BAC Information

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BAC

Clone NameB6Ng01-277B07
Chromosome13 (Build37)
Map Location 26,205,296 - 26,338,812
singlet/doubletdoublet
Overlap geneLOC666221
Upstream geneDcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277B07.bB6Ng01-277B07.g
ACCGA077694GA077695
length1,1941,049
definitionB6Ng01-277B07.b B6Ng01-277B07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,205,296 - 26,206,487)(26,337,754 - 26,338,812)
sequence
gaattcttgcatgttcatctacatgtgtgccgcagacccttttggtccct
gtctgcatagaatgggtctctggttgcaggtagacaaggagtcagcaaaa
tgaatgacagacagaatcacatgagagattgtgtagaatctgaatgtaat
ttttcaaatcgagatcctactttttatacagaggagcaacaagaaaccag
gtgagatacatctgcctagttacagtgacacaataaaaaaggaatgtata
catcaaaagaaggtggggaccaggcagctgccactaagaagggagccagg
cgtaatgctagtctattgttaagcccaccaccaggggttcttagtaaatg
cctgatttatgctgtttctttgggcctagtgaagaaacctgtctcagggg
ggttccctaactctttcatggtaaatccacctattcactaggccattgtg
aatttccttgtctgggtaagactggctattgtctcaagtaaacactctgc
agaccagccctgagctattccccctacccccagctccatctttgtaatgc
ctaattagtttcaccttctctattggaagtaaatttgaatgttactgaat
aaataactttcttactgaattcctactgaattccaagtttgtcttcaagg
attttctgggacattggaacactggcaaaggcttagctatgtcagaattc
aatctttaaaggcaattgtaataaataatactaaaagagagcacatgcat
ccatacaccagactaacacggggttagggtatgactatatgggttatgag
aatgccgaggttccaggaggttgagtttccttgaaactctttgcctcgtg
agtgcttccaggcctctctgcctgccaagcagaatttcactggagtgtgc
atagtacatttgaggtcatcaaccacattgtgacacatgcgtgttgggag
ctattagacacactattgtcctgatctctgaatgggcctctctgcccccc
ccagagaaaaggtggtcaaaagcgggccactgacacacccactccgagaa
caccgctctggatgtcctgacctcagatgtaacctgaatacaccagttcc
tgctttcccggagtaggtgccaaaagaaaaatttctgctgaccattcctc
ctgctgagaaaggtaccttcctctttttcacagcatttgcccca

gaattccttaagattaacaaaccccaggacatacagaaaataacaggaga
tatggccaacaagaccctgttctgagtcaaggtatttttctgttttaatc
accagcaggactactatagtaacaatatgaaatagctggcaggcatagaa
tacaatggctactgctatgatgaggggatctgaccacaacagagtatagg
gtacagtgctgctttgggtcacatattaccaagaatacatccatgccctt
gatatgaaatacagaataacttaccagtgatgacatctactttaatcaac
tgactcaatgaattttctactctgtagttagttttgtgaagtttcagtgc
tgtcctctttagaagaaaatgacacttaaggaaactacagattgctcatt
cagtaattctttatggtagttttctttaaatctttaagttataagatgac
aagtttattattattattatcattattattaccattcctttcgtttacat
ctcaaataatatcccacttccagattacccctctgccaaccccccatccc
acatctgccctccccctcccttttgcctgtatgagagtgctcccacactc
acccacactctcccacaccaccaccccagcacccagcacccctctactct
agggtatcaagcctcctcaggacaaagggcctcccctcccagacaagttt
cttattaaaacttagtcagtgtcactatttatataaccatcctggcttgg
tggagactgaagagcacatgaacttgataaatcagcttttacagaagaaa
tattatttattctgtccttgcaacttctaaatgggccactgaaaagtgaa
tcaatgaaaaccttggatcgcactgagttttccttcctatcgcatttgct
ccaggcaaacaaattctaagcacaagaaggcaatttaagagcggtcgcca
tcttggtccgggacccgccgacttagaaatagtctgaacaggtgagaggg
tgcgcagagacctgacagcttctggaacagcagagcacagagcgctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26205296_26206487
seq2: B6Ng01-277B07.b_44_1237

seq1  GAATTCTTGCATGTTCATCTACATGTGTGCCGCAGACCCTTTTGGTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCATGTTCATCTACATGTGTGCCGCAGACCCTTTTGGTCCCT  50

seq1  GTCTGCATAGAATGGGTCTCTGGTTGCAGGTAGACAAGGAGTCAGCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATAGAATGGGTCTCTGGTTGCAGGTAGACAAGGAGTCAGCAAAA  100

seq1  TGAATGACAGACAGAATCACATGAGAGATTGTGTAGAATCTGAATGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACAGACAGAATCACATGAGAGATTGTGTAGAATCTGAATGTAAT  150

seq1  TTTTCAAATCGAGATCCTACTTTTTATACAGAGGAGCAACAAGAAACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATCGAGATCCTACTTTTTATACAGAGGAGCAACAAGAAACCAG  200

seq1  GTGAGATACATCTGCCTAGTTACAGTGACACAATAAAAAAGGAATGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATACATCTGCCTAGTTACAGTGACACAATAAAAAAGGAATGTATA  250

seq1  CATCAAAAGAAGGTGGGGACCAGGCAGCTGCCACTAAGAAGGGAGCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAGAAGGTGGGGACCAGGCAGCTGCCACTAAGAAGGGAGCCAGG  300

seq1  CGTAATGCTAGTCTATTGTTAAGCCCACCACCAGGGGTTCTTAGTAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATGCTAGTCTATTGTTAAGCCCACCACCAGGGGTTCTTAGTAAATG  350

seq1  CCTGATTTATGCTGTTTCTTTGGGCCTAGTGAAGAAACCTGTCTCAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTATGCTGTTTCTTTGGGCCTAGTGAAGAAACCTGTCTCAGGGG  400

seq1  GGTTCCCTAACTCTTTCATGGTAAATCCACCTATTCACTAGGCCATTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCTAACTCTTTCATGGTAAATCCACCTATTCACTAGGCCATTGTG  450

seq1  AATTTCCTTGTCTGGGTAAGACTGGCTATTGTCTCAAGTAAACACTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTTGTCTGGGTAAGACTGGCTATTGTCTCAAGTAAACACTCTGC  500

seq1  AGACCAGCCCTGAGCTATTCCCCCTACCCCCAGCTCCATCTTTGTAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCCCTGAGCTATTCCCCCTACCCCCAGCTCCATCTTTGTAATGC  550

seq1  CTAATTAGTTTCACCTTCTCTATTGGAAGTAAATTTGAATGTTACTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAGTTTCACCTTCTCTATTGGAAGTAAATTTGAATGTTACTGAAT  600

seq1  AAATAACTTTCTTACTGAATTCCTACTGAATTCCAAGTTTGTCTTCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTTCTTACTGAATTCCTACTGAATTCCAAGTTTGTCTTCAAGG  650

seq1  ATTTTCTGGGACATTGGAACACTGGCAAAGGCTTAGCTATGTCAGAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGGGACATTGGAACACTGGCAAAGGCTTAGCTATGTCAGAATTC  700

seq1  AATCTTTAAAGGCAATTGTAATAAATAATACTAAAAGAGAGCACATGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAAAGGCAATTGTAATAAATAATACTAAAAGAGAGCACATGCAT  750

seq1  CCATACACCAGACTAACACGGGGTTAGGGTATGACTATATGGGTTATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACCAGACTAACACGGGGTTAGGGTATGACTATATGGGTTATGAG  800

seq1  AATGCCGAGGTTCCAGGAGGTTGAGTTTCCTTGAAACTCTTTGCCTCGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCGAGGTTCCAGGAGGTTGAGTTTCCTTGAAACTCTTTGCCTCGTG  850

seq1  AGTGCTTCCAGGCCTCTCTGCCTGCCAAGCAGAATTTCACTGGAGTGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTCCAGGCCTCTCTGCCTGCCAAGCAGAATTTCACTGGAGTGTGC  900

seq1  ATAGTACATTTGAGGTCATCAACCACATTGTGACACATGCGTGTTGGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACATTTGAGGTCATCAACCACATTGTGACACATGCGTGTTGGGAG  950

seq1  CTATTAAGACAACACTATTGTCCTGATCTCTGAAATGGGCCTCTCTGCCC  1000
      ||||| |||| ||||||||||||||||||||| |||||||||||||||||
seq2  CTATT-AGAC-ACACTATTGTCCTGATCTCTG-AATGGGCCTCTCTGCCC  997

seq1  CCCCCAGAAGAAAAGGTGGTCAAAAGCGGGCCACTGACACA-CCACTCCG  1049
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCCCAG-AGAAAAGGTGGTCAAAAGCGGGCCACTGACACACCCACTCCG  1046

seq1  AGAACAACCGCTCTGGATGTCCTGACCTCAAGATGTACCCTGATACCACC  1099
      ||||| ||||||||||||||||||||||| ||||||| |||||   ||||
seq2  AGAAC-ACCGCTCTGGATGTCCTGACCTC-AGATGTAACCTGAATACACC  1094

seq1  AAGTTCCTGC-TTCCCCGAGTAGTTGCCAAAAGAAAAATTTCTGCTGCCC  1148
       ||||||||| ||||| |||||| |||||||||||||||||||||||  |
seq2  -AGTTCCTGCTTTCCCGGAGTAGGTGCCAAAAGAAAAATTTCTGCTG-AC  1142

seq1  CATCCCTCCTGCTGAGAA--GTA-CTTCCTCTTTTT--CAGC---TGCCC  1190
      ||| ||||||||||||||  ||| ||||||||||||  ||||   |||||
seq2  CATTCCTCCTGCTGAGAAAGGTACCTTCCTCTTTTTCACAGCATTTGCCC  1192

seq1  CA  1192
      ||
seq2  CA  1194


seq1: chr13_26337754_26338812
seq2: B6Ng01-277B07.g_63_1111 (reverse)

seq1  CTCAGCGCCTCTGTGCTTCTGCCTGTTCCAGAAGCTGTCAGGTTCTCTGG  50
      ||||||| |||||||| |||| |||||||||||||||||||| ||||| |
seq2  CTCAGCG-CTCTGTGC-TCTG-CTGTTCCAGAAGCTGTCAGG-TCTCT-G  45

seq1  CGCACCCTCTCACCTGTTCAGACTAATTTCCTAAGTTCGGCGGGTCCCGG  100
      |||||||||||||||||||||||||  || ||||| ||||||||||||||
seq2  CGCACCCTCTCACCTGTTCAGACTA--TTTCTAAG-TCGGCGGGTCCCGG  92

seq1  ACCAAGATGGCGACCGCTCTTAAATTGCCTTTCTTGTGCTTAGAATTTGT  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCAAGATGGCGACCGCTCTTAAATTGCC-TTCTTGTGCTTAGAATTTGT  141

seq1  TTGCCTGGAGCAAATGCGATAGGAAGGAAAACTCAGTGCGATCCAAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGAGCAAATGCGATAGGAAGGAAAACTCAGTGCGATCCAAGGTT  191

seq1  TTCATTGATTCACTTTTCAGTGGCCCATTTAGAAGTTGCAAGGACAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGATTCACTTTTCAGTGGCCCATTTAGAAGTTGCAAGGACAGAAT  241

seq1  AAATAATATTTCTTCTGTAAAAGCTGATTTATCAAGTTCATGTGCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATTTCTTCTGTAAAAGCTGATTTATCAAGTTCATGTGCTCTTC  291

seq1  AGTCTCCACCAAGCCAGGATGGTTATATAAATAGTGACACTGACTAAGTT  350
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTCTCCACCAAGCCAGGATGGTTATATAAATAGTGACACTGACTAAG-T  340

seq1  TTTAATAAGAAACTTGTCTGGGAGGGGAGGCCCTTTGTCCTGAGGAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAGAAACTTGTCTGGGAGGGGAGGCCCTTTGTCCTGAGGAGGCT  390

seq1  TGATACCCTAGAGTAGAGGGGTGCTGGGTGCTGGGGTGGTGGTGTGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCCTAGAGTAGAGGGGTGCTGGGTGCTGGGGTGGTGGTGTGGGAG  440

seq1  AGTGTGGGTGAGTGTGGGAGCACTCTCATACAGGCAAAAGGGAGGGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGTGAGTGTGGGAGCACTCTCATACAGGCAAAAGGGAGGGGGAG  490

seq1  GGCAGATGTGGGATGGGGGGTTGGCAGAGGGGTAATCTGGAAGTGGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGTGGGATGGGGGGTTGGCAGAGGGGTAATCTGGAAGTGGGATA  540

seq1  TTATTTGAGATGTAAACGAAAGGAATGGTAATAATAATGATAATAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAGATGTAAACGAAAGGAATGGTAATAATAATGATAATAATAAT  590

seq1  AATAAACTTGTCATCTTATAACTTAAAGATTTAAAGAAAACTACCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTTGTCATCTTATAACTTAAAGATTTAAAGAAAACTACCATAAA  640

seq1  GAATTACTGAATGAGCAATCTGTAGTTTCCTTAAGTGTCATTTTCTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACTGAATGAGCAATCTGTAGTTTCCTTAAGTGTCATTTTCTTCTA  690

seq1  AAGAGGACAGCACTGAAACTTCACAAAACTAACTACAGAGTAGAAAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACAGCACTGAAACTTCACAAAACTAACTACAGAGTAGAAAATTC  740

seq1  ATTGAGTCAGTTGATTAAAGTAGATGTCATCACTGGTAAGTTATTCTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTCAGTTGATTAAAGTAGATGTCATCACTGGTAAGTTATTCTGTA  790

seq1  TTTCATATCAAGGGCATGGATGTATTCTTGGTAATATGTGACCCAAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATCAAGGGCATGGATGTATTCTTGGTAATATGTGACCCAAAGCA  840

seq1  GCACTGTACCCTATACTCTGTTGTGGTCAGATCCCCTCATCATAGCAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTACCCTATACTCTGTTGTGGTCAGATCCCCTCATCATAGCAGTA  890

seq1  GCCATTGTATTCTATGCCTGCCAGCTATTTCATATTGTTACTATAGTAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGTATTCTATGCCTGCCAGCTATTTCATATTGTTACTATAGTAGT  940

seq1  CCTGCTGGTGATTAAAACAGAAAAATACCTTGACTCAGAACAGGGTCTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGTGATTAAAACAGAAAAATACCTTGACTCAGAACAGGGTCTTG  990

seq1  TTGGCCATATCTCCTGTTATTTTCTGTATGTCCTGGGGTTTGTTAATCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCATATCTCCTGTTATTTTCTGTATGTCCTGGGGTTTGTTAATCTT  1040

seq1  AAGGAATTC  1059
      |||||||||
seq2  AAGGAATTC  1049


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