BAC Information

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BAC

Clone NameB6Ng01-281A24
Chromosome13 (Build37)
Map Location 24,872,403 - 24,991,102
singlet/doubletdoublet
Overlap geneBC005537, Them2, Ttrap, D130043K22Rik
Upstream geneTrim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800
Downstream geneAldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281A24.bB6Ng01-281A24.g
ACCGA080635GA080636
length897402
definitionB6Ng01-281A24.b B6Ng01-281A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,990,210 - 24,991,102)(24,872,403 - 24,872,810)
sequence
gaattctgggggattgaagcaaagaagaggattaagatatgatccctact
gggcagtggtggcgcatgcctttaatcccagcacttgggaggcagaggca
ggcagatttctgagttcaaggctaacctggtctacagagtgagttccagg
atagccaggcctacactgagaaaccctgtctcgaaaaacaaaacaaaaca
acaacaaaaaagatcctgaatatcaaccaacttatagggtctaataggaa
actctaaagattactgggggtgcaggaccacagcattcatgtggaggtca
gaggataacagtaggagttatctccaaacaccaccaagcacagaatttat
gttgtcaggcttggagacaaacacctttacccactgagccatctcaccaa
cactaatgtttagaattgtttgaaaacaacttatagtttctagctaagga
gttaaaacatagatctatgccaggactcaaaaatatctaagaaataagaa
gtaaacctcttacatgaatcaagaggatacgaacatcccctggtatctgg
gattggttctgtgatggtctaaataggatggatttgaacacagagggatg
ttgaggtaggaagacagaaggagggcatagaacatttagaagcatccgga
agaatttacaggaaaaaaaaccccagatagtgtggaatgacaagtgggaa
acaaggctggagctcacagagataagacaggaacgccactttgagggttt
aaataaaaatggccactgtagatccacagagcggcactattaggaggtgt
ggccttgttggaggaggtgtttggaggatgcactcactgggggaaggctt
ttgaggtagaatctcttagctccttctccagcaccacatctggcctg
caaccccacctcccaaaactacatctgacttggatatttactgccagtct
aaggaaatgttagcaacaaactatagagctacaatgtgggaatgatgtca
aaagccaaaatgtaagtattgtacagggcaaataacttgctcctccaaca
aataaatgacaagatgggggttaaaaagcaggaggggcaggcatagggtc
caccatggaggctgtggtgaaaggagatccaaagtaagaggcagcatgaa
ctccataggacaaagacaatggaggagggggtaaggagaggggagagaag
agctaagaaaagaggagggctgattttgagcctcaactctgaaaaacaga
ggattgatttagagagaacaatcaaggtacacagaggatgacgagctggc
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24990210_24991102
seq2: B6Ng01-281A24.b_47_943 (reverse)

seq1  CAGG-CAGATGTGGTGCTGGAGAAGGAGCTGAGAGA-TCTACCTC-AAAG  47
      |||| ||||||||||||||||||||||||| ||||| |||||||| ||||
seq2  CAGGCCAGATGTGGTGCTGGAGAAGGAGCTAAGAGATTCTACCTCAAAAG  50

seq1  CCTTCCCCCAGTGACTGCATCCTCC-AACACCTCCTCCAACAAGGCCACA  96
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  CCTTCCCCCAGTGAGTGCATCCTCCAAACACCTCCTCCAACAAGGCCACA  100

seq1  CCTCCTAATAGTGCCGCTCTGTGGATCTACAGTGGCCATTTTTATTTAAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAATAGTGCCGCTCTGTGGATCTACAGTGGCCATTTTTATTTAAA  150

seq1  CCCTCAAAGTGGCGTTCCTGTCTTATCTCTGTGAGCTCCAGCCTTGTTTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAGTGGCGTTCCTGTCTTATCTCTGTGAGCTCCAGCCTTGTTTC  200

seq1  CCACTTGTCATTCCACACTATCTGGGGTTTTTTTTCCTGTAAATTCTTCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGTCATTCCACACTATCTGGGGTTTTTTTTCCTGTAAATTCTTCC  250

seq1  GGATGCTTCTAAATGTTCTATGCCCTCCTTCTGTCTTCCTACCTCAACAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTCTAAATGTTCTATGCCCTCCTTCTGTCTTCCTACCTCAACAT  300

seq1  CCCTCTGTGTTCAAATCCATCCTATTTAGACCATCACAGAACCAATCCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTGTTCAAATCCATCCTATTTAGACCATCACAGAACCAATCCCA  350

seq1  GATACCAGGGGATGTTCGTATCCTCTTGATTCATGTAAGAGGTTTACTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGGGGATGTTCGTATCCTCTTGATTCATGTAAGAGGTTTACTTC  400

seq1  TTATTTCTTAGATATTTTTGAGTCCTGGCATAGATCTATGTTTTAACTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTAGATATTTTTGAGTCCTGGCATAGATCTATGTTTTAACTCC  450

seq1  TTAGCTAGAAACTATAAGTTGTTTTCAAACAATTCTAAACATTAGTGTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAGAAACTATAAGTTGTTTTCAAACAATTCTAAACATTAGTGTTG  500

seq1  GTGAGATGGCTCAGTGGGTAAAGGTGTTTGTCTCCAAGCCTGACAACATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGGCTCAGTGGGTAAAGGTGTTTGTCTCCAAGCCTGACAACATA  550

seq1  AATTCTGTGCTTGGTGGTGTTTGGAGATAACTCCTACTGTTATCCTCTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTGCTTGGTGGTGTTTGGAGATAACTCCTACTGTTATCCTCTGA  600

seq1  CCTCCACATGAATGCTGTGGTCCTGCACCCCCAGTAATCTTTAGAGTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACATGAATGCTGTGGTCCTGCACCCCCAGTAATCTTTAGAGTTTC  650

seq1  CTATTAGACCCTATAAGTTGGTTGATATTCAGGATCTTTTTTGTTGTTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGACCCTATAAGTTGGTTGATATTCAGGATCTTTTTTGTTGTTGT  700

seq1  TTTGTTTTGTTTTTCGAGACAGGGTTTCTCAGTGTAGGCCTGGCTATCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTTCGAGACAGGGTTTCTCAGTGTAGGCCTGGCTATCCT  750

seq1  GGAACTCACTCTGTAGACCAGGTTAGCCTTGAACTCAGAAATCTGCCTGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTCTGTAGACCAGGTTAGCCTTGAACTCAGAAATCTGCCTGC  800

seq1  CTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCCCAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCCCAGT  850

seq1  AGGGATCATATCTTAATCCTCTTCTTTGCTTCAATCCCCCAGAATTC  893
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCATATCTTAATCCTCTTCTTTGCTTCAATCCCCCAGAATTC  897

seq1: chr13_24872403_24872810
seq2: B6Ng01-281A24.g_68_475

seq1  GAATTCCAACCCCACCTCCCAAAACTACATCTGACTTGGATATTTACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCCCACCTCCCAAAACTACATCTGACTTGGATATTTACTGC  50

seq1  CAGTCTAAGGAAATGTTAGCAACAAACTATAGAGCTACAATGTGGGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAAGGAAATGTTAGCAACAAACTATAGAGCTACAATGTGGGAATG  100

seq1  ATGTCAAAAGCCAAAATGTAAGTATTGTACAGGGCAAATAACTTGCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAAAGCCAAAATGTAAGTATTGTACAGGGCAAATAACTTGCTCCT  150

seq1  CCAACAAATAAATGACAAGATGGGGGTTAAAAAGCAGGAGGGGCAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAATAAATGACAAGATGGGGGTTAAAAAGCAGGAGGGGCAGGCAT  200

seq1  AGGGTCCACCATGGAGGCTGTGGTGAAAGGAGATCCAAAGTAAGAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCACCATGGAGGCTGTGGTGAAAGGAGATCCAAAGTAAGAGGCAG  250

seq1  CATGAACTCCATAGGACAAAGACAATGGAGGAGGGGGTAAGGAGAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTCCATAGGACAAAGACAATGGAGGAGGGGGTAAGGAGAGGGGA  300

seq1  GAGAAGAGCAAAGAAAAGAGGAGGGCTGAGTTTGAGCCTCAACTCTGAAA  350
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  GAGAAGAGCTAAGAAAAGAGGAGGGCTGATTTTGAGCCTCAACTCTGAAA  350

seq1  AACAGAGGATTGATTTAGAGAGAACAATCAAGGTACACAGAGGATGACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGATTGATTTAGAGAGAACAATCAAGGTACACAGAGGATGACGA  400

seq1  GCTGGCTT  408
      ||||||||
seq2  GCTGGCTT  408