BAC Information

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BAC

Clone NameB6Ng01-281B05
Chromosome13 (Build37)
Map Location 18,615,390 - 18,743,926
singlet/doubletdoublet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281B05.bB6Ng01-281B05.g
ACCGA080644GA080645
length1,1951,033
definitionB6Ng01-281B05.b B6Ng01-281B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,615,390 - 18,616,583)(18,742,896 - 18,743,926)
sequence
gaattcaaaatggcctaaccagggatgtgttcttgagtcacaccctgaaa
catggaccagtgctcagagatctccaggattcagaggctaggctccaatc
tctgggcaatttcttcccaactctgggttatggagcaacaaactttacct
taaaagaattgaataagggtatgagaaaattgaaaaagagtgtatgggca
tgtaatttgaagaaagtgaaatgcagaaaattagcaaacaagttagtaaa
taattttaaaaaccagcaacaaagcaatcccctaggagagaatatatgaa
ttctgagttgctgtaagtaaacacctaatctgccacacactgggcacaca
acgaaacaagtatgcaagtaaagagagtggtcagaagagaatagaaataa
ttctgaatgttctcagattccacagataactgacaaaagctgtggacagt
atggaaagtggggaatctacaaatggaaagtaaaatcattaaaataaaac
ttcatttcaagggctcaaaaacagaattcacacaagaaaattaacccagt
gttatactggccagattgctaccagctaagacgcatgaccaagactgttg
atcactgactgtgtttggtcattaaaccagtcttgataagttaaaagaat
taaaatcatatgaaatttgtattacaacaacacagtttgactaggcatca
atagaacaaagagattcaagaagtctccaaagatttgaaaaataaaacat
gcttttaatgtccaagggggcaatataaaatggtaaaacagatggcatta
gaattcacagcaggcaactgaaacagtgtagttacagagaatcacagcaa
tattagagatttttaaaaatgttctcaaatagacggcttaagctccatgt
tagataaagaaaaaaagttagtgcagataaaagaaaaaagaaaaagtaca
caaatagagaatcaacaggatcaaccaaatgggtgaatttttaactaccc
ttatgaaaaggaacaatgtacatatttcccaaagaagaaccagtgaagag
tatatgggtatcaatctgacaaagttgccatgaatacaggatgctactaa
atagctatatgcaataaagtcataacccttagagtgagtgataattccta
gactgtagcattaccaaactgacggcaagggatatatttaaaaag
gaattcttttacaattctgtcgatatctgaaagcttcacactacatgaag
gaggaaacaacagtacaacagtacattttgattcaaatatgagccagaac
ttagaaatccttatcttaaagagacttgaatgctgatgtacagagaaacc
aggcttagctgcacaacattgagccagctggtagtaacaatatgacagct
tcagatacagactgtgtggtcaaaacaacaggtttccatttgtagaaact
ggaagaacttgttaagtttgtatgtagataatgttacatgattctaagca
aaaagaagaaacacataatctgaaacatcaaaatatgtaaaggaagaaac
atgtaacagtatctaaaactgcaacaaatacagaataagagacaaaagtt
ttatatttatcttacaagttgagttcatataatagtagcagtgtgactcc
tattcacagtgagtgaccacccagagctcagggaagactgcctatgttcc
ttttgatagaccatatgtaattcaaggaacacagtttcattaataatttt
gttgaaaaaatggggattgttgaagaaccagacctggtggtatgcaccct
taattgcacattggaaagatgaacagacattttaatttcatttctgggta
tttacattctccgctgatattacattttaaataatatgtttttatttttg
ttaatttactaatagaactggccagaacattatttatttatttatttatt
tatttatttatttatttattttggttttttgagacagggcttttctgtgc
agccctggctatcatggaactcactttggtagaccaggctggcctttgaa
ctcagaatctgcctgcctctgcctccctgagtgttgggattaaaggcatg
tgccaccacgcccagccagaacataatttttaatttatgttttggtttgg
ggggcatttattgagtactgtatttacatattttcctatcccccagttcc
agctccagtctccttcatatcccattccctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18615390_18616583
seq2: B6Ng01-281B05.b_45_1239

seq1  GAATTCAAAATGGCCTAACCAGGGATGTGTTCTTGAGTCACACCCTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATGGCCTAACCAGGGATGTGTTCTTGAGTCACACCCTGAAA  50

seq1  CATGGACCAGTGCTCAGAGATCTCCAGGATTCAGAGGCTAGGCTCCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACCAGTGCTCAGAGATCTCCAGGATTCAGAGGCTAGGCTCCAATC  100

seq1  TCTGGGCAATTTCTTCCCAACTCTGGGTTATGGAGCAACAAACTTTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCAATTTCTTCCCAACTCTGGGTTATGGAGCAACAAACTTTACCT  150

seq1  TAAAAGAATTGAATAAGGGTATGAGAAAATTGAAAAAGAGTGTATGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAATTGAATAAGGGTATGAGAAAATTGAAAAAGAGTGTATGGGCA  200

seq1  TGTAATTTGAAGAAAGTGAAATGCAGAAAATTAGCAAACAAGTTAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTGAAGAAAGTGAAATGCAGAAAATTAGCAAACAAGTTAGTAAA  250

seq1  TAATTTTAAAAACCAGCAACAAAGCAATCCCCTAGGAGAGAATATATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAAAAACCAGCAACAAAGCAATCCCCTAGGAGAGAATATATGAA  300

seq1  TTCTGAGTTGCTGTAAGTAAACACCTAATCTGCCACACACTGGGCACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTGCTGTAAGTAAACACCTAATCTGCCACACACTGGGCACACA  350

seq1  ACGAAACAAGTATGCAAGTAAAGAGAGTGGTCAGAAGAGAATAGAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAACAAGTATGCAAGTAAAGAGAGTGGTCAGAAGAGAATAGAAATAA  400

seq1  TTCTGAATGTTCTCAGATTCCACAGATAACTGACAAAAGCTGTGGACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATGTTCTCAGATTCCACAGATAACTGACAAAAGCTGTGGACAGT  450

seq1  ATGGAAAGTGGGGAATCTACAAATGGAAAGTAAAATCATTAAAATAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGTGGGGAATCTACAAATGGAAAGTAAAATCATTAAAATAAAAC  500

seq1  TTCATTTCAAGGGCTCAAAAACAGAATTCACACAAGAAAATTAACCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCAAGGGCTCAAAAACAGAATTCACACAAGAAAATTAACCCAGT  550

seq1  GTTATACTGGCCAGATTGCTACCAGCTAAGACGCATGACCAAGACTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACTGGCCAGATTGCTACCAGCTAAGACGCATGACCAAGACTGTTG  600

seq1  ATCACTGACTGTGTTTGGTCATTAAACCAGTCTTGATAAGTTAAAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGACTGTGTTTGGTCATTAAACCAGTCTTGATAAGTTAAAAGAAT  650

seq1  TAAAATCATATGAAATTTGTATTACAACAACACAGTTTGACTAGGCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCATATGAAATTTGTATTACAACAACACAGTTTGACTAGGCATCA  700

seq1  ATAGAACAAAGAGATTCAAGAAGTCTCCAAAGATTTGAAAAATAAAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACAAAGAGATTCAAGAAGTCTCCAAAGATTTGAAAAATAAAACAT  750

seq1  GCTTTTAATGTCCAAGGGGGCAATATAAAATGGTAAAACAGATGGCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAATGTCCAAGGGGGCAATATAAAATGGTAAAACAGATGGCATTA  800

seq1  GAATTCACAGCAGGCAACTGAAACAGTGTAGTTACAGAGAATCACAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCAGGCAACTGAAACAGTGTAGTTACAGAGAATCACAGCAA  850

seq1  TATTAGAGATTTTTAAAAATGTTCTCAAATAGACGGCTTAAGCTCCATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGATTTTTAAAAATGTTCTCAAATAGACGGCTTAAGCTCCATGT  900

seq1  TAGATAAAGAAAAAAAGTTAGTGCAGATAAAAGAAAAAAGAAAAAGTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAGAAAAAAAGTTAGTGCAGATAAAAGAAAAAAGAAAAAGTACA  950

seq1  CAAATAGAGAAATCAACAGGATCAACCAAATGGGTGAATTTTTAACTA-C  999
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  CAAATAGAG-AATCAACAGGATCAACCAAATGGGTGAATTTTTAACTACC  999

seq1  CTTATGAAAAGGAACAATGTACATATTTCCCCAAAGAAGAACCAGTGAAG  1049
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTATGAAAAGGAACAATGTACATATTT-CCCAAAGAAGAACCAGTGAAG  1048

seq1  AGTATAATGGTATCAATCTGACAAAAGTGCCAATGATACAGGATGCTACT  1099
      ||||||  |||||||||||||||||  |||||   |||||||||||||||
seq2  AGTATATGGGTATCAATCTGACAAAGTTGCCATGAATACAGGATGCTACT  1098

seq1  -AATAGCTATATGCCAATAAATTCAATACAC-TAGATGAAGTGGATAAAT  1147
       |||||||||||| ||||||| |||  || | ||||   ||| ||| |||
seq2  AAATAGCTATATG-CAATAAAGTCATAACCCTTAGAGTGAGT-GAT-AAT  1145

seq1  TTCTAGAACTGTAGGCATTACCAAACTGACAG--AAGGATA---TTAAAA  1192
      | |||| |||||| |||||||||||||||| |  | |||||   ||||||
seq2  TCCTAG-ACTGTA-GCATTACCAAACTGACGGCAAGGGATATATTTAAAA  1193

seq1  AG  1194
      ||
seq2  AG  1195

seq1: chr13_18742896_18743926
seq2: B6Ng01-281B05.g_65_1097 (reverse)

seq1  AAGAGGGAATGGGGATATGAGAGAG-CTGGAGTGGGAACT-GGGGATAGA  48
      |||||||||| |||||||||  ||| ||||||  |||||| |||||||| 
seq2  AAGAGGGAAT-GGGATATGAAGGAGACTGGAGCTGGAACTGGGGGATAGG  49

seq1  AAAATATGTAAATACAGTACTCATATAAAATTCCCCCAAA-CAAAACATA  97
      ||||||||||||||||||||||| |||||   |||||||| |||||||||
seq2  AAAATATGTAAATACAGTACTCA-ATAAATGCCCCCCAAACCAAAACATA  98

seq1  AATTAAAAATTATGTTCTGGCTGGGCGTGGTGGCACATGCCTTTAATCCC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAATTATGTTCTGGCTGGGCGTGGTGGCACATGCCTTTAATCCC  148

seq1  AACACTCAGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC-AAGGCCAGCC  196
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  AACACTCAGGGAGGCAGAGGCAGGCAGA-TTCTGAGTTCAAAGGCCAGCC  197

seq1  TGGTCTA-CAAAGTGAGTTCCATGATAGCCAGGGCTGCACAGAAAAGCCC  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACCAAAGTGAGTTCCATGATAGCCAGGGCTGCACAGAAAAGCCC  247

seq1  TGTCTCAAAAAACCAAAATAAATAAATAAATAAATAAATAAATAAATAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAAAACCAAAATAAATAAATAAATAAATAAATAAATAAATAAA  297

seq1  TAAATAATGTTCTGGCCAGTTCTATTAGTAAATTAACAAAAATAAAAACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATGTTCTGGCCAGTTCTATTAGTAAATTAACAAAAATAAAAACA  347

seq1  TATTATTTAAAATGTAATATCAGCGGAGAATGTAAATACCCAGAAATGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTAAAATGTAATATCAGCGGAGAATGTAAATACCCAGAAATGAA  397

seq1  ATTAAAATGTCTGTTCATCTTTCCAATGTGCAATTAAGGGTGCATACCAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGTCTGTTCATCTTTCCAATGTGCAATTAAGGGTGCATACCAC  447

seq1  CAGGTCTGGTTCTTCAACAATCCCCATTTTTTCAACAAAATTATTAATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGGTTCTTCAACAATCCCCATTTTTTCAACAAAATTATTAATGA  497

seq1  AACTGTGTTCCTTGAATTACATATGGTCTATCAAAAGGAACATAGGCAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTTCCTTGAATTACATATGGTCTATCAAAAGGAACATAGGCAGT  547

seq1  CTTCCCTGAGCTCTGGGTGGTCACTCACTGTGAATAGGAGTCACACTGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGAGCTCTGGGTGGTCACTCACTGTGAATAGGAGTCACACTGCT  597

seq1  ACTATTATATGAACTCAACTTGTAAGATAAATATAAAACTTTTGTCTCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATATGAACTCAACTTGTAAGATAAATATAAAACTTTTGTCTCTT  647

seq1  ATTCTGTATTTGTTGCAGTTTTAGATACTGTTACATGTTTCTTCCTTTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATTTGTTGCAGTTTTAGATACTGTTACATGTTTCTTCCTTTAC  697

seq1  ATATTTTGATGTTTCAGATTATGTGTTTCTTCTTTTTGCTTAGAATCATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGATGTTTCAGATTATGTGTTTCTTCTTTTTGCTTAGAATCATG  747

seq1  TAACATTATCTACATACAAACTTAACAAGTTCTTCCAGTTTCTACAAATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTATCTACATACAAACTTAACAAGTTCTTCCAGTTTCTACAAATG  797

seq1  GAAACCTGTTGTTTTGACCACACAGTCTGTATCTGAAGCTGTCATATTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGTTGTTTTGACCACACAGTCTGTATCTGAAGCTGTCATATTGT  847

seq1  TACTACCAGCTGGCTCAATGTTGTGCAGCTAAGCCTGGTTTCTCTGTACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCAGCTGGCTCAATGTTGTGCAGCTAAGCCTGGTTTCTCTGTACA  897

seq1  TCAGCATTCAAGTCTCTTTAAGATAAGGATTTCTAAGTTCTGGCTCATAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTCAAGTCTCTTTAAGATAAGGATTTCTAAGTTCTGGCTCATAT  947

seq1  TTGAATCAAAATGTACTGTTGTACTGTTGTTTCCTCCTTCATGTAGTGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCAAAATGTACTGTTGTACTGTTGTTTCCTCCTTCATGTAGTGTG  997

seq1  AAGCTTTCAGATATCGACAGAATTGTAAAAGAATTC  1031
      ||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCAGATATCGACAGAATTGTAAAAGAATTC  1033