BAC Information

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BAC

Clone NameB6Ng01-278G23
Chromosome13 (Build37)
Map Location 54,194,413 - 54,195,549
singlet/doubletsinglet
Overlap geneSfxn1
Upstream geneRor2, Sptlc1, LOC100040421, Msx2, EG432760, E130119H09Rik, Drd1a
Downstream geneHrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278G23.bB6Ng01-278G23.g
ACCGA078678GA078679
length1,1921,141
definitionB6Ng01-278G23.b B6Ng01-278G23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccatcttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgatggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattacggttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttaagtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtcactataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcaaattgctccttctaatttgttgaagaatggagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatattgatcccggccaatccatgagcatgggagatccttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttttatcatac
agatcttcacttcctagttagagtcacgccgagatattttatattatttg
tgactattgagatggtgtgtttcctaatttctttcctcagcctgtttatt
ctttgataagaagaaggccattgactggttgagttatttatatcagctac
tccaccgaagcctgttatcagtttaagaggtctctggtggatttcggtca
cttaatatatacatcatcaactgccaatgtgatatttggacttcctcaat
gtatccatgaattccttggtgtgcgaatgtcgcctcggggac
gaattccaaagaaccgacttcctgtcttgggtccccctcaccccccatag
ccatttgtcctccatcaaaaagatgcaaactttcttatgaacggatgcaa
tcccgagccatgatatcagatacatattggcagccagcgtgctctgtgtc
ctcagctggaatcagactcttctgaataatgtccttcctaaaagtgacaa
gattctcagcctctgcgccactgtcaagctgtgcattacgcgtcgtctgt
ctgtggagtctcccgtttaatatgtttggactgtgggtgaccctatataa
ctgcagcgtaggcgtttactgctcactgggtgtggggtgactccaggaaa
gcttacacggagtgattctgctattgaaggcagcctgcaaactttccata
gtgacccaaaatcatgatgaccatgacctgcaggtcaaactagcattgac
tattcttttcttacaaagaagaggacgttgcaagaagggcattgcatctc
ccggagctggggttaaaggatgtgggtgcttgggaggaggtgagttctca
acaagagcagtcttaaccactaggccacatctccaggcctagccttgctt
ttaaaggtcggtatcacttgcctttggcaggaagggacatttgccttatt
taaaatgttctcgattctctgttatttttagacttatttatgccaatgcc
ttaaagataggaccaagtgagctaagaggctgattgggtcaacgtacatc
ctcagtgcagaggatgaaaggcctggtgccttccagatcgagagctcagg
atactgactccatgtctactgtgtggatctgtcggggaggctccctcacc
acttcactacctcagagtctgtatctgcccctcgacctcaagcagagacc
aacagaagaagggcatgtgggatttgtttttagattattctgaaagccat
ggagatttctgatgggcaactgcatatgatgccatcatcggtagtttata
gaataggagtggtggcgttgctactataacttattcaaagagagaactgt
ctaaactttgtcctgaaaaaagaactttagtatctcaaaaaattactgga
gtaggtactgtcaagagagagatcaatgggcattttgttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54194413_54195549
seq2: B6Ng01-278G23.g_67_1207 (reverse)

seq1  AGAACAAAATG-CCATTGTATC-CTCTCTTGACAGTTAACCTACTTCAGT  48
      ||||||||||| |||||| ||| |||||||||||||  ||||||| ||||
seq2  AGAACAAAATGCCCATTG-ATCTCTCTCTTGACAGT--ACCTACTCCAGT  47

seq1  AAATTTTTTTGAGGATACTAAAG-TCTTTTTCTAGAACAAGTTTAAGAAC  97
      ||  |||||||| |||||||||| |||||||  || ||||  || || ||
seq2  AA--TTTTTTGA-GATACTAAAGTTCTTTTTTCAGGACAAAGTTTAG-AC  93

seq1  AGT--TCTCTTTG-ATAGTTTATAGTAAGCAACG-CACAACTCCTA-TCT  142
      |||  |||||||| |||  ||||||| ||||||| ||| ||||||| |||
seq2  AGTTCTCTCTTTGAATAAGTTATAGT-AGCAACGCCACCACTCCTATTCT  142

seq1  ATAAACTACCGAATGATGGCATCATATGCAGTTTGCCCATCAGAAATCTC  192
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  ATAAACTACCG-ATGATGGCATCATATGCAG-TTGCCCATCAGAAATCTC  190

seq1  CATGGCTTTCAG-ATAATCTAAAAACAAAT-CCACATGCCCTTC-TCTGT  239
      |||||||||||| ||||||||||||||||| ||||||||||||| |||||
seq2  CATGGCTTTCAGAATAATCTAAAAACAAATCCCACATGCCCTTCTTCTGT  240

seq1  TGGTCTCTGCTTGAGGTCGAGGGGCAGATACAGACTCTGAGGTAGTGAGG  289
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGTCTCTGCTTGAGGTCGAGGGGCAGATACAGACTCTGAGGTAGTGAAG  290

seq1  TGGTGAGGGAGCCT-CCCGACAGATCCACACAGTAGACATGGAGTCAGTA  338
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGTGAGGGAGCCTCCCCGACAGATCCACACAGTAGACATGGAGTCAGTA  340

seq1  TCCTGAGCTCTCGATCTGGAAGGCACCAGGCC-TTCATCCTCTGCACTGA  387
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCTGAGCTCTCGATCTGGAAGGCACCAGGCCTTTCATCCTCTGCACTGA  390

seq1  GGATGTACGTTGACCCAATCAGCCTCTTAGCTCACTTGGTCCTATC-TTA  436
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGATGTACGTTGACCCAATCAGCCTCTTAGCTCACTTGGTCCTATCTTTA  440

seq1  AGGCATTGGCATAAATAAGTCTAAAAATAACAGAGAATCGAGAACATTTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTGGCATAAATAAGTCTAAAAATAACAGAGAATCGAGAACATTTT  490

seq1  AAATAAGGCAAATGTCCCTTCCTGCCAAAGGCAAGTGATACCGACCTTTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGCAAATGTCCCTTCCTGCCAAAGGCAAGTGATACCGACCTTTA  540

seq1  AAAGCAAGGCTAGGCCTGGAGATGTGGCCTAGTGGTTAAGACTGCTCTTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGGCTAGGCCTGGAGATGTGGCCTAGTGGTTAAGACTGCTCTTG  590

seq1  TTGAGAACTCACCTCCTCCCAAGCACCCACATCCTTTAACCCCAGCTCCG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACTCACCTCCTCCCAAGCACCCACATCCTTTAACCCCAGCTCCG  640

seq1  GGAGATGCAATGCCCTTCTTGCAACGTCCTCTTCTTTGTAAGAAAAGAAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCAATGCCCTTCTTGCAACGTCCTCTTCTTTGTAAGAAAAGAAT  690

seq1  AGTCAATGCTAGTTTGACCTGCAGGTCATGGTCATCATGATTTTGGGTCA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGCTAGTTTGACCTGCAGGTCATGGTCATCATGATTTTGGGTCA  740

seq1  CTATGGAAAGTTTGCAGGCTGCCTTCAATAGCAGAATCACTCCGTGTAAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAAAGTTTGCAGGCTGCCTTCAATAGCAGAATCACTCCGTGTAAG  790

seq1  CTTTCCTGGAGTCACCCCACACCCAGTGAGCAGTAAACGCCTACGCTGCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGAGTCACCCCACACCCAGTGAGCAGTAAACGCCTACGCTGCA  840

seq1  GTTATATAGGGTCACCCACAGTCCAAACATATTAAACGGGAGACTCCACA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATAGGGTCACCCACAGTCCAAACATATTAAACGGGAGACTCCACA  890

seq1  GACAGACGACGCGTAATGCACAGCTTGACAGTGGCGCAGAGGCTGAGAAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACGACGCGTAATGCACAGCTTGACAGTGGCGCAGAGGCTGAGAAT  940

seq1  CTTGTCACTTTTAGGAAGGACATTATTCAGAAGAGTCTGATTCCAGCTGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCACTTTTAGGAAGGACATTATTCAGAAGAGTCTGATTCCAGCTGA  990

seq1  GGACACAGAGCACGCTGGCTGCCAATATGTATCTGATATCATGGCTCGGG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGAGCACGCTGGCTGCCAATATGTATCTGATATCATGGCTCGGG  1040

seq1  ATTGCATCCGTTCATAAGAAAGTTTGCATCTTTTTGATGGAGGACAAATG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATCCGTTCATAAGAAAGTTTGCATCTTTTTGATGGAGGACAAATG  1090

seq1  GCTATGGGGGGTGAGGGGGACCCAAGACAGGAAGTCGGTTCTTTGGAATT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGGGGGTGAGGGGGACCCAAGACAGGAAGTCGGTTCTTTGGAATT  1140

seq1  C  1137
      |
seq2  C  1141