BAC Information

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BAC

Clone NameB6Ng01-276C15
Chromosome13 (Build37)
Map Location 27,162,564 - 27,163,666
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl
Downstream genePrl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276C15.bB6Ng01-276C15.g
ACCGA077012GA077013
length1,1071,196
definitionB6Ng01-276C15.b B6Ng01-276C15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtatatgtcctcaggatttgattcacataacatagatgccaat
cctttaacacagtcaggtgtaagtggtcaaaataatttccacactaatga
gtcaaactagtctcccatatattcacttgggacttatatgttatggcaga
atatgaaaaccatcatattctgatagaaatacctttcaaaattgcatttt
tctacatttgcatgactccagtaggacaaaaatgtgcaggagaagaacaa
tggagagaattcctattaaacacaacataagtgaacattgcaatgaaatt
ttgacctgcccaggtatgttcgataacagaatcatacataaagagattgc
taattaaatatatttggcatgctatctctgaactaatttacgggttatga
aaatgaagactatagaagaatctaattaccctatcaaaaatggataataa
ggagtgagaaaaataagaccaggcaaataacaatgggaaaaggggttctc
aagagaattaggcaaaaatgattaaaatggattacctgagataaacaaat
ttggaccacattcttctttgccatgtagacaacacacatagttccacata
cccttatgaaaccgaagttcataatctttctgtaactctttatgtgggag
aattttttagaagtaaacatcagtgccatcacataatttttgaagggtct
aaaaatgtatctctgtgatgttttcttttccttgttttcttcattcattc
ccttcattgtcattatattttattaatgagactatcttttgtacaagtca
tttttattagtaataaaggattaatgaaaaatagattatatatgtgaaat
atgaacacatataacttttacagtaaattaaactctacttaacaaagaat
gccaaggaaattagaaccctatacactagagctatggacacacacagacc
taatcaaacacagagatcatcctgagaaacaagatacagtacgtggagga
gcctcttatacatctgatttccccttatgatgtagaaaaggcagaccatt
tgggggaaggctgccccacattaatggaagaaacctaatccaaaatttaa
attaata
gaattctcacctgaggaatactgaatgagaggcacctgaaaaaaattcag
catcattaatcatcagagaaatgcaaatccaaacaaccctgagattccac
ctcacaccagtctgaatggctaagatcaaaaattcaggtgacagcagatg
ctggcaaggatgtggggaaagaggaacactcctccattgttggtgggatt
gcaagcttgtacaaccactctggaaatcagtctggcagttcctcagaaaa
ttgagatcccgcaatacctctcctgggtatatatccagaagatgttgcaa
ctggtaagaaggacacaaactccactattttcatagcagccttatttata
gtagtcagaagctggaaagaacccagatgcccctcaacagaggaatggat
acagaaaacgtggtacatttacacaatggagtactactcagctattaaaa
agaatgaatttatgaaattcctaggcaaatggatggacctggagggcatc
atcctgagtgaggtaacccaatcacaaaggaactcacacaatatgtactc
actgataagtggatattagcccagaaacttaggatacccaaaatataaga
tacaatttgctaaaagcatgaaactcaagaagaacgaagaccaaagtgtg
gacactttgccccttcctagaaatgggaacaaaacacccatggaaggagt
tacagcgacaaagtttggagctgagatgaaaggatggaccatctagatac
tgccatatctggggatccatcccataatcagcctccaaacactgacgcca
ttgcatacactagcaaaattttgctgaaaggaccctgatatagctgtctc
ttgtgaggctattcttgggcctagcaaacacagaagtggatgctcacagt
cagctattggatgcaacacagggcccccaatggagcagctagagaaagta
cccaaggagttaaagggatctgcaccctataggtggaacacatatgaaac
taactagtaccctccgggagctcgtgtctctagctgcatggtgtatcaga
agaatgggctcagtcgcccattatgggaagagagggcccattgctcttgg
ctaactttatattgcctagtaccaggggattgccagcttagagtaggaag
cagtgcgcaatatctcacgaatgtaggcgagtatgcgatgtgtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27162564_27163666
seq2: B6Ng01-276C15.b_46_1152 (reverse)

seq1  TATTAATTTTAAATTTTGATTA-GTTTCTT-CATT-ATGT-GTGCAGCCT  46
      ||||||||| || ||| ||||| ||||||| |||| |||| | |||||||
seq2  TATTAATTTAAATTTTGGATTAGGTTTCTTCCATTAATGTGGGGCAGCCT  50

seq1  T-CCCCAAATGGTCTGCCTTTTCTTACATCATAAGGGAAAATCAGATGTA  95
      | ||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  TCCCCCAAATGGTCTGCCTTTTC-TACATCATAAGGGGAAATCAGATGTA  99

seq1  TAAGAGGCTCCTCCACGTACTGTATCTTGTTTCTCAGGATGATCTCTGTG  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGCTCCTCCACGTACTGTATCTTGTTTCTCAGGATGATCTCTGTG  149

seq1  TTTGATTAGGTCTGTGTGTGTCCATAGCTCTAGTGTATAGGGTTCTAATT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTAGGTCTGTGTGTGTCCATAGCTCTAGTGTATAGGGTTCTAATT  199

seq1  TCCTTGGCATTCTTTGTTAAGTAGAGTTTAATTTACTGTAAAAGTTATAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCATTCTTTGTTAAGTAGAGTTTAATTTACTGTAAAAGTTATAT  249

seq1  GTGTTCATATTTCACATATATAATCTATTTTTCATTAATCCTTTATTACT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATATTTCACATATATAATCTATTTTTCATTAATCCTTTATTACT  299

seq1  AATAAAAATGACTTGTACAAAAGATAGTCTCATTAATAAAATATAATGAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATGACTTGTACAAAAGATAGTCTCATTAATAAAATATAATGAC  349

seq1  AATGAAGGGAATGAATGAAGAAAACAAGGAAAAGAAAACATCACAGAGAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGGAATGAATGAAGAAAACAAGGAAAAGAAAACATCACAGAGAT  399

seq1  ACATTTTTAGACCCTTCAAAAATTATGTGATGGCACTGATGTTTACTTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTAGACCCTTCAAAAATTATGTGATGGCACTGATGTTTACTTCT  449

seq1  AAAAAATTCTCCCACATAAAGAGTTACAGAAAGATTATGAACTTCGGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCTCCCACATAAAGAGTTACAGAAAGATTATGAACTTCGGTTT  499

seq1  CATAAGGGTATGTGGAACTATGTGTGTTGTCTACATGGCAAAGAAGAATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGGTATGTGGAACTATGTGTGTTGTCTACATGGCAAAGAAGAATG  549

seq1  TGGTCCAAATTTGTTTATCTCAGGTAATCCATTTTAATCATTTTTGCCTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAAATTTGTTTATCTCAGGTAATCCATTTTAATCATTTTTGCCTA  599

seq1  ATTCTCTTGAGAACCCCTTTTCCCATTGTTATTTGCCTGGTCTTATTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTGAGAACCCCTTTTCCCATTGTTATTTGCCTGGTCTTATTTTT  649

seq1  CTCACTCCTTATTATCCATTTTTGATAGGGTAATTAGATTCTTCTATAGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCTTATTATCCATTTTTGATAGGGTAATTAGATTCTTCTATAGT  699

seq1  CTTCATTTTCATAACCCGTAAATTAGTTCAGAGATAGCATGCCAAATATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTTCATAACCCGTAAATTAGTTCAGAGATAGCATGCCAAATATA  749

seq1  TTTAATTAGCAATCTCTTTATGTATGATTCTGTTATCGAACATACCTGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAGCAATCTCTTTATGTATGATTCTGTTATCGAACATACCTGGG  799

seq1  CAGGTCAAAATTTCATTGCAATGTTCACTTATGTTGTGTTTAATAGGAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAAAATTTCATTGCAATGTTCACTTATGTTGTGTTTAATAGGAAT  849

seq1  TCTCTCCATTGTTCTTCTCCTGCACATTTTTGTCCTACTGGAGTCATGCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCATTGTTCTTCTCCTGCACATTTTTGTCCTACTGGAGTCATGCA  899

seq1  AATGTAGAAAAATGCAATTTTGAAAGGTATTTCTATCAGAATATGATGGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGAAAAATGCAATTTTGAAAGGTATTTCTATCAGAATATGATGGT  949

seq1  TTTCATATTCTGCCATAACATATAAGTCCCAAGTGAATATATGGGAGACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTCTGCCATAACATATAAGTCCCAAGTGAATATATGGGAGACT  999

seq1  AGTTTGACTCATTAGTGTGGAAATTATTTTGACCACTTACACCTGACTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGACTCATTAGTGTGGAAATTATTTTGACCACTTACACCTGACTGT  1049

seq1  GTTAAAGGATTGGCATCTATGTTATGTGAATCAAATCCTGAGGACATATA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGATTGGCATCTATGTTATGTGAATCAAATCCTGAGGACATATA  1099

seq1  CTGAATTC  1103
      ||||||||
seq2  CTGAATTC  1107