BAC Information

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BAC

Clone NameB6Ng01-279P12
Chromosome13 (Build37)
Map Location 51,088,781 - 51,261,287
singlet/doubletdoublet
Overlap geneSpin1
Upstream geneLOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717
Downstream gene4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279P12.bB6Ng01-279P12.g
ACCGA079815GA079816
length1,1931,061
definitionB6Ng01-279P12.b B6Ng01-279P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,260,090 - 51,261,287)(51,088,781 - 51,089,753)
sequence
gaattcaagaggttgcataagagagagagggtagatatggccaaagtaca
gaatgcacataaaatgaaaaatgtcattttcatttacagccattactgta
ctctttcacagattcacccagaagcttgtctcagagaagaatcctggtac
actgcatacacacacacacgcacacgcacacacacacaccattggtgtcc
cagtcactttccacctagcagctatggtcagaagtcctatttgtcctaat
agtcagacttagctcttctccctcactgatgctgggtcctgaagagtctg
tcaatgccaccttcagattccagttctgttcctctttagcatttatcaaa
ggccacgacaccttggcatccttctagctgcaacacagactatgttcttc
gtggcctggggtgtgtggctcagttagtagaccggtggagtgcttgccta
gtatgcatgaggccctgggttcaacttccagcaccatgcaaactaggtgt
gctggtacaatcctgcattcctagcacatgggaggtagaggagaggatca
gaacttcaagatcatttttggctacattgtgagttcaagaccagcctggg
acacatggactctgttttaaaatcacgaggagtttcattaaaagcgcgtg
cacgcacatgtgtgtgtgttcatgcacacacatgtgtggctgggcatggt
ggtacttagttgcaatcctgaagaggggaagacaggaagattgctaaaag
attgaggctacatagcaagaccttgtttaaaacaaatgataatataggta
taactcctgtctttgaaaacagaaattacaaagtcagacagggagacttt
ggccttaactgaaaatgagaaacagctgctgaagcactgctcagtggtag
agtgcttgcctaacatgcacaatgccctgggctccattcctaaaccacag
aataacgaataaataaacaaataaataatgaatgaatgaggggactgctc
ttctagaggaaacaagttgggttcccacattagaaaacacagtcagcagc
agtcagcagtcagcagtcaggcagaacgaacgacgacggacatatgatag
atgagggctgcaacttctaagacacattgcttcagctgtttatatggcag
caggaacggcctatccagcatcaatgggtcctattgaaggctc
gaattcctcagactctctactggctagttttgtgtgtcaacttgacacaa
gctggagttctgacagaggaaggagtctcccttgaggaaatgcctccatg
aaaaccagctgtcaggcattttctcaatgggggagcgcccattgtgggtg
gtgccatccctaggctggtagtcctgggttctataagaaagcaagatgaa
gccgggcgtggtggcacacgcctttaatcccagcacacaggaggcagagg
caggcggatttctgagttcgaggccaccctggtctacagagtgagttcca
ggacagccaggtctatacagagaaaccctgtctcaaaaaaccaaaaaaag
aaagaaagaaagaaagctgagcaagccagtaagcagcacccctccatgat
ctctgcatcagctcctgcctccaagttcctacactgtgtgagttcctgtc
ctgacttcctttggtgatggacagcaatgtagaagtgtaagccgagtaaa
ccctttcctccccaacttgcttcttggtcatgatgttttgtgcaggaaca
caaactctgactaagacagactccttctaccctcactcccattctaagcc
cctttaaatctgtttaaaatgtttagttattaccgttaataatctgtgtg
tgtgcacatgcatgtgtgcaggcatatgcatatgcatatgcatctgtgta
tgtgccaaaacatacttgtggaaggtcagaagacaactcgctggagacgg
ttccctccctccaccctgttaaaagcaacacatctcttgcttctgctgct
gctgtgtgctctagtaggtccacacaacttccaggtgggtttcttccagc
cttcccttcttccggccttactgcaaaaatgctgtggatgacatttcctc
ccagcctttggtaacttgggacataatttctgtggtggcaggcacttttt
aaccaaagagctgccgtacaagctcccttacatctcaatcctcctgtaaa
ctacggagatttcctaaggaacaaaacatttaggcctcaaaacttccttc
ttctgtagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_51260090_51261287
seq2: B6Ng01-279P12.b_46_1238 (reverse)

seq1  GAGCCTTC-ATAGGACCAATTGATGCTGGATAAGGCCGTTCTCTGCTGC-  48
      |||||||| |||||||| ||||||||||||| ||||||||| ||||||| 
seq2  GAGCCTTCAATAGGACCCATTGATGCTGGAT-AGGCCGTTC-CTGCTGCC  48

seq1  --ATATACAGCTGGAGCCATGTGTC-TAGAAG-TGCAGCCCCTTCATCTA  94
        ||| ||||||| ||| ||||||| |||||| ||||||||  |||||||
seq2  ATATAAACAGCTGAAGCAATGTGTCTTAGAAGTTGCAGCCC--TCATCTA  96

seq1  TCATATGTCTGTCTGTCTGTCTGTCTGCCTGACTGCCTGACTGCCTGACT  144
      ||||||||| ||| |||  ||  |||||||||||| ||||||| ||||||
seq2  TCATATGTCCGTC-GTCGTTCGTTCTGCCTGACTG-CTGACTG-CTGACT  143

seq1  GCCTGCCTGACTGTG-TTTCTAATGTTGGGAACCCAACTTGTGTCCTCTA  193
      | ||| ||||||||| ||||||||| |||||||||||||||| |||||||
seq2  G-CTG-CTGACTGTGTTTTCTAATG-TGGGAACCCAACTTGTTTCCTCTA  190

seq1  GAAGAGCAGTCCCCTCATTCATTCATTATTTATTTGTTTATTTATTCGTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGTCCCCTCATTCATTCATTATTTATTTGTTTATTTATTCGTT  240

seq1  ATTCTTGTGGTTTAGGAATGGAGCCCAGGGCATTGTGCATGTTAGGCAAG  293
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTC-TGTGGTTTAGGAATGGAGCCCAGGGCATTGTGCATGTTAGGCAAG  289

seq1  CACTCTACCACTGAGCAGTGCTTCAGCAGCCTGTTTCTCATTTTCAGTTA  343
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CACTCTACCACTGAGCAGTGCTTCAGCAG-CTGTTTCTCATTTTCAGTTA  338

seq1  AGGCCAAAGTCTCCCTGTCTGACTTTGTAATTTCTGTTTTCAAAGACAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAAGTCTCCCTGTCTGACTTTGTAATTTCTGTTTTCAAAGACAGG  388

seq1  AGTTATACCTATATTATCATTTGTTTTAAACAAGGTCTTGCTATGTAGCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATACCTATATTATCATTTGTTTTAAACAAGGTCTTGCTATGTAGCC  438

seq1  TCAATCTTTTAGCAATCTTCCTGTCTTCCCCTCTTCAGGATTGCAACTAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTTTTAGCAATCTTCCTGTCTTCCCCTCTTCAGGATTGCAACTAA  488

seq1  GTACCACCATGCCCAGCCACACATGTGTGTGCATGAACACACACACATGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACCATGCCCAGCCACACATGTGTGTGCATGAACACACACACATGT  538

seq1  GCGTGCACGCGCTTTTAATGAAACTCCTCGTGATTTTAAAACAGAGTCCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCACGCGCTTTTAATGAAACTCCTCGTGATTTTAAAACAGAGTCCA  588

seq1  TGTGTCCCAGGCTGGTCTTGAACTCACAATGTAGCCAAAAATGATCTTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCAGGCTGGTCTTGAACTCACAATGTAGCCAAAAATGATCTTGA  638

seq1  AGTTCTGATCCTCTCCTCTACCTCCCATGTGCTAGGAATGCAGGATTGTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGATCCTCTCCTCTACCTCCCATGTGCTAGGAATGCAGGATTGTA  688

seq1  CCAGCACACCTAGTTTGCATGGTGCTGGAAGTTGAACCCAGGGCCTCATG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACACCTAGTTTGCATGGTGCTGGAAGTTGAACCCAGGGCCTCATG  738

seq1  CATACTAGGCAAGCACTCCACCGGTCTACTAACTGAGCCACACACCCCAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTAGGCAAGCACTCCACCGGTCTACTAACTGAGCCACACACCCCAG  788

seq1  GCCACGAAGAACATAGTCTGTGTTGCAGCTAGAAGGATGCCAAGGTGTCG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGAAGAACATAGTCTGTGTTGCAGCTAGAAGGATGCCAAGGTGTCG  838

seq1  TGGCCTTTGATAAATGCTAAAGAGGAACAGAACTGGAATCTGAAGGTGGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTGATAAATGCTAAAGAGGAACAGAACTGGAATCTGAAGGTGGC  888

seq1  ATTGACAGACTCTTCAGGACCCAGCATCAGTGAGGGAGAAGAGCTAAGTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGACTCTTCAGGACCCAGCATCAGTGAGGGAGAAGAGCTAAGTC  938

seq1  TGACTATTAGGACAAATAGGACTTCTGACCATAGCTGCTAGGTGGAAAGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATTAGGACAAATAGGACTTCTGACCATAGCTGCTAGGTGGAAAGT  988

seq1  GACTGGGACACCAATGGTGTGTGTGTGTGCGTGTGCGTGTGTGTGTGTAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGACACCAATGGTGTGTGTGTGTGCGTGTGCGTGTGTGTGTGTAT  1038

seq1  GCAGTGTACCAGGATTCTTCTCTGAGACAAGCTTCTGGGTGAATCTGTGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTACCAGGATTCTTCTCTGAGACAAGCTTCTGGGTGAATCTGTGA  1088

seq1  AAGAGTACAGTAATGGCTGTAAATGAAAATGACATTTTTCATTTTATGTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACAGTAATGGCTGTAAATGAAAATGACATTTTTCATTTTATGTG  1138

seq1  CATTCTGTACTTTGGCCATATCTACCCTCTCTCTCTTATGCAACCTCTTG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTACTTTGGCCATATCTACCCTCTCTCTCTTATGCAACCTCTTG  1188

seq1  AATTC  1198
      |||||
seq2  AATTC  1193

seq1: chr13_51088781_51089753
seq2: B6Ng01-279P12.g_135_1127

seq1  GAAGGAGTCTCCCTTGAGGAAATGCCTCCATGAAAACCAGCTGTCAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTCTCCCTTGAGGAAATGCCTCCATGAAAACCAGCTGTCAGGCA  50

seq1  TTTTCTCAATGGGGGAGCGCCCATTGTGGGTGGTGCCATCCCTAGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAATGGGGGAGCGCCCATTGTGGGTGGTGCCATCCCTAGGCTGG  100

seq1  TAGTCCTGGGTTCTATAAGAAAGCAAGATGAAGCCGGGCGTGGTGGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTGGGTTCTATAAGAAAGCAAGATGAAGCCGGGCGTGGTGGCACA  150

seq1  CGCCTTTAATCCCAGCACACAGGAGGCAGAGGCAGGCGGATTTCTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTAATCCCAGCACACAGGAGGCAGAGGCAGGCGGATTTCTGAGTT  200

seq1  CGAGGCCACCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGTCTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCCACCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGTCTATAC  250

seq1  AGAGAAACCCTGTCTCAAAAAACCAAAAAAAGAAAGAAAGAAAGAAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTCAAAAAACCAAAAAAAGAAAGAAAGAAAGAAAGCT  300

seq1  GAGCAAGCCAGTAAGCAGCACCCCTCCATGATCTCTGCATCAGCTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCCAGTAAGCAGCACCCCTCCATGATCTCTGCATCAGCTCCTGC  350

seq1  CTCCAAGTTCCTACACTGTGTGAGTTCCTGTCCTGACTTCCTTTGGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTTCCTACACTGTGTGAGTTCCTGTCCTGACTTCCTTTGGTGAT  400

seq1  GGACAGCAATGTAGAAGTGTAAGCCGAGTAAACCCTTTCCTCCCCAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCAATGTAGAAGTGTAAGCCGAGTAAACCCTTTCCTCCCCAACTT  450

seq1  GCTTCTTGGTCATGATGTTTTGTGCAGGAACACAAACTCTGACTAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGGTCATGATGTTTTGTGCAGGAACACAAACTCTGACTAAGACA  500

seq1  GACTCCTTCTACCCTCACTCCCATTCTAAGCCCCTTTAAATCTGTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTCTACCCTCACTCCCATTCTAAGCCCCTTTAAATCTGTTTAAA  550

seq1  ATGTTTAGTTATTACCGTTAATAATCTGTGTGTGTGCACATGCATGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGTTATTACCGTTAATAATCTGTGTGTGTGCACATGCATGTGTG  600

seq1  CAGGCATATGCATATGCATATGCATCTGTGTATGTGCCAAAACATACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATATGCATATGCATATGCATCTGTGTATGTGCCAAAACATACTTG  650

seq1  TGGAA-GTCAGAAGACAACTCGCTGGAGACGGTTCCCTCCCTCCACCCTG  699
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTCAGAAGACAACTCGCTGGAGACGGTTCCCTCCCTCCACCCTG  700

seq1  TT-AAAGCAACACATCTCTTGCTTCTGCTGCTGCTGTGTGCTCTAGCTGG  748
      || |||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TTAAAAGCAACACATCTCTTGCTTCTGCTGCTGCTGTGTGCTCTAGTAGG  750

seq1  TCCACAC-ACTTCCAGGTGG--TTC-TCCAGCCT--CCATCTCCCGGCCT  792
      ||||||| ||||||||||||  ||| ||||||||  || ||| |||||||
seq2  TCCACACAACTTCCAGGTGGGTTTCTTCCAGCCTTCCCTTCTTCCGGCCT  800

seq1  TACTGCAGAAGTGCTGT-GATGACA-TTCCTCCCAGCCTTT-GTCACTT-  838
      ||||||| || |||||| ||||||| ||||||||||||||| || |||| 
seq2  TACTGCAAAAATGCTGTGGATGACATTTCCTCCCAGCCTTTGGTAACTTG  850

seq1  GGTCATAATTTCTG-CGTGGCAAGCAC-TTTTACCCAAAGAGCTGCCGTA  886
      || |||||||||||  |||||| |||| ||||| ||||||||||||||||
seq2  GGACATAATTTCTGTGGTGGCAGGCACTTTTTAACCAAAGAGCTGCCGTA  900

seq1  CCAGCCCCCTTACTCGCCAAATCTCCTGTAGACTACGGAG--TTCCCAAA  934
      | ||| |||||||    |||  |||||||| |||||||||  |||| || 
seq2  CAAGCTCCCTTACATCTCAATCCTCCTGTAAACTACGGAGATTTCCTAAG  950

seq1  G-ACAAAACA-TTATGCTCCAAAAC-TCCTTC-TCTGTAGAGG  973
      | |||||||| ||| ||  |||||| |||||| ||||||||||
seq2  GAACAAAACATTTAGGCCTCAAAACTTCCTTCTTCTGTAGAGG  993