BAC Information

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BAC

Clone NameB6Ng01-278A20
Chromosome13 (Build37)
Map Location 12,477,607 - 12,585,976
singlet/doubletdoublet
Overlap geneHeatr1, LOC546246, Lgals8, LOC100039900, Edaradd
Upstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725
Downstream geneEro1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278A20.bB6Ng01-278A20.g
ACCGA078403GA078404
length1991,165
definitionB6Ng01-278A20.b B6Ng01-278A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,477,607 - 12,477,805)(12,585,455 - 12,585,976)
sequence
acagagatctgtccgcctttgcttccctagtactgggattaagggtgtgt
accaccactgtcaagctacttaaacactttctagtttagtatgcacatga
tatgtacaaagatgcatatctttcacacctgttatgtgtgtttgtgtgta
ttcgagagtgtatgtgtgtgtgtatgagtgtgagtatattgtgtgtatg
gaattcagtccccaggagccacatggtaggagagaatccagacactgtcc
tctgacatccactctcatggcatttgcatacacatggacacagacagaca
gacagaaacacacagagggatagaattaaactttaaaaattaattaaata
aatgaaaatactcaagcctggtaaaatggttaacacctggcatcttagca
cttgggaggtaaaggaaggacaatcagtccaaggccatcctcagctcgtt
caaggctagcctgagctacatgggcccttgtctttaaaaaaacaaaaaac
aaaacaaaacaaaacaaaaaaaacaaagaaaagcaaaggaagagaaaaaa
atagaggctggagagatggctcagtggttaggagcgttgtggtctcttac
agaggtcttgatttgattctcagcacccacatggtgcctcatatccatct
gtaagtccaattaacacagatctaatgacctcttctggcttctgtgagcc
tgcacgtgtggcatatataaaaaacaatgaaatgatctatgtttttaaaa
acccaaaacaacaagaagtgaacaatagaatttctctttccatcttttga
taagcaagataattctgtcctaatccaatggccatcagattttatctcct
gctggtgtctaacttccttagagaacatcagtttactctttctagactac
agttgtgtacccagaccttgaccttgcaatagcctttgcactacccatct
ggtggtctggtcctgcagagttcatggccttacggggaagacgtcctgca
gttaacactctgcagtttttctttctgcccagcgttgcttctctctgcgg
gccccattgctttttgtcactccccgcacctcccttgtttgcccttctga
acttgcccgtagccatagaaaagaagttcttgtcattcccaggccaacag
cccttccggggcctgatgctgatccaagtgatgtcctgggtcagggcatt
tgaataagtttggggacctgcctggtcaatctgagcccacctgtccctat
tttttgattctgagaaaattggatacgtacttggttccgcatgggtgcca
ataacccaagtcccaggtcacatgttcgagcaagggccttttttttcctg
taatgaagccttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12477607_12477805
seq2: B6Ng01-278A20.b_48_246

seq1  ACAGAGATCTGTCCGCCTTTGCTTCCCTAGTACTGGGATTAAGGGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCTGTCCGCCTTTGCTTCCCTAGTACTGGGATTAAGGGTGTGT  50

seq1  ACCACCACTGTCAAGCTACTTAAACACTTTCTAGTTTAGTATGCACATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACTGTCAAGCTACTTAAACACTTTCTAGTTTAGTATGCACATGA  100

seq1  TATGTACAAAGATGCATATCTTTCACACCTGTTATGTGTGTTTGTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACAAAGATGCATATCTTTCACACCTGTTATGTGTGTTTGTGTGTA  150

seq1  TTCGAGAGTGTATGTGTGTGTGTATGAGTGTGAGTATATTGTGTGTATG  199
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGAGTGTATGTGTGTGTGTATGAGTGTGAGTATATTGTGTGTATG  199

seq1: chr13_12585455_12585976
seq2: B6Ng01-278A20.g_725_1233 (reverse)

seq1  GGGAA-GCTTCATTACAGGAAAAAAAAAAAGCACCCCTGCTCTGAAACAG  49
      ||||| |||||||||||||||||||||      ||| |||||   |||| 
seq2  GGGAAGGCTTCATTACAGGAAAAAAAA----GGCCCTTGCTC--GAACA-  43

seq1  TGGGTGACATTGGGGACTGTGGGTTTATTGTGGCACCAATGC-GAACCAA  98
         ||||| |  |||||| |||| ||||  ||||||| |||| |||||||
seq2  --TGTGACCT--GGGACT-TGGG-TTAT--TGGCACCCATGCGGAACCAA  85

seq1  GGTCGGTATTCCATTTTTCTCAGGAATC-AAAAATAGGGACAGTGGGCCT  147
       ||  ||| |||| |||||||| ||||| ||||||||||||||  || ||
seq2  -GTACGTA-TCCAATTTTCTCA-GAATCAAAAAATAGGGACAGGTGGGCT  132

seq1  CAGAATTGACAAGGCAGGTCCCCAAACTTATCAAAATG-CCTGA-CCAGG  195
      ||| |||||| ||||||||||||||||||||  ||||| ||||| |||||
seq2  CAG-ATTGACCAGGCAGGTCCCCAAACTTATTCAAATGCCCTGACCCAGG  181

seq1  ACATTCACCTGGATCAGCATCAGGCCCCGG-AGGGCTGTTGGCCTGGGAA  244
      ||| |||| ||||||||||||||||||||| |||||||||||||||||||
seq2  ACA-TCACTTGGATCAGCATCAGGCCCCGGAAGGGCTGTTGGCCTGGGAA  230

seq1  TGACAAGAACTTC-TTTCTATGGCTACGGGCAAGTTCAGAAGGGCAAACA  293
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGACAAGAACTTCTTTTCTATGGCTACGGGCAAGTTCAGAAGGGCAAACA  280

seq1  AGGGAGGTGCGGGGAGTGACAAAAAGCAATGGGGCCCGCAGAGAGAAGCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTGCGGGGAGTGACAAAAAGCAATGGGGCCCGCAGAGAGAAGCA  330

seq1  ACGCTGGGCAGAAAGAAAAACTGCAGAGTGTTAACTGCAGGACGTCTTCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGGCAGAAAGAAAAACTGCAGAGTGTTAACTGCAGGACGTCTTCC  380

seq1  CCGTAAGGCCATGAACTCTGCAGGACCAGACCACCAGATGGGTAGTGCAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAAGGCCATGAACTCTGCAGGACCAGACCACCAGATGGGTAGTGCAA  430

seq1  AGGCTATTGCAAGGTCAAGGTCTGGGTACACAACTGTAGTCTAGAAAGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATTGCAAGGTCAAGGTCTGGGTACACAACTGTAGTCTAGAAAGAG  480

seq1  TAAACTGATGTTCTCTAAGGAAGTTAGAC  522
      |||||||||||||||||||||||||||||
seq2  TAAACTGATGTTCTCTAAGGAAGTTAGAC  509