BAC Information

Click to search

BAC

Clone NameB6Ng01-278G02
Chromosome13 (Build37)
Map Location 105,739,901 - 105,789,002
singlet/doubletdoublet
Overlap geneRgs7bp
Upstream geneNln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836
Downstream gene4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a, EG668025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278G02.bB6Ng01-278G02.g
ACCGA078641GA078642
length1,1841,018
definitionB6Ng01-278G02.b B6Ng01-278G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,787,842 - 105,789,002)(105,739,901 - 105,740,907)
sequence
gaattcttcccttgttcattttgatttgcctattctcccataacccacac
agtttttcatcagagtcttttcaataaagtttaaaaaatagatatgatgg
cgctgctgaggtatttgaagtactccagaccacttgggtctcctgaagag
actgcaaactaggctgtcttttgttgcctccaccccaagagccatgactg
accacagtagacccaaacccctcccctgcattcaggttactgtcattttc
tttcaccagctaccccttgaggcctctgggaagacactatgcagatccca
tgaactcacttttgtagaccatccagctctgtatggttttcaacagtggc
tttgttaaagatacagatgtcctagcaatatgctaccgctttgaagagtt
tctattctatttgtgatgggcagttttcaagtttgaaattgtcctctttt
ttattgttccatgggtttttgagtccagtggtttgtgtgaatgttgccca
cttccctgccccacgtacaggcttgctggttaacctgccttcctttcttc
tcctctgcctcttttctgtggacctatccctggacatttagcaagccgat
acattctttcttccaaatgtgtttactttgaaactaagtgggatttttgg
aattgcaaagacaagcctgaaatgttgctttggtatcttttatggagtta
gttactctgatgcaggcagagcctcaagcttgtgtctggctgtttctcct
tcaactgtgtgtctgtctgatctccatttctacctcaaagagctgtctac
cctgcaccccacccaaagggcatcagaacacccacactgatgtcttggtg
gagcaaccatagtcaaacgagctcattccctcatctttcaacttcaaagg
tagagaattaaaacaggatgaggtgcaaaggtcagtttaaagtgaagagg
ctgaggaatggcatcaggcttattgtggcagttccctggccccaaggcac
tctaatggggacagccaggttttgttagccattcatgggggtggtgtcct
ccctttagcgcttatttaacagaagcttgctgaagggacagggcatttca
gtttccaaagactttgttttttcatgaaagtagatactctcattcagtga
ataaaacatgtttccattttcttctagactaaga
gaattctttcacttttgatacataaatataggagaaaattccaagagctg
tttctttgcagattttaggttgaactatgtgaaattgctggttttaaaaa
tatagatcaaaacagtcaaatatcagccatttcatagaattcaacctaat
acaacaattgtccatgctctctccatcttccataaagtgaaaggctttaa
aagtatttagtttttaggccagaatattaatgtacaaataagtgcctccc
caaggctgggattaaagccacttgcaggcagctagtctgtccctcttaag
attggacacctgtgcctctggtctgactcggagatctgtcagaacaggga
acaaaagtgcaaagactcctgggaaatttcattgggggtggggggaaggg
tcaaaggaaggacaggaggaaataaaacaggatttgtagcatattacaag
ttcgtgggaaaagagcgcagcagagccatgagcagaacaacacagcgtgt
ggctccctcttttctaaaatacagtattgcttaatgtgtcccgttctcga
gagtccaagcataagacaggacacagaatacacattggaaaagtcatatc
tgcatagtcatctaaaatgagacaagctaagcttaactaaaacatctttt
ttcattaataatgtaaaatgttaaatagttttatgatctgagctaattcc
agcatgccctataagatttaacactatgctgatgtgtggacccatgcttc
agtttcaattcaaacaaaatgtgataatattgaattttacatctgagggt
aattgtttatgctaactacatcatttcttaacccggataacttcatttcc
caaggaagcttaaaaagacaccattggattaaaagaaagttagcctaccc
atatgcatttgtttgaagatagtaggattactgtgtatttacaaaaatgt
attttttcataatatgacttctgttgcataataaattaagatgtttctga
tgttggataccttagcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_105787842_105789002
seq2: B6Ng01-278G02.b_45_1228 (reverse)

seq1  TCTTAGTCTAAGAAGAAAAAGAAACAATGTTT--ATCACTGAATGAAGAA  48
      ||||||||| ||||||||| | ||  ||||||   |||||||||||   |
seq2  TCTTAGTCT-AGAAGAAAATGGAAACATGTTTTATTCACTGAATGA--GA  47

seq1  GTATCTACTTTAAAGAAAAACAAAGGTCTTT-GAAACTG-AATG-CCTGT  95
      ||||||||||| | ||||||  || |||||| ||||||| |||| |||||
seq2  GTATCTACTTTCATGAAAAAACAAAGTCTTTGGAAACTGAAATGCCCTGT  97

seq1  --CTTCAGC-AGC-TCTG-TAAAT-AGCGCT-AAGGGAG----ACACACC  134
        ||||||| ||| |||| ||||| |||||| |||||||     ||| ||
seq2  CCCTTCAGCAAGCTTCTGTTAAATAAGCGCTAAAGGGAGGACACCACCCC  147

seq1  CATG-ATGGCT-ACAAA--CTGGCTGT-CCCATTAGAGTGCTTTGGGGCC  179
      |||| |||||| |||||  |||||||| ||||||||||||| ||||||||
seq2  CATGAATGGCTAACAAAACCTGGCTGTCCCCATTAGAGTGCCTTGGGGCC  197

seq1  AGGG-ACTG-CACAAT-AGCCTGATGCCATTCCTCAGCCTC-TCACTTTA  225
      |||| |||| |||||| |||||||||||||||||||||||| ||||||||
seq2  AGGGAACTGCCACAATAAGCCTGATGCCATTCCTCAGCCTCTTCACTTTA  247

seq1  AACTGACCTTTGCAACTTCAT-CTGTTTTAATTCTCTA-CTTTGAAGTTG  273
      ||||||||||||| || |||| |||||||||||||||| |||||||||||
seq2  AACTGACCTTTGC-ACCTCATCCTGTTTTAATTCTCTACCTTTGAAGTTG  296

seq1  AAAGATGAGGGAATGAGCTCGTTTGACTATGGTTGCTCCACCAAGACATC  323
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAGGGAATGAGCTCGTTTGACTATGGTTGCTCCACCAAGACATC  346

seq1  AGTGTGGGTGTTCTGATGCCCTTTGGGTGGGGTGCAGGGTAGACAGCTCT  373
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGTGTTCTGATGCCCTTTGGGTGGGGTGCAGGGTAGACAGCTCT  396

seq1  TTGAGGTAGAAATGGAGATCAGACAGACACACAGTTGAAGGAGAAACAGC  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTAGAAATGGAGATCAGACAGACACACAGTTGAAGGAGAAACAGC  446

seq1  CAGACACAAGCTTGAGGCTCTGCCTGCATCAGAGTAACTAACTCCATAAA  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAAGCTTGAGGCTCTGCCTGCATCAGAGTAACTAACTCCATAAA  496

seq1  AGATACCAAAGCAACATTTCAGGCTTGTCTTTGCAATTCCAAAAATCCCA  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCAAAGCAACATTTCAGGCTTGTCTTTGCAATTCCAAAAATCCCA  546

seq1  CTTAGTTTCAAAGTAAACACATTTGGAAGAAAGAATGTATCGGCTTGCTA  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTCAAAGTAAACACATTTGGAAGAAAGAATGTATCGGCTTGCTA  596

seq1  AATGTCCAGGGATAGGTCCACAGAAAAGAGGCAGAGGAGAAGAAAGGAAG  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCAGGGATAGGTCCACAGAAAAGAGGCAGAGGAGAAGAAAGGAAG  646

seq1  GCAGGTTAACCAGCAAGCCTGTACGTGGGGCAGGGAAGTGGGCAACATTC  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTAACCAGCAAGCCTGTACGTGGGGCAGGGAAGTGGGCAACATTC  696

seq1  ACACAAACCACTGGACTCAAAAACCCATGGAACAATAAAAAAGAGGACAA  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACCACTGGACTCAAAAACCCATGGAACAATAAAAAAGAGGACAA  746

seq1  TTTCAAACTTGAAAACTGCCCATCACAAATAGAATAGAAACTCTTCAAAG  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACTTGAAAACTGCCCATCACAAATAGAATAGAAACTCTTCAAAG  796

seq1  CGGTAGCATATTGCTAGGACATCTGTATCTTTAACAAAGCCACTGTTGAA  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGCATATTGCTAGGACATCTGTATCTTTAACAAAGCCACTGTTGAA  846

seq1  AACCATACAGAGCTGGATGGTCTACAAAAGTGAGTTCATGGGATCTGCAT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACAGAGCTGGATGGTCTACAAAAGTGAGTTCATGGGATCTGCAT  896

seq1  AGTGTCTTCCCAGAGGCCTCAAGGGGTAGCTGGTGAAAGAAAATGACAGT  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTCCCAGAGGCCTCAAGGGGTAGCTGGTGAAAGAAAATGACAGT  946

seq1  AACCTGAATGCAGGGGAGGGGTTTGGGTCTACTGTGGTCAGTCATGGCTC  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAATGCAGGGGAGGGGTTTGGGTCTACTGTGGTCAGTCATGGCTC  996

seq1  TTGGGGTGGAGGCAACAAAAGACAGCCTAGTTTGCAGTCTCTTCAGGAGA  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGGAGGCAACAAAAGACAGCCTAGTTTGCAGTCTCTTCAGGAGA  1046

seq1  CCCAAGTGGTCTGGAGTACTTCAAATACCTCAGCAGCGCCATCATATCTA  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGGTCTGGAGTACTTCAAATACCTCAGCAGCGCCATCATATCTA  1096

seq1  TTTTTTAAACTTTATTGAAAAGACTCTGATGAAAAACTGTGTGGGTTATG  1123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAACTTTATTGAAAAGACTCTGATGAAAAACTGTGTGGGTTATG  1146

seq1  GGAGAATAGGCAAATCAAAATGAACAAGGGAAGAATTC  1161
      ||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATAGGCAAATCAAAATGAACAAGGGAAGAATTC  1184

seq1: chr13_105739901_105740907
seq2: B6Ng01-278G02.g_63_1080

seq1  GAATTCTTTCACTTTTGATACATAAATATAGGAGAAAATTCCAAGAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACTTTTGATACATAAATATAGGAGAAAATTCCAAGAGCTG  50

seq1  TTTCTTTGCAGATTTTAGGTTGAACTATGTGAAATTGCTGGTTTTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGCAGATTTTAGGTTGAACTATGTGAAATTGCTGGTTTTAAAAA  100

seq1  TATAGATCAAAACAGTCAAATATCAGCCATTTCATAGAATTCAACCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATCAAAACAGTCAAATATCAGCCATTTCATAGAATTCAACCTAAT  150

seq1  ACAACAATTGTCCATGCTCTCTCCATCTTCCATAAAGTGAAAGGCTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATTGTCCATGCTCTCTCCATCTTCCATAAAGTGAAAGGCTTTAA  200

seq1  AAGTATTTAGTTTTTAGGCCAGAATATTAATGTACAAATAAGTGCCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTAGTTTTTAGGCCAGAATATTAATGTACAAATAAGTGCCTCCC  250

seq1  CAAGGCTGGGATTAAAGCCACTTGCAGGCAGCTAGTCTGTCCCTCTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGGATTAAAGCCACTTGCAGGCAGCTAGTCTGTCCCTCTTAAG  300

seq1  ATTGGACACCTGTGCCTCTGGTCTGACTCGGAGATCTGTCAGAACAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACACCTGTGCCTCTGGTCTGACTCGGAGATCTGTCAGAACAGGGA  350

seq1  ACAAAAGTGCAAAGACTCCTGGGAAATTTCATTGGGGGTGGGGGGAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTGCAAAGACTCCTGGGAAATTTCATTGGGGGTGGGGGGAAGGG  400

seq1  TCAAAGGAAGGACAGGAGGAAATAAAACAGGATTTGTAGCATATTACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAAGGACAGGAGGAAATAAAACAGGATTTGTAGCATATTACAAG  450

seq1  TTCGTGGGAAAAGAGCGCAGCAGAGCCATGAGCAGAACAACACAGCGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGGGAAAAGAGCGCAGCAGAGCCATGAGCAGAACAACACAGCGTGT  500

seq1  GGCTCCCTCTTTTCTAAAATACAGTATTGCTTAATGTGTCCCGTTCTCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTCTTTTCTAAAATACAGTATTGCTTAATGTGTCCCGTTCTCGA  550

seq1  GAGTCCAAGCATAAGACAGGACACAGAATACACATTGGAAAAGTCATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAAGCATAAGACAGGACACAGAATACACATTGGAAAAGTCATATC  600

seq1  TGCATAGTCATCTAAAATGAGACAAGCTAAGCTTAACTAAAACATCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGTCATCTAAAATGAGACAAGCTAAGCTTAACTAAAACATCTTTT  650

seq1  TTCATTAATAATGTAAAATGTTAAATAGTTTTATGATCTGAGCTAATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAATAATGTAAAATGTTAAATAGTTTTATGATCTGAGCTAATTCC  700

seq1  AGCATGCCCTATAAGATTTAACACTATGCTGATGTGTGGACCCATGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCCCTATAAGATTTAACACTATGCTGATGTGTGGACCCATGCTTC  750

seq1  AGGTTTCAATTCAAACAAAATGTGATAATATTGAATTTTACATCTGAGGG  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GTTTCAATTCAAACAAAATGTGATAATATTGAATTTTACATCTGAGGG  799

seq1  TAATTGTTTATGCT-ACTACATCATTTCTTAA-CCGGATAACTTCATTTC  848
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  TAATTGTTTATGCTAACTACATCATTTCTTAACCCGGATAACTTCATTTC  849

seq1  CCAA-GAAGCTTAAAAAGACACCATTGGATTAAAAGAAAGTTAG-CTACC  896
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAAGGAAGCTTAAAAAGACACCATTGGATTAAAAGAAAGTTAGCCTACC  899

seq1  CATATGCA-TTGTTTGAAGATAGTAGGATTACTGTGTATTTAC-AAAATG  944
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  CATATGCATTTGTTTGAAGATAGTAGGATTACTGTGTATTTACAAAAATG  949

seq1  TA-TTTTTCAT-ATATGAC-TCTGTTGCATTATAAATTAAGATG-TTCTG  990
      || |||||||| ||||||| |||||||||| ||||||||||||| |||||
seq2  TATTTTTTCATAATATGACTTCTGTTGCATAATAAATTAAGATGTTTCTG  999

seq1  ATGTT-GATA-CTTAGCGA  1007
      ||||| |||| ||||||||
seq2  ATGTTGGATACCTTAGCGA  1018