BAC Information

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BAC

Clone NameB6Ng01-280B02
Chromosome13 (Build37)
Map Location 65,481,104 - 65,482,218
singlet/doubletsinglet
Overlap geneLOC665753
Upstream geneCcrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750
Downstream geneEG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280B02.bB6Ng01-280B02.g
ACCGA079891GA079892
length1,1171,165
definitionB6Ng01-280B02.b B6Ng01-280B02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagcaggtgctgtcatattttgtaccttctttttggtggctgga
cagatgactccgtgtcatggaatctggctccctcttgtggccttcaggtg
taaaagcaggcagtactctgtatacttaataaataaataaatctttaaaa
gaaagaaagaaaattccttatggaagtttcttatagatttgggagtgatg
actggatgagcgatcctgcttccatttctccttccaggcgtcttcaagag
ctgagggtctgctctcagggcggctcagagggagacagatatgctgcatt
tataggattggaagggaagcaaggacaggcgctgtaatgggaagagctca
tcactggtgggcaaccttcccgagatgggaactggaagtagcagcgccac
accagcgctgccagcgcctgccgcaactaggatcatgggggtccaggtgc
agggacagagcactcgtgtacgttcgcgcgtgtggcggggcgggggtctg
tgggacaggcagggaggcggggcagaacggtgagggcggcgaccctgagc
gctcagcaggatcccagcaaaaggcatggccatttggagagcataggggt
catgcggggtcacacccatgtctctgttttccctcaggtctgtcctgcca
gtgccagggctctcccctcaacaccctcccacctctctcttccccctggg
tcttgggtcacacagctgtcttgggggcggggcgagggggcagggctgga
gggtggccagagttcacccaaggtctcgtggatggcatggtgatcccagt
ccctggcagcagtgaccaatagccacctatgtgatcccttacctatactt
ggaccccaactttagacctgaccctgacatcataatgtaaaccccaacct
ttgaccacatcatgacctctatattggccctgtgaccaggatgacaactg
tcctatacccctgacaagaccccgaacactgttccaccacactccaaacc
agcctctgcctgcccactaatgcaattcccaggtctgacccctagccccc
aaccacatgcatcagtgaatccctgttgacattggaaatcggcacccccc
cccaatgttcacatggc
gaattcaatgaaaaggacgacaattgagcaacatgcacaatcttatggaa
cacaaagaaaatgaaagtggtgctaagataaacgttcatagaacaaaatg
cctgcatgaaaaaaaatggagagctctcatactggcaatttaacagcact
cgttaaagtctagaacagaaagaagtgagggagcaatgaaaaaagggagt
agacatcaggaaattatcaaattggggatgaaatcaataaaataaaaaga
gaagactacaaagaattaatgaaacatggagatggcctttgagcctttta
ttagacaagatagaccaaaacattaaaaaatagagaatatccaaattaac
gaaatctaaaatgaaaatggggacaaaataaaagacaatgaagaattcca
gagaaggacaaagacatagttttaaaaagcatgtactgcactgcattgga
aattctaagagatggataatttactcaataggttccacttatcaaattaa
atcaaactaagataagcaacttaaacagacctaaaaacctagaaaaagag
aagtcattacaaatctgccaccaaaaagacctcagggccatgagttttgg
ggtagaatcctagcagactttcaaggagaaggaggatactcctcaaagta
ttcaacaatattgaaagagaagaaactttggccgatttattttgtgaacc
catgttaactcaaatatccagtcaataaagactcagcaacaaaagagaat
tgcagaccaactttccttaaagtgactgacacaaaaacactttataaagc
aaaacaaataaaaaagaagaaaatagaaaaattatcaaaagaacatccac
catgatcaatgaggtatgcttcattaaatagatgcagggaatgtttcaac
ataatgtacttaaagtgaaaaaaaaagtgaccatctcactagatgggtaa
ataattctctgacatctcacatcactttatgataaatctgggagttatag
gataacaagggacatactaaacataatatggtactacagccagcctagag
aaaacataaatcaatggagagacatccagtactcaactatcccaaagtag
gtggttcattttcgaatcatcgaaattactaagttagctgaagtataatc
tgcaggataggaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65481104_65482218
seq2: B6Ng01-280B02.b_47_1163

seq1  GAATTCCAGCAGGTGCTGTCATATTTTGTACCTTCTTTTTGGTGGCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGGTGCTGTCATATTTTGTACCTTCTTTTTGGTGGCTGGA  50

seq1  CAGATGACTCCGTGTCATGGAATCTGGCTCCCTCTTGTGGCCTTCAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGACTCCGTGTCATGGAATCTGGCTCCCTCTTGTGGCCTTCAGGTG  100

seq1  TAAAAGCAGGCAGTACTCTGTATACTTAATAAATAAATAAATCTTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAGGCAGTACTCTGTATACTTAATAAATAAATAAATCTTTAAAA  150

seq1  GAAAGAAAGAAAATTCCTTATGGAAGTTTCTTATAGATTTGGGAGTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAATTCCTTATGGAAGTTTCTTATAGATTTGGGAGTGATG  200

seq1  ACTGGATGAGCGATCCTGCTTCCATTTCTCCTTCCAGGCGTCTTCAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATGAGCGATCCTGCTTCCATTTCTCCTTCCAGGCGTCTTCAAGAG  250

seq1  CTGAGGGTCTGCTCTCAGGGCGGCTCAGAGGGAGACAGATATGCTGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTCTGCTCTCAGGGCGGCTCAGAGGGAGACAGATATGCTGCATT  300

seq1  TATAGGATTGGAAGGGAAGCAAGGACAGGCGCTGTAATGGGAAGAGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATTGGAAGGGAAGCAAGGACAGGCGCTGTAATGGGAAGAGCTCA  350

seq1  TCACTGGTGGGCAACCTTCCCGAGATGGGAACTGGAAGTAGCAGCGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGTGGGCAACCTTCCCGAGATGGGAACTGGAAGTAGCAGCGCCAC  400

seq1  ACCAGCGCTGCCAGCGCCTGCCGCAACTAGGATCATGGGGGTCCAGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCGCTGCCAGCGCCTGCCGCAACTAGGATCATGGGGGTCCAGGTGC  450

seq1  AGGGACAGAGCACTCGTGTACGTTCGCGCGTGTGGCGGGGCGGGGGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGAGCACTCGTGTACGTTCGCGCGTGTGGCGGGGCGGGGGTCTG  500

seq1  TGGGACAGGCAGGGAGGCGGGGCAGAACGGTGAGGGCGGCGACCCTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGGCAGGGAGGCGGGGCAGAACGGTGAGGGCGGCGACCCTGAGC  550

seq1  GCTCAGCAGGATCCCAGCAAAAGGCATGGCCATTTGGAGAGCATAGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGGATCCCAGCAAAAGGCATGGCCATTTGGAGAGCATAGGGGT  600

seq1  CATGCGGGGTCACACCCATGTCTCTGTTTTCCCTCAGGTCTGTCCTGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGGGGTCACACCCATGTCTCTGTTTTCCCTCAGGTCTGTCCTGCCA  650

seq1  GTGCCAGGGCTCTCCCCTCAACACCCTCCCACCTCTCTCTTCCCCCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGGGCTCTCCCCTCAACACCCTCCCACCTCTCTCTTCCCCCTGGG  700

seq1  TCTTGGGTCACACAGCTGTCTTGGGGGCGGGGCGAGGGGGCAGGGCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTCACACAGCTGTCTTGGGGGCGGGGCGAGGGGGCAGGGCTGGA  750

seq1  GGGTGGCCAGAGTTCACCCAAGGTCTCGTGGATGGCATGGTGATCCCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCCAGAGTTCACCCAAGGTCTCGTGGATGGCATGGTGATCCCAGT  800

seq1  CCCTGGCAGCAGTGACCAATAGCCACCTATGTGATCCCTTACCTATACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCAGCAGTGACCAATAGCCACCTATGTGATCCCTTACCTATACTT  850

seq1  GGACCCCAACTTTAGACCTGACCCTGACATCAT-ATGTAAACCCCAACCT  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGACCCCAACTTTAGACCTGACCCTGACATCATAATGTAAACCCCAACCT  900

seq1  TTGACCACATCATGACCTCTATATT-GCCCTGTGACCAGGATGAC-ACTG  947
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  TTGACCACATCATGACCTCTATATTGGCCCTGTGACCAGGATGACAACTG  950

seq1  TCCTATAACCCTGACAAGACCCCG-ACACTG-TCCACCACACTCCAAACC  995
      ||||||| |||||||||||||||| |||||| ||||||||||||||||||
seq2  TCCTATACCCCTGACAAGACCCCGAACACTGTTCCACCACACTCCAAACC  1000

seq1  AGCCTCTGCCCTGCCCACT-ATGCACT--CCAGGTTCTGACCCCTAGCCC  1042
      |||||||| |||||||||| ||||| |  ||||| |||||||||||||||
seq2  AGCCTCTG-CCTGCCCACTAATGCAATTCCCAGG-TCTGACCCCTAGCCC  1048

seq1  CC-ACCACATGCATCAGTGATTCCCTGGTGACGTTGGAATTCCGCACTTC  1091
      || ||||||||||||||||| |||||| |||| |||||| || |||    
seq2  CCAACCACATGCATCAGTGAATCCCTGTTGACATTGGAAATCGGCA----  1094

seq1  TGCCCCCCCCCCATG-TCACATGGC  1115
        ||||||||| ||| |||||||||
seq2  --CCCCCCCCCAATGTTCACATGGC  1117