BAC Information

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BAC

Clone NameB6Ng01-281N07
Chromosome13 (Build37)
Map Location 28,408,129 - 28,409,277
singlet/doubletsinglet
Overlap genenone
Upstream genePrl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388
Downstream geneLOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281N07.bB6Ng01-281N07.g
ACCGA081204GA081205
length8341,154
definitionB6Ng01-281N07.b B6Ng01-281N07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaccaaggaatcttgaatgactaagaagcacccaaagaaatg
ttcaacattcttagtcatcagggagatgtacatcaaaacaatcctgaaat
tccacctcacaccagccagaatggctaagatcaaaaactctggtgacagc
aggtgttggcaaggatgtggagaaagaggaacactcctccattgctggta
gtactctaagctggtaaaagaactttggaaatcaatcttctggttcctga
gaaaattaaatacttctacctgaacacccagctataccattactgggcat
atatccaaaaaaatgttccaacatattacaaggacacatgctccactatg
ttcatagcagccttattcataatagccagaagctggaaagaacccagatg
tccttcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagtgattaaaaacaatgacttcatgaaatttttaggcaaa
cagatggaactagaaaatatcatcccgagtgaggcaacccaatcacaaaa
gaatacacatggtatgcactcactggtaactggatattagcccagaagct
cacaatgcccctgattcaacccacagattatagaaggaaggaagaccagg
gtgtgaatgcttcaattccaccttgagaggggaacagaatcatcactgga
ggtggaggaagagggagacttggtagggagaaaggagagggagaaaataa
gggggcagtttcagtactggaggggatggcagagaagtacagagggtcaa
ggaagtcaaataaaaatatagtacgatgtggtgc
gaattccagttcatacataggaaaatgcactagatgtccatgaagacttc
aattaagatctggtcttaacttaaggattcctgtggttggtttttatgtg
agtgctgttcttttataggccattgtttgaattatactgaacccactcag
cttccagaattagacataatgttcaagccctctcaaataaggaacaggtc
ccaagatcatatagaacagaaagaaattctaaaaaactcccccttcaatc
aattcagagactgaaaacagaatgctatttattgttttcagtgtatcaca
gattctaggtgctacgaaaagatgagtcttatcatctcttctcttagcaa
agtatggcattatggttcagttcaataacaaattattctaggtatatcac
ttaaaataaattagtaaaggcgttttcattttgatagaaaatttgaaaag
cccaagggaggaaataagtcccatcaaaatagcaataaccttctggatgc
catcagaatctaaaacacatgacctctgagaagtagcaaggatcatggca
aggctgcctggtgagatgtgaacccatcaaagaagcacttacagcaggag
tttgaacctagtaggtaatacaacccctgttagaaatacccaccaagata
ggaggaaaagaggatataccctagtgtgttcctttttctgaggtcagatt
tcctactaatgggttcagcttaatggaaccaaaggttcatgacagagatc
agtgcaaggaaaatataggggatggagccaaggaccaacagccaacctca
gcataaaaggcatctgtcccttcgtctttatcgtgctatcacttccagac
ctcggcatatctccgtctctgtttttccttcaattgattctgtctctttg
tagtttgtgagcttagctctaccaaaggaaaagagaatttaggtttgttt
gtctgactcaaccctacagcagtgctattattaacatcactgttattgtt
agcattcagtaattacattttattatacaagtcattcgtgttacactgat
ttcccttttgttgaagactgtatccatcacccaaaatatagcttgaatgg
ccaggctggcacgggtaatattcttatatagctgaccgagattgccactt
cagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28408129_28409277
seq2: B6Ng01-281N07.g_69_1222

seq1  GAATTCCAGTTCATACATAGGAAAATGCACTAGATGTCCATGAAGACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTCATACATAGGAAAATGCACTAGATGTCCATGAAGACTTC  50

seq1  AATTAAGATCTGGTCTTAACTTAAGGATTCCTGTGGTTGGTTTTTATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGATCTGGTCTTAACTTAAGGATTCCTGTGGTTGGTTTTTATGTG  100

seq1  AGTGCTGTTCTTTTATAGGCCATTGTTTGAATTATACTGAACCCACTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTTCTTTTATAGGCCATTGTTTGAATTATACTGAACCCACTCAG  150

seq1  CTTCCAGAATTAGACATAATGTTCAAGCCCTCTCAAATAAGGAACAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAATTAGACATAATGTTCAAGCCCTCTCAAATAAGGAACAGGTC  200

seq1  CCAAGATCATATAGAACAGAAAGAAATTCTAAAAAACTCCCCCTTCAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATCATATAGAACAGAAAGAAATTCTAAAAAACTCCCCCTTCAATC  250

seq1  AATTCAGAGACTGAAAACAGAATGCTATTTATTGTTTTCAGTGTATCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGACTGAAAACAGAATGCTATTTATTGTTTTCAGTGTATCACA  300

seq1  GATTCTAGGTGCTACGAAAAGATGAGTCTTATCATCTCTTCTCTTAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGGTGCTACGAAAAGATGAGTCTTATCATCTCTTCTCTTAGCAA  350

seq1  AGTATGGCATTATGGTTCAGTTCAATAACAAATTATTCTAGGTATATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGCATTATGGTTCAGTTCAATAACAAATTATTCTAGGTATATCAC  400

seq1  TTAAAATAAATTAGTAAAGGCGTTTTCATTTTGATAGAAAATTTGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAATTAGTAAAGGCGTTTTCATTTTGATAGAAAATTTGAAAAG  450

seq1  CCCAAGGGAGGAAATAAGTCCCATCAAAATAGCAATAACCTTCTGGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGGAGGAAATAAGTCCCATCAAAATAGCAATAACCTTCTGGATGC  500

seq1  CATCAGAATCTAAAACACATGACCTCTGAGAAGTAGCAAGGATCATGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAATCTAAAACACATGACCTCTGAGAAGTAGCAAGGATCATGGCA  550

seq1  AGGCTGCCTGGTGAGATGTGAACCCATCAAAGAAGCACTTACAGCAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCCTGGTGAGATGTGAACCCATCAAAGAAGCACTTACAGCAGGAG  600

seq1  TTTGAACCTAGTAGGTAATACAACCCCTGTTAGAAATACCCACCAAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCTAGTAGGTAATACAACCCCTGTTAGAAATACCCACCAAGATA  650

seq1  GGAGGAAAAGAGGATATACCCTAGTGTGTTCCTTTTTCTGAGGTCAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAAGAGGATATACCCTAGTGTGTTCCTTTTTCTGAGGTCAGATT  700

seq1  TCCTACTAATGGGTTCAGCTTAATGGAACCAAAGGTTCATGACAGAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTAATGGGTTCAGCTTAATGGAACCAAAGGTTCATGACAGAGATC  750

seq1  AGTGCAAGGAAAATATAGGGGATGGAGCCAAGGACCAACAGCCAACCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAGGAAAATATAGGGGATGGAGCCAAGGACCAACAGCCAACCTCA  800

seq1  GCATAAAAGGCATCTGTCCCTTCGTCTTTATCGTGCTATCACTTCCAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAAGGCATCTGTCCCTTCGTCTTTATCGTGCTATCACTTCCAGAC  850

seq1  CTCGGCATATCTCCGTCTCTGTTTTTCCTTCAATTGATTCTGTCTCTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCATATCTCCGTCTCTGTTTTTCCTTCAATTGATTCTGTCTCTTTG  900

seq1  TAGTTTGTGAGCTTAGCTCTACCAAAGGAAAGGAGAATTTAGGTTTGTTT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAGTTTGTGAGCTTAGCTCTACCAAAGGAAAAGAGAATTTAGGTTTGTTT  950

seq1  GTCTGACTCAA-CCTACAGCAGTGCTATTATTAACATCACTGTTATTGTT  999
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACTCAACCCTACAGCAGTGCTATTATTAACATCACTGTTATTGTT  1000

seq1  AGCAATTCAAGTAATTACATTTTA-TATACAAGTCATTCGTGTTACACTG  1048
      ||| |||| ||||||||||||||| |||||||||||||||||||||||||
seq2  AGC-ATTC-AGTAATTACATTTTATTATACAAGTCATTCGTGTTACACTG  1048

seq1  A-TTCCCTTTTG-TGAAGACTGTATCCCATCACCC-AAATATAGC-TGA-  1093
      | |||||||||| |||||||||||| ||||||||| ||||||||| ||| 
seq2  ATTTCCCTTTTGTTGAAGACTGTAT-CCATCACCCAAAATATAGCTTGAA  1097

seq1  -TGCCA-GCTGGCAACGGGTTATA----TCTATAGCCTTGGACAGAGGAA  1137
        |||| |||||| |||||| |||    | ||||||    ||| || || 
seq2  TGGCCAGGCTGGC-ACGGGTAATATTCTTATATAGC---TGACCGA-GAT  1142

seq1  TGCCACTTCAGC  1149
      ||||||||||||
seq2  TGCCACTTCAGC  1154