BAC Information

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BAC

Clone NameB6Ng01-281N09
Chromosome13 (Build37)
Map Location 37,945,152 - 38,080,792
singlet/doubletdoublet
Overlap geneRreb1, Ssr1
Upstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
Downstream geneCage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281N09.bB6Ng01-281N09.g
ACCGA081208GA081209
length883577
definitionB6Ng01-281N09.b B6Ng01-281N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,079,920 - 38,080,792)(37,945,152 - 37,945,728)
sequence
gaatttcaagatcatcctgtctcagccccccaagtgttgggattacagac
atgcattatcgggcctgtctggaatttgggaatatatttgaatgtttaaa
ggtcaggaaaatactaaatgtctacagttaggccttggttatagcataac
attaatttgaaaacgaaacaagaaacttatatttgcatatttcttgctcc
aaatacgtgggaccagaagtggttttttctttgtttgtattgctctgttt
ggggctttagagtaaggagctatttggatgatggagtttatttcacgtac
agtctcatcacttgagacttgtatcttccacgtgtagcatcctgttggct
tacaaagggttagactttggagcatttccaatcttctggttagggctcct
caaattcttgagtatgtttatttattgagagctttgtagatagcattgtt
cttaatacttaatacatacagtatttaatcccagcaaaccctgagggtat
agttagtgttgattttaggtttagagaggttaagaaacttgaactaaggt
tacccagagcataaaatcaattgtggagacaggattcaagtccagatatg
cctgttctatggcctgtgttatacgaggtgaatcagcccattagactgac
tacagtgttatagaagacttaacatcagaaagcgttagttttcttggtct
taaagtattctgtttttctatgtattccaatttcatgcccacagaaagtg
attggattgctgtgggtgtgctctgtagttcttcacatgcctaagatgta
caaagccccattctgttctcaacactttagaaaggggaattttgaagttt
tgtgacctccttcctcatttaatttgtagtaat
gaattcctctccccaccccctccagtagcttactttgggtctcagtgatt
agaaataggcacattgtttgtaagagagaagttattggagaaaggggtta
tggaaacacacacacacacacacacacacacacacacacaagcttgaaca
ggcctactttcttgagaagaaagtggttttttttttttaggtgtaacaga
tcataaaataaataacattctctaaagacacgaatctataaacaaagcat
aaatatctttatttaaaatggattaagttctgaagcctaatggctttgtt
gtagtaccatgtggcttgttcaggtctgtcactaaacgtgtgttgccctc
agaattacattagaaagcaggcatgcactggctcacagattcttaagtgc
agtgcggtggtagtgaaacagaaactagatacagatactgaggaggctaa
aaagatgaggtcgccacacacctggtcctttcccttcccttcttccctac
ccttcttcccttcccttaccttcccttcctcccttccctccccttccctc
ccctccccatccctccccatccctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38079920_38080792
seq2: B6Ng01-281N09.b_51_929 (reverse)

seq1  ATTACTACAAAATAAAATGAGG-AGGA-GTCAC-AAACT--CAAATTCCC  45
      |||||||| |||| |||||||| |||| ||||| |||||   ||||||||
seq2  ATTACTAC-AAATTAAATGAGGAAGGAGGTCACAAAACTTCAAAATTCCC  49

seq1  CTTTCTAAAGTGTTGAGAACAGAATGGGGCTTTGTACATCTTAGGCATGT  95
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAAAGTGTTGAGAACAGAATGGGGCTTTGTACATCTTAGGCATGT  99

seq1  GAAGAACTACAGAGCACACCCACAGCAATCCAATCACTTTCTGTGGGCAT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTACAGAGCACACCCACAGCAATCCAATCACTTTCTGTGGGCAT  149

seq1  GAAATTGGAATACATAG-AAAACAGAATAC-TTAAGACCAAGAAAACTAA  193
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  GAAATTGGAATACATAGAAAAACAGAATACTTTAAGACCAAGAAAACTAA  199

seq1  CGCTTTCTGATGTTAAGTCTTCTATAACACTGTAGTCAGTCTAATGGGCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTCTGATGTTAAGTCTTCTATAACACTGTAGTCAGTCTAATGGGCT  249

seq1  GATTCACCTCGTATAACACAGGCCATAGAACAGGCATATCTGGACTTGAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACCTCGTATAACACAGGCCATAGAACAGGCATATCTGGACTTGAA  299

seq1  TCCTGTCTCCACAATTGATTTTATGCTCTGGGTAACCTTAGTTCAAGTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCCACAATTGATTTTATGCTCTGGGTAACCTTAGTTCAAGTTT  349

seq1  CTTAACCTCTCTAAACCTAAAATCAACACTAACTATACCCTCAGGGTTTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCTCTCTAAACCTAAAATCAACACTAACTATACCCTCAGGGTTTG  399

seq1  CTGGGATTAAATACTGTATGTATTAAGTATTAAGAACAATGCTATCTACA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAATACTGTATGTATTAAGTATTAAGAACAATGCTATCTACA  449

seq1  AAGCTCTCAATAAATAAACATACTCAAGAATTTGAGGAGCCCTAACCAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCAATAAATAAACATACTCAAGAATTTGAGGAGCCCTAACCAGA  499

seq1  AGATTGGAAATGCTCCAAAGTCTAACCCTTTGTAAGCCAACAGGATGCTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGAAATGCTCCAAAGTCTAACCCTTTGTAAGCCAACAGGATGCTA  549

seq1  CACGTGGAAGATACAAGTCTCAAGTGATGAGACTGTACGTGAAATAAACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGAAGATACAAGTCTCAAGTGATGAGACTGTACGTGAAATAAACT  599

seq1  CCATCATCCAAATAGCTCCTTACTCTAAAGCCCCAAACAGAGCAATACAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCCAAATAGCTCCTTACTCTAAAGCCCCAAACAGAGCAATACAA  649

seq1  ACAAAGAAAAAACCACTTCTGGTCCCACGTATTTGGAGCAAGAAATATGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAAAACCACTTCTGGTCCCACGTATTTGGAGCAAGAAATATGC  699

seq1  AAATATAAGTTTCTTGTTTCGTTTTCAAATTAATGTTATGCTATAACCAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAGTTTCTTGTTTCGTTTTCAAATTAATGTTATGCTATAACCAA  749

seq1  GGCCTAACTGTAGACATTTAGTATTTTCCTGACCTTTAAACATTCAAATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAACTGTAGACATTTAGTATTTTCCTGACCTTTAAACATTCAAATA  799

seq1  TATTCCCAAATTCCAGACAGGCCCGATAATGCATGTCTGTAATCCCAACA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCAAATTCCAGACAGGCCCGATAATGCATGTCTGTAATCCCAACA  849

seq1  CTTGGGGGGCTGAGACAGGATGATCTTGAA  873
      ||||||||||||||||||||||||||||||
seq2  CTTGGGGGGCTGAGACAGGATGATCTTGAA  879

seq1: chr13_37945152_37945728
seq2: B6Ng01-281N09.g_74_650

seq1  GAATTCCTCTCCCCACCCCCTCCAGTAGCTTACTTTGGGTCTCAGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCCCCACCCCCTCCAGTAGCTTACTTTGGGTCTCAGTGATT  50

seq1  AGAAATAGGCACATTGTTTGTAAGAGAGAAGTTATTGGAGAAAGGGGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGGCACATTGTTTGTAAGAGAGAAGTTATTGGAGAAAGGGGTTA  100

seq1  TGGAAACACACACACACACACACACACACACACACACACAAGCTTGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACACACACACACACACACACACACACACACACACAAGCTTGAACA  150

seq1  GGCCTACTTTCTTGAGAAGAAAGTGGTTTTTTTTTTTTAGGTGTAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACTTTCTTGAGAAGAAAGTGGTTTTTTTTTTTTAGGTGTAACAGA  200

seq1  TCATAAAATAAATAACATTCTCTAAAGACACGAATCTATAAACAAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATAAATAACATTCTCTAAAGACACGAATCTATAAACAAAGCAT  250

seq1  AAATATCTTTATTTAAAATGGATTAAGTTCTGAAGCCTAATGGCTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTATTTAAAATGGATTAAGTTCTGAAGCCTAATGGCTTTGTT  300

seq1  GTAGTACCATGTGGCTTGTTCAGGTCTGTCACTAAACGTGTGTTGCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACCATGTGGCTTGTTCAGGTCTGTCACTAAACGTGTGTTGCCCTC  350

seq1  AGAATTACATTAGAAAGCAGGCATGCACTGGCTCACAGATTCTTAAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACATTAGAAAGCAGGCATGCACTGGCTCACAGATTCTTAAGTGC  400

seq1  AGTGCGGTGGTAGTGAAACAGAAACTAGATACAGATACTGAGGAGGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGGTGGTAGTGAAACAGAAACTAGATACAGATACTGAGGAGGCTAA  450

seq1  AAAGATGAGGTCGCCACACACCTGGTCCTTTCCCTTCCCTTCTTCCCTTC  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAGATGAGGTCGCCACACACCTGGTCCTTTCCCTTCCCTTCTTCCCTAC  500

seq1  CCTTCTTCCCTTCCCTTTCCTTCCCTTCCTCCCTTCCCTCCCCTTCCCTC  550
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTTCTTCCCTTCCCTTACCTTCCCTTCCTCCCTTCCCTCCCCTTCCCTC  550

seq1  CCCTCCCCTTCCCTCCCCTTCCCTCCC  577
      |||||||| ||||||||| ||||||||
seq2  CCCTCCCCATCCCTCCCCATCCCTCCC  577