BAC Information

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BAC

Clone NameB6Ng01-277E07
Chromosome13 (Build37)
Map Location 23,636,662 - 23,637,707
singlet/doubletsinglet
Overlap geneHist1h3f
Upstream geneOTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh
Downstream geneHist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277E07.bB6Ng01-277E07.g
ACCGA077832GA077833
length1,0561,182
definitionB6Ng01-277E07.b B6Ng01-277E07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctccactccttttacagctgcttgccaatgccagtggctgaac
ctgctttctgagacactaattaaaagggcagggctattttcttcctagta
tcaattgcttcctctgatatcagttaagatttacaaactctactatctat
ttttaattattatttccttgttaaactctaaaaaaatggttgaactttct
tgagtctttttatagatttttttttcctttttctttttttaagcaaggat
tttgctatgtaacttgctacaataggttggttagctcagagatctgtctc
ccagatgttgggattataggtgtaaaacaccgcaccctactgaattcttt
aaaaccaggaaatcaacggtagtttaatctttatgttaaaccgtccaata
ctattaaactcggctaggtagcagcactggcttgtaataccatctcagtg
gtatactcaattaaatgataaactgagccaggcacagacctttttaatcc
cagataaggaaaacggaaaccatagacaaggagaatcgtgctttaaaaac
aaaactaaccaaaataaggtaaaaataattgaaatgccaacaatgtaaca
agtttgaatggtgaaacaaagtaaaacgttaactctgttggacttttact
gtgtggattgtaacacaatcccaaactgaagtgcgtacctgtttctggct
taaaatggctaccccaactctagttgaaagcatacaagatgaaatgatat
cctgaaagccttgtttccaaaaacaggcagctcagactgcttcgtcgggt
ggtgctcatcattgtcaagaaaggctataataggaaaccctggaacactc
tacaaacttgtactacagcatctttggtggataatggaggtggctcttaa
aagagccgttttggtttacgtgccagtgtagaaagcgtgcctattaagcc
cgctcgccgcggataacggcgggccagctggattgtccttgggcatgatg
ggtggacacgcttggcgtgggatggcgcaacaaggtttggtgtctctcaa
aacaga
gaattcattggctcaggaaaggactttctaaacaggacactggcagcaca
ggcagttaagatttgtataacggaaccttgagaagctaaaaacctctgta
cagcaaaggacactgtcatttggcaaaatggcaagattatatgatgtgga
tagttctttgcaaagcatacatctagtagaggattaatatctaatatata
taaagttctttaaaaaaaaaaacctgagcatccagagaataatacaattt
aaaatcactacagtactgagcagagagctctcaaaagatgaaatacaaat
ggccaagaaacaaagaaatgctcaacaactttagctaccgggaaatgcaa
attaaaactactttgagatttcattttacctcagtcagaatggccaaaag
caataaagcaaatgacaacatatactggagaggctgtggggaaaggagaa
cactactcagtgttagcgggagtccaaacttgtgcagccactgtggaaat
tagtgtggaggttcctcgggaagctggaaatagatctacctcaaaatcaa
gttaatgctgggcattgtggtgtattcctttaatcccaacacttgacagg
cagacgcaagatgatctctgtgagttcaagggcagtctggtggcctacat
agtgagttacaggatagccaaggctatgcagagagactgtgtctcaaaca
aacaaacatgccaataagatccagccataccactttggggcatgtccaaa
ggactaacccactacagaagtactagctcattcatgttcattgctgcttt
gttcataatattcaaaaattacaaacagcctagatgtctatttgctggtg
ggtgaataatgaaaatgtggtacatttatacagtagaatattattctctt
acagctgttaagagaaattatattctgaaatttgcagctaactggtatac
tagaatctgaaagaaagggacaaaggagatctcccaaggaagagcaatag
gatatagtgtttatggagggacaagagaaaatagaatagaaattgaagat
tcaattagtagttgattgcagagacggttaaggggggcaaccacgaggag
ggtataactaagaaggtaaggccatgacacgatacggctaccatcctact
tatgaacctctcttaaaatattgcactcatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23636662_23637707
seq2: B6Ng01-277E07.b_44_1099 (reverse)

seq1  TCTG-TTTGAG-GACACC-AACCT--GTGCGCCAT-CCACGCCAAGCGTG  44
      |||| |||||| |||||| |||||   |||||||| ||||||||||||||
seq2  TCTGTTTTGAGAGACACCAAACCTTGTTGCGCCATCCCACGCCAAGCGTG  50

seq1  TC--ACCATCATGCCCAAGGAC-ATCCAGCTGGCCCGCCG-TATCCGCGG  90
      ||   ||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TCCACCCATCATGCCCAAGGACAATCCAGCTGGCCCGCCGTTATCCGCGG  100

seq1  CGAGCGGGCTTAATAGGCACGCTTTCTACACTGGCACGTAAACCAAAACG  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCGGGCTTAATAGGCACGCTTTCTACACTGGCACGTAAACCAAAACG  150

seq1  GCTCTTTTAAGAGCCACCTCCATTATCCACCAAAGATGCTGTAGTACAAG  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTAAGAGCCACCTCCATTATCCACCAAAGATGCTGTAGTACAAG  200

seq1  TTTGTAGAGTGTTCCAGGGTTTCCTATTATAGCCTTTCTTGACAATGATG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAGTGTTCCAGGGTTTCCTATTATAGCCTTTCTTGACAATGATG  250

seq1  AGCACCACCCGACGAAGCAGTCTGAGCTGCCTGTTTTTGGAAACAAGGCT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACCCGACGAAGCAGTCTGAGCTGCCTGTTTTTGGAAACAAGGCT  300

seq1  TTCAGGATATCATTTCATCTTGTATGCTTTCAACTAGAGTTGGGGTAGCC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATATCATTTCATCTTGTATGCTTTCAACTAGAGTTGGGGTAGCC  350

seq1  ATTTTAAGCCAGAAACAGGTACGCACTTCAGTTTGGGATTGTGTTACAAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGCCAGAAACAGGTACGCACTTCAGTTTGGGATTGTGTTACAAT  400

seq1  CCACACAGTAAAAGTCCAACAGAGTTAACGTTTTACTTTGTTTCACCATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGTAAAAGTCCAACAGAGTTAACGTTTTACTTTGTTTCACCATT  450

seq1  CAAACTTGTTACATTGTTGGCATTTCAATTATTTTTACCTTATTTTGGTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGTTACATTGTTGGCATTTCAATTATTTTTACCTTATTTTGGTT  500

seq1  AGTTTTGTTTTTAAAGCACGATTCTCCTTGTCTATGGTTTCCGTTTTCCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTTTTTAAAGCACGATTCTCCTTGTCTATGGTTTCCGTTTTCCT  550

seq1  TATCTGGGATTAAAAAGGTCTGTGCCTGGCTCAGTTTATCATTTAATTGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGATTAAAAAGGTCTGTGCCTGGCTCAGTTTATCATTTAATTGA  600

seq1  GTATACCACTGAGATGGTATTACAAGCCAGTGCTGCTACCTAGCCGAGTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCACTGAGATGGTATTACAAGCCAGTGCTGCTACCTAGCCGAGTT  650

seq1  TAATAGTATTGGACGGTTTAACATAAAGATTAAACTACCGTTGATTTCCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTATTGGACGGTTTAACATAAAGATTAAACTACCGTTGATTTCCT  700

seq1  GGTTTTAAAGAATTCAGTAGGGTGCGGTGTTTTACACCTATAATCCCAAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAAAGAATTCAGTAGGGTGCGGTGTTTTACACCTATAATCCCAAC  750

seq1  ATCTGGGAGACAGATCTCTGAGCTAACCAACCTATTGTAGCAAGTTACAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAGACAGATCTCTGAGCTAACCAACCTATTGTAGCAAGTTACAT  800

seq1  AGCAAAATCCTTGCTTAAAAAAAGAAAAAGGAAAAAAAAATCTATAAAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATCCTTGCTTAAAAAAAGAAAAAGGAAAAAAAAATCTATAAAAA  850

seq1  GACTCAAGAAAGTTCAACCATTTTTTTAGAGTTTAACAAGGAAATAATAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGAAAGTTCAACCATTTTTTTAGAGTTTAACAAGGAAATAATAA  900

seq1  TTAAAAATAGATAGTAGAGTTTGTAAATCTTAACTGATATCAGAGGAAGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAGATAGTAGAGTTTGTAAATCTTAACTGATATCAGAGGAAGC  950

seq1  AATTGATACTAGGAAGAAAATAGCCCTGCCCTTTTAATTAGTGTCTCAGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATACTAGGAAGAAAATAGCCCTGCCCTTTTAATTAGTGTCTCAGA  1000

seq1  AAGCAGGTTCAGCCACTGGCATTGGCAAGCAGCTGTAAAAGGAGTGGAGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTTCAGCCACTGGCATTGGCAAGCAGCTGTAAAAGGAGTGGAGG  1050

seq1  GAATTC  1046
      ||||||
seq2  GAATTC  1056