATTTTACAAAGAAAGGAGGAGATTCGTGG  650

seq1  TCTCAGAGGTCACTGCGTTTATGTCTTTGTTTTTACCTTATTGGCAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGGTCACTGCGTTTATGTCTTTGTTTTTACCTTATTGGCAAAAC  700

seq1  TCTCCCACTCTGAGAGTATCTTACTCCATGTAGTTGATCACTTAAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACTCTGAGAGTATCTTACTCCATGTAGTTGATCACTTAAAAACT  750

seq1  AAAATCCATTGTTTGGGGATGTGGCTCAGTTGATAGAGTGCTTATCTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCATTGTTTGGGGATGTGGCTCAGTTGATAGAGTGCTTATCTAAC  800

seq1  TAATATGCATGATTCTGGGGACTGAACCTCATCAGATATGGTAACACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGCATGATTCTGGGGACTGAACCTCATCAGATATGGTAACACAAT  850

seq1  GCCTATCATCCCACCATTAAGGAGGTGAGCTAGGAGGATCGAAAGTTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCATCCCACCATTAAGGAGGTGAGCTAGGAGGATCGAAAGTTCAA  900

seq1  GGCCATCCTCAGCTAATGGCAAATTTAAGGCCAGCCTGAAATGAGTGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCCTCAGCTAATGGCAAATTTAAGGCCAGCCTGAAATGAGTGAGA  950

seq1  ACCTATCTGAAAAACAAAACAGACAGACAAACAACAAAATCTCTACTTTG  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCTATCTGAAAAACAAAACAGACAGACAAACAAC-AAATCTCTACTTTG  999

seq1  TCCTTACTATTGTTAATCTTATTTCTGCCTTTTGGCTCCTACATTTCTAA  1050
      |||||||||||||  ||| |||||||||| |||||||||||||||||| |
seq2  TCCTTACTATTGT--ATC-TATTTCTGCC-TTTGGCTCCTACATTTCT-A  1044

seq1  AGTGCTAGGCTAATGACAGGGGACA-TCTCTGGGAGAGTCCCTTTCTCAC  1099
      |||||||||||||||||| |||||| |||   ||||||| ||||||||||
seq2  AGTGCTAGGCTAATGACA-GGGACATTCTTCTGGAGAGT-CCTTTCTCAC  1092

seq1  CTTTAACTCTTTTAAAAATTATTACATTGTTATTTATTCATCGTGTGCGT  1149
      |||| ||||||||||||||||||||||||||||||| |||||| ||||||
seq2  CTTTTACTCTTTTAAAAATTATTACATTGTTATTTA-TCATCG-GTGCGT  1140

seq1  CAGGAGGTTAGGGTGGGAAG-CATTCTC---AAGCCAT  1183
      |||||||||||||||||||| |||||||    ||||||
seq2  CAGGAGGTTAGGGTGGGAAGACATTCTCTCAGAGCCAT  1178