BAC Information

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BAC

Clone NameB6Ng01-280M02
Chromosome13 (Build37)
Map Location 32,260,110 - 32,461,462
singlet/doubletdoublet
Overlap geneGmds
Upstream geneLOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280M02.bB6Ng01-280M02.g
ACCGA080403GA080404
length1,1981,093
definitionB6Ng01-280M02.b B6Ng01-280M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,260,110 - 32,261,308)(32,460,347 - 32,461,462)
sequence
gaattcttaacatcacagtaggcaatttatatttgactaaggatggacaa
taacaaaatatactggtctctgaacacagaaattaaaaagtgaggattct
ctagaaacaaaagtaaggggacaggaaagaaaggagagtgcatggcaggc
actggaaaatagtgtatgaggctactgactatgcttcatatatttacaaa
taaagttttctcattaaagacagacttaaaatgaaaagtacaaagttcag
aaattgagaaatagagacgtgtagaaaattaaaattctgttgcagcaatc
acatggctttctctcacaaagggcacataaaactatcactaggatccttt
tctacatgtgtatcccaccaaaagcctaatatctgtgattctctgttcac
aggttataaaaagcttcaaatcactacagaaatacaaatttctagaaaag
agcatgcttaaaggcagttattataaatggtctaatcaaaaaagtctaac
ttataagaaaccatcttaagtagttcaatacattttggtcttgattttta
attttagaaacttttttattggcctgcttgcatccaggccaatagtctgt
ctgtttagaacaattactgaagaatagcttgcttagcatcctgatgtgga
tacaggacacccttcaagaggaaaagatcacttaattgaagttaaacatg
tttcaggtttctgagtggagaaaaggtaaacatagttttatatcccaaat
catttacccctatgattatctcaactaccagaacaccaaaatcaatttca
ctgtactttcatttatgctttataatgggaaaaaaatgacacatttccaa
atttaattaaccaaaacaaaaattcctaggataccccatgcaattctgag
tggactaaacaatacatcttagccactcaggacaaaaggtcatttgggaa
gggatgtgccctttagagcttacaaaggcttcgtcctccagcactgtatg
aaaaggaagcatatcctcagtggagagatgccccactttaataaggaatg
ggtctgcagatgcacacacactgctttcttgttcatgaataagccacagt
ccaacagcccaagtcccagaaccgcctggagctttcatgcgagacccacg
aagccacgccttaagtaccaggacaagcaatgtgttcacctcactgtt
gaattccaagacccaaggatggcaagtttcatgccaactgactacatagt
gagaccagaggagcatggggagatctttgtgtttagcagtgtttgttttt
cctgtgtgaagggctctcgccctccttagttacatccagggtcacatcag
tttggcatgtccaaagaccagagactggaaggtctcaggcattcaggaag
aacactgaggtgaactgtgggagaatggggtttactaaaagagttattaa
cacaatcactgtgcttcagccagacccttcctggagtcagtcactccatt
tcatttaatgaatgctttttccttgtttggatttttatgtaatctccttt
tacaacaggcttttaatttacataatttagaccccaaactaccaaaaatt
ggttttactatcctgaaattaggcagactaaatactaaagaagaacaaag
gaagtcagattaaaaactgtgggagggacaatgtagatcagattcctgga
gagtcatgggccatgacaagtgacatagagatgccatgatgaaaggctgg
agtggagcttagcatgtgtaaagccctgtgtttgagctcaagaaccatga
ataaataacaagcaagcaacaaataattataggattcttatagtttggtg
aatgagagctctaggagacatatctgatctgaaatgtctatacatttctg
tatcaaaataattagaagtgaatatatccatatcttagagactctgctta
gaccctaatcagtacctcatgtcctatggggagggccttctcacagtgtg
aaatagtatgatccacagagacagtcaactggagcaagagaaaattaatg
gtaataatgccaaccaaagcccaaattatttatgggaatatggctgacat
gataaaatataagatgaaacagatattcattttgatgttagataatgaat
acaaatacatttgaaaatgccacagatatacacataaatgtttcttttta
aaatcacgactggctttgatttcacctccacctctgtacatgtctaataa
ctgcagtattccatctgaagttattttatctacctgcttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_32260110_32261308
seq2: B6Ng01-280M02.b_44_1241

seq1  GAATTCTTAACATCACAGTAGGCAATTTATATTTGACTAAGGATGGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACATCACAGTAGGCAATTTATATTTGACTAAGGATGGACAA  50

seq1  TAACAAAATATACTGGTCTCTGAACACAGAAATTAAAAAGTGAGGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAATATACTGGTCTCTGAACACAGAAATTAAAAAGTGAGGATTCT  100

seq1  CTAGAAACAAAAGTAAGGGGACAGGAAAGAAAGGAGAGTGCATGGCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAACAAAAGTAAGGGGACAGGAAAGAAAGGAGAGTGCATGGCAGGC  150

seq1  ACTGGAAAATAGTGTATGAGGCTACTGACTATGCTTCATATATTTACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAATAGTGTATGAGGCTACTGACTATGCTTCATATATTTACAAA  200

seq1  TAAAGTTTTCTCATTAAAGACAGACTTAAAATGAAAAGTACAAAGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTTCTCATTAAAGACAGACTTAAAATGAAAAGTACAAAGTTCAG  250

seq1  AAATTGAGAAATAGAGACGTGTAGAAAATTAAAATTCTGTTGCAGCAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGAAATAGAGACGTGTAGAAAATTAAAATTCTGTTGCAGCAATC  300

seq1  ACATGGCTTTCTCTCACAAAGGGCACATAAAACTATCACTAGGATCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTTTCTCTCACAAAGGGCACATAAAACTATCACTAGGATCCTTT  350

seq1  TCTACATGTGTATCCCACCAAAAGCCTAATATCTGTGATTCTCTGTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGTGTATCCCACCAAAAGCCTAATATCTGTGATTCTCTGTTCAC  400

seq1  AGGTTATAAAAAGCTTCAAATCACTACAGAAATACAAATTTCTAGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATAAAAAGCTTCAAATCACTACAGAAATACAAATTTCTAGAAAAG  450

seq1  AGCATGCTTAAAGGCAGTTATTATAAATGGTCTAATCAAAAAAGTCTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTTAAAGGCAGTTATTATAAATGGTCTAATCAAAAAAGTCTAAC  500

seq1  TTATAAGAAACCATCTTAAGTAGTTCAATACATTTTGGTCTTGATTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAAACCATCTTAAGTAGTTCAATACATTTTGGTCTTGATTTTTA  550

seq1  ATTTTAGAAACTTTTTTATTGGCCTGCTTGCATCCAGGCCAATAGTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAAACTTTTTTATTGGCCTGCTTGCATCCAGGCCAATAGTCTGT  600

seq1  CTGTTTAGAACAATTACTGAAGAATAGCTTGCTTAGCATCCTGATGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGAACAATTACTGAAGAATAGCTTGCTTAGCATCCTGATGTGGA  650

seq1  TACAGGACACCCTTCAAGAGGAAAAGATCACTTAATTGAAGTTAAACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGACACCCTTCAAGAGGAAAAGATCACTTAATTGAAGTTAAACATG  700

seq1  TTTCAGGTTTCTGAGTGGAGAAAAGGTAAACATAGTTTTATATCCCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTTTCTGAGTGGAGAAAAGGTAAACATAGTTTTATATCCCAAAT  750

seq1  CATTTACCCCTATGATTATCTCAACTACCAGAACACCAAAATCAATTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCCCTATGATTATCTCAACTACCAGAACACCAAAATCAATTTCA  800

seq1  CTGTACTTTCATTTATGCTTTATAATGGGAAAAAAATGACACATTTCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTTCATTTATGCTTTATAATGGGAAAAAAATGACACATTTCCAA  850

seq1  ATTTAATTAACCAAAACAAAAATTCCTAGGATACCCCATGCAATTCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTAACCAAAACAAAAATTCCTAGGATACCCCATGCAATTCTGAG  900

seq1  TGGACTAAACAATACATCTTAGCCACTCAGGACAAAAGGTCATTT-GGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGACTAAACAATACATCTTAGCCACTCAGGACAAAAGGTCATTTGGGAA  950

seq1  GGGATGTGCCTTTAAGAGCTTACAAAGGCTTCGT-CTCCAGCACTGTAAT  998
      |||||||||| || |||||||||||||||||||| |||||||||||| ||
seq2  GGGATGTGCCCTTTAGAGCTTACAAAGGCTTCGTCCTCCAGCACTGT-AT  999

seq1  GAAAAAGGAAGCATAT-CTCAGTGGAGGAAGGATG-CCCACTTTAAATAA  1046
      | |||||||||||||| ||||||||||    |||| |||||||| |||||
seq2  G-AAAAGGAAGCATATCCTCAGTGGAG---AGATGCCCCACTTT-AATAA  1044

seq1  GGAAATGGGTCTGCAGGATGCACACACACTGCTTTC-TGTCAATG-ATAA  1094
      || |||||||||||| |||||||||||||||||||| |||  ||| ||||
seq2  GG-AATGGGTCTGCA-GATGCACACACACTGCTTTCTTGTTCATGAATAA  1092

seq1  G-CACAGTCCACAAGCCC-AGCCCCAGA--CGGCTTGAGCTTTCATGCGG  1140
      | |||||||||  ||||| || ||||||  || || ||||||||||||| 
seq2  GCCACAGTCCAACAGCCCAAGTCCCAGAACCGCCTGGAGCTTTCATGCG-  1141

seq1  AAGACCCACAGAG-CACGCCTAAAGTAAACAAAGGACAAGCAATGTGTCC  1189
       ||||||||  || ||||||| |||||     |||||||||||||||| |
seq2  -AGACCCACGAAGCCACGCCTTAAGTA---CCAGGACAAGCAATGTGTTC  1187

seq1  A-CTCACTGTT  1199
      | |||||||||
seq2  ACCTCACTGTT  1198

seq1: chr13_32460347_32461462
seq2: B6Ng01-280M02.g_68_1160 (reverse)

seq1  AAGGAAGCCAAGTAAGATAAAATAAAATTTCAAGATGGAATACTGCCAGG  50
      ||||||||  ||  |||||||||  || ||| ||||||||||||||   |
seq2  AAGGAAGC--AGGTAGATAAAAT--AACTTC-AGATGGAATACTGC--AG  43

seq1  TTATTAGGACATGGTTACCAGAGGTGGAGGTGAAATCAAAGCCAAGTCGT  100
      |||||| ||||||  || ||||||||||||||||||||||||| ||||||
seq2  TTATTA-GACATG--TA-CAGAGGTGGAGGTGAAATCAAAGCC-AGTCGT  88

seq1  GATTTTTAAAAAGAAACATTTATGTGTATATCTTGTGGCAATTTTCAAAA  150
      || ||||||||||||||||||||||||||||| |||||| ||||||  ||
seq2  GA-TTTTAAAAAGAAACATTTATGTGTATATC-TGTGGC-ATTTTC--AA  133

seq1  ATGTATTTGTATTCATTATCTAAACATCAAAAATGAAATTATCTTGTTTC  200
      ||||||||||||||||||||| |||||| ||||||||  |||| ||||||
seq2  ATGTATTTGTATTCATTATCT-AACATC-AAAATGAA--TATC-TGTTTC  178

seq1  ATCTTATATTTTTATCATGTCAGCCATATTCCCATAAATAATTTGGGCTT  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATA-TTTTATCATGTCAGCCATATTCCCATAAATAATTTGGGCTT  227

seq1  TGGTTGGCATTATTACCATTAATTTTCTCTTGCTCCAGTTGACTGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGCATTATTACCATTAATTTTCTCTTGCTCCAGTTGACTGTCTCT  277

seq1  GTGGATCATACTATTTCACACTGTGAGAAGGCCCTCCCCATAGGACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCATACTATTTCACACTGTGAGAAGGCCCTCCCCATAGGACATGA  327

seq1  GGTACTGATTAGGGTCTAAGCAGAGTCTCTAAGATATGGATATATTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGATTAGGGTCTAAGCAGAGTCTCTAAGATATGGATATATTCACT  377

seq1  TCTAATTATTTTGATACAGAAATGTATAGACATTTCAGATCAGATATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTATTTTGATACAGAAATGTATAGACATTTCAGATCAGATATGTC  427

seq1  TCCTAGAGCTCTCATTCACCAAACTATAAGAATCCTATAATTATTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGCTCTCATTCACCAAACTATAAGAATCCTATAATTATTTGTTG  477

seq1  CTTGCTTGTTATTTATTCATGGTTCTTGAGCTCAAACACAGGGCTTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGTTATTTATTCATGGTTCTTGAGCTCAAACACAGGGCTTTACA  527

seq1  CATGCTAAGCTCCACTCCAGCCTTTCATCATGGCATCTCTATGTCACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAAGCTCCACTCCAGCCTTTCATCATGGCATCTCTATGTCACTTG  577

seq1  TCATGGCCCATGACTCTCCAGGAATCTGATCTACATTGTCCCTCCCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCCATGACTCTCCAGGAATCTGATCTACATTGTCCCTCCCACAG  627

seq1  TTTTTAATCTGACTTCCTTTGTTCTTCTTTAGTATTTAGTCTGCCTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATCTGACTTCCTTTGTTCTTCTTTAGTATTTAGTCTGCCTAATT  677

seq1  TCAGGATAGTAAAACCAATTTTTGGTAGTTTGGGGTCTAAATTATGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAGTAAAACCAATTTTTGGTAGTTTGGGGTCTAAATTATGTAAA  727

seq1  TTAAAAGCCTGTTGTAAAAGGAGATTACATAAAAATCCAAACAAGGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCCTGTTGTAAAAGGAGATTACATAAAAATCCAAACAAGGAAAA  777

seq1  AGCATTCATTAAATGAAATGGAGTGACTGACTCCAGGAAGGGTCTGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCATTAAATGAAATGGAGTGACTGACTCCAGGAAGGGTCTGGCTG  827

seq1  AAGCACAGTGATTGTGTTAATAACTCTTTTAGTAAACCCCATTCTCCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGTGATTGTGTTAATAACTCTTTTAGTAAACCCCATTCTCCCAC  877

seq1  AGTTCACCTCAGTGTTCTTCCTGAATGCCTGAGACCTTCCAGTCTCTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACCTCAGTGTTCTTCCTGAATGCCTGAGACCTTCCAGTCTCTGGT  927

seq1  CTTTGGACATGCCAAACTGATGTGACCCTGGATGTAACTAAGGAGGGCGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGACATGCCAAACTGATGTGACCCTGGATGTAACTAAGGAGGGCGA  977

seq1  GAGCCCTTCACACAGGAAAAACAAACACTGCTAAACACAAAGATCTCCCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTCACACAGGAAAAACAAACACTGCTAAACACAAAGATCTCCCC  1027

seq1  ATGCTCCTCTGGTCTCACTATGTAGTCAGTTGGCATGAAACTTGCCATCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTCTGGTCTCACTATGTAGTCAGTTGGCATGAAACTTGCCATCC  1077

seq1  TTGGGTCTTGGAATTC  1116
      ||||||||||||||||
seq2  TTGGGTCTTGGAATTC  1093