BAC Information

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BAC

Clone NameB6Ng01-282B07
Chromosome13 (Build37)
Map Location 34,110,255 - 34,274,679
singlet/doubletdoublet
Overlap geneRipk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik
Upstream geneSerpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik
Downstream geneLOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282B07.bB6Ng01-282B07.g
ACCGA081392GA081393
length1,1451,173
definitionB6Ng01-282B07.b B6Ng01-282B07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,110,255 - 34,111,405)(34,273,532 - 34,274,679)
sequence
gaattctgccatttaggttagccctgtagttgaggaaattgaaggagaca
tgagcgtttggcccgttctgcacccatcctatcccctagattacctagga
gtatgaagtaggccaaaggagaagagcagagatacaataggaggcattca
ggaatgtacaaagcatcatgttgttgtatttatgtgagaaaagagaactg
gagtgccacccattcccactgtatagaccaagctgacctcaaatttacag
aaatcccctgcctctgccatctggttgctgtgattaaaggtatgccacca
tgcatagctaaagccccatctgttacaagtcccacaactcctgaccgtgt
tgctggctgaggaccaggtcatacactgaaggttgttcaaaattcaaact
gtagcattttcttgtaggttcttaaacttgttctagagttttagtttgat
tcatctgtggtgtttttttcttgcatggttttcaaggacattctaggcat
gatattatccatatgttatttgatcatatggtttaattttccagtttgcc
attttatcaccctgagttaagtatgtaaacctttcctttctccttatgca
tttctcatttatacatgtggaatgcatcagactatgttgcagctttcctt
cagtcttcataaactctaaaagaaagttttttgcttttatttacccattg
ttttgattgtcatgcgtcatttttccgatgctacatatatttacacttct
aacactatgcaggctatcatgacattccacatttaagagcttagtctcat
gtgactatcaccacatggtacccacttaggatgcctaggcttctgcccag
ctgactatgagtttgggtgtatattccccatctcagcttagaatagactc
atctggctcaaaaatattgcacttaaatataactcaatgttataaacatt
aaattcagaaacaaccagatagaagagtgtacaggcagtgtgttcaggta
ggggttgctgagcttctggaccctctgcagggatccccaggcatctgtag
gtgtgcctcccctctcagcaattttttttcttcactacctagaaaactct
ttgaacccacatttatggctttaaattagaagctttattatgtgg
gaattctgtctttccagacatccgaggaacacatctgagaaaccagatgc
tctggaaataaccctctgaagactttcttttctgccattcaatgtttgta
tttattttggtcatttttacgagaagcactttatccccttcccccctcca
ctgatcatgaagcagaacctccttcaggagtgagggtcactctgaggaag
tccctgtaagtgaccaatgcagtggccagtcccctccctggaggccagac
tcaatttccttctccactcaaggagacagaggtcatctgtaggccaggac
ccctacctccaggctccctgccatggacagctgtgcctctcaagcagaga
gtccttgggactacattttacacagaggaaaatgtacatgaattgttgtt
tttctttttttcttttcctagagtctgtatattttaaagttgggtacttt
actttctgtttgttaggtagtttccatgctgtgttgggaaaacagcctcc
agatgtcatacgagccagcttaatctttctttccttcaggatcatccttt
tgtacttgatctggaagtttttgtggggaaacttccatacttcaccagaa
atcctacatgatgagaaagcgccagttcccgccgccgcccggtttgctta
gttaagtccacagcagctgttgtgttgaggtgggagccatgtttgtttct
gctaagacactttccttgactgagctccagcagcaaaggtccctcttccc
cagccagccctgttgccagtactactttgaaaatgtgggccacttccaga
actccaaacaaaaggaaaataacagaaaaaagggcaaatcccaggaggga
gtctcgattgtcccacacatggccgcccactcacgtctccagcacatacc
atagagagctccagcttggatggctgccactctgacatcacaacagtgcc
acagcacctggaagcggtccacctcatgtcttctcaatggcttcctgcct
tgtcactcactcagcaacaaaagggcccctgggcaaggaagtgcagggtt
gctcacaaggtcagtcccacgtggctctcttagtcccatgaaagcaagca
agaagttgaagagaaatgcaattagcctcatccaaggctcagctcaatcc
tggctaaccagtccctcccagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_34110255_34111405
seq2: B6Ng01-282B07.b_48_1192

seq1  GAATTCTGCCATTTAGGTTAGCCCTGTAGTTGAGGAAATTGAAGGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCATTTAGGTTAGCCCTGTAGTTGAGGAAATTGAAGGAGACA  50

seq1  TGAGCGTTTGGCCCGTTCTGCACCCATCCTATCCCCTAGATTACCTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGTTTGGCCCGTTCTGCACCCATCCTATCCCCTAGATTACCTAGGA  100

seq1  GTATGAAGTAGGCCAAAGGAGAAGAGCAGAGATACAATAGGAGGCATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGTAGGCCAAAGGAGAAGAGCAGAGATACAATAGGAGGCATTCA  150

seq1  GGAATGTACAAAGCATCATGTTGTTGTATTTATGTGAGAAAAGAGAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTACAAAGCATCATGTTGTTGTATTTATGTGAGAAAAGAGAACTG  200

seq1  GAGTGCCACCCATTCCCACTGTATAGACCAAGCTGACCTCAAATTTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCACCCATTCCCACTGTATAGACCAAGCTGACCTCAAATTTACAG  250

seq1  AAATCCCCTGCCTCTGCCATCTGGTTGCTGTGATTAAAGGTATGCCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCTGCCTCTGCCATCTGGTTGCTGTGATTAAAGGTATGCCACCA  300

seq1  TGCATAGCTAAAGCCCCATCTGTTACAAGTCCCACAACTCCTGACCGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGCTAAAGCCCCATCTGTTACAAGTCCCACAACTCCTGACCGTGT  350

seq1  TGCTGGCTGAGGACCAGGTCATACACTGAAGGTTGTTCAAAATTCAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTGAGGACCAGGTCATACACTGAAGGTTGTTCAAAATTCAAACT  400

seq1  GTAGCATTTTCTTGTAGGTTCTTAAACTTGTTCTAGAGTTTTAGTTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATTTTCTTGTAGGTTCTTAAACTTGTTCTAGAGTTTTAGTTTGAT  450

seq1  TCATCTGTGGTGTTTTTTTCTTGCATGGTTTTCAAGGACATTCTAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTGGTGTTTTTTTCTTGCATGGTTTTCAAGGACATTCTAGGCAT  500

seq1  GATATTATCCATATGTTATTTGATCATATGGTTTAATTTTCCAGTTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATCCATATGTTATTTGATCATATGGTTTAATTTTCCAGTTTGCC  550

seq1  ATTTTATCACCCTGAGTTAAGTATGTAAACCTTTCCTTTCTCCTTATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCACCCTGAGTTAAGTATGTAAACCTTTCCTTTCTCCTTATGCA  600

seq1  TTTCTCATTTATACATGTGGAATGCATCAGACTATGTTGCAGCTTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATTTATACATGTGGAATGCATCAGACTATGTTGCAGCTTTCCTT  650

seq1  CAGTCTTCATAAACTCTAAAAGAAAGTTTTTTGCTTTTATTTACCCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCATAAACTCTAAAAGAAAGTTTTTTGCTTTTATTTACCCATTG  700

seq1  TTTTGATTGTCATGCGTCATTTTTCCGATGCTACATATATTTACACTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTGTCATGCGTCATTTTTCCGATGCTACATATATTTACACTTCT  750

seq1  AACACTATGCAGGCTATCATGACATTCCACATTTAAGAGCTTAGTCTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATGCAGGCTATCATGACATTCCACATTTAAGAGCTTAGTCTCAT  800

seq1  GTGACTATCACCACATGGTACCCACTTAGGATGCCTAGGCTTCTGCCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTATCACCACATGGTACCCACTTAGGATGCCTAGGCTTCTGCCCAG  850

seq1  CTGACTATGAGTTTGGGTGTATATTCCCCATCTCAGGCTTAGAATAGACT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTGACTATGAGTTTGGGTGTATATTCCCCATCTCA-GCTTAGAATAGACT  899

seq1  CATCTGGCTCAAAAAATATTGCACTTAAATATAACTCAATGTTATAAAAC  950
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  CATCTGGCTC-AAAAATATTGCACTTAAATATAACTCAATGTTAT-AAAC  947

seq1  ATTAAATTCAGAAACAACCAGATAGAAGAGGTGTACAGGCAGTGTGTTCA  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTAAATTCAGAAACAACCAGATAGAAGA-GTGTACAGGCAGTGTGTTCA  996

seq1  GGTAGGGGTTGCTGAGCTTCTGGACCCTCTGCAGGGGATCCCCAGGCCAT  1050
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  GGTAGGGGTTGCTGAGCTTCTGGACCCTCTGCA-GGGATCCCCAGG-CAT  1044

seq1  CTGTAGGTGTGCCT-CCCTCTCAGCATTTTTTTTTCTTCACTAACCTAG-  1098
      |||||||||||||| ||||||||||| ||||||||||||||| |||||| 
seq2  CTGTAGGTGTGCCTCCCCTCTCAGCAATTTTTTTTCTTCACT-ACCTAGA  1093

seq1  AAACTCTTTGGACCCCAACATTTATGGGTTTATA-TAGGAGTTTTATTAT  1147
      |||||||||| ||||  |||||||||| |||| | ||| || ||||||||
seq2  AAACTCTTTGAACCC--ACATTTATGGCTTTAAATTAGAAGCTTTATTAT  1141

seq1  GTGG  1151
      ||||
seq2  GTGG  1145

seq1: chr13_34273532_34274679
seq2: B6Ng01-282B07.g_70_1242 (reverse)

seq1  TCCTGGGAGG--CTGGT---ACAGGATGGGAGTTGAGCTTTGG-TGAG--  42
      ||||||||||  |||||    ||||||  ||| ||||| |||| ||||  
seq2  TCCTGGGAGGGACTGGTTAGCCAGGAT-TGAGCTGAGCCTTGGATGAGGC  49

seq1  TTATTGC-TTTCTCT--CACTTCTTGC-TGCTTTCAAGGGACT-AGAG-G  86
      | ||||| |||||||   ||||||||| |||||||| |||||| |||| |
seq2  TAATTGCATTTCTCTTCAACTTCTTGCTTGCTTTCATGGGACTAAGAGAG  99

seq1  CCACGT-GGACTGACC-TGTGAGCAA-CCTGCACT--CCTGCCCA-GGGC  130
      |||||| ||||||||| ||||||||| ||||||||  | |||||| ||||
seq2  CCACGTGGGACTGACCTTGTGAGCAACCCTGCACTTCCTTGCCCAGGGGC  149

seq1  CCTTTTG-TGCTGAGTGAGTGAC-AGGCAGGAAGCCATTGAGGAAGACAT  178
      ||||||| ||||||||||||||| ||||||||||||||||| ||||||||
seq2  CCTTTTGTTGCTGAGTGAGTGACAAGGCAGGAAGCCATTGA-GAAGACAT  198

seq1  GAGGTGGACCGCCTCCAGGTGCTGTGGGCACTGTTGTGATGTCAGAGTGG  228
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  GAGGTGGACCGCTTCCAGGTGCTGT-GGCACTGTTGTGATGTCAGAGTGG  247

seq1  CAGCCATCCAAGCTGGAGCTCTCTATGGTATGTGCTGGAGACGTGAGT-G  277
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGCCATCCAAGCTGGAGCTCTCTATGGTATGTGCTGGAGACGTGAGTGG  297

seq1  GCGGCCATGTGTGGGAC-ATCGAGACTCCCTCCTGGGATTTGCC--TTTT  324
      ||||||||||||||||| ||||||||||||||||||||||||||  ||||
seq2  GCGGCCATGTGTGGGACAATCGAGACTCCCTCCTGGGATTTGCCCTTTTT  347

seq1  TCTGTTATTTTCCTTTTGTTTGGAGTTCTGGAAGTGG-CCACATTTTC-A  372
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  TCTGTTATTTTCCTTTTGTTTGGAGTTCTGGAAGTGGCCCACATTTTCAA  397

seq1  AGTAGTACTGGCAACAGGGCTGGCTGGGGAAGAGGGACCTTTGCTGCTGG  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTACTGGCAACAGGGCTGGCTGGGGAAGAGGGACCTTTGCTGCTGG  447

seq1  AGCTCAGTCAAGGAAAGTGTCTTAGCAGAAACAAACATGGCTCCCACCTC  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTCAAGGAAAGTGTCTTAGCAGAAACAAACATGGCTCCCACCTC  497

seq1  AACACAACAGCTGCTGTGGACTTAACTAAGCAAACCGGGCGGCGGCGGGA  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAACAGCTGCTGTGGACTTAACTAAGCAAACCGGGCGGCGGCGGGA  547

seq1  ACTGGCGCTTTCTCATCATGTAGGATTTCTGGTGAAGTATGGAAGTTTCC  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCGCTTTCTCATCATGTAGGATTTCTGGTGAAGTATGGAAGTTTCC  597

seq1  CCACAAAAACTTCCAGATCAAGTACAAAAGGATGATCCTGAAGGAAAGAA  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAAACTTCCAGATCAAGTACAAAAGGATGATCCTGAAGGAAAGAA  647

seq1  AGATTAAGCTGGCTCGTATGACATCTGGAGGCTGTTTTCCCAACACAGCA  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGCTGGCTCGTATGACATCTGGAGGCTGTTTTCCCAACACAGCA  697

seq1  TGGAAACTACCTAACAAACAGAAAGTAAAGTACCCAACTTTAAAATATAC  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTACCTAACAAACAGAAAGTAAAGTACCCAACTTTAAAATATAC  747

seq1  AGACTCTAGGAAAAGAAAAAAAGAAAAACAACAATTCATGTACATTTTCC  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTAGGAAAAGAAAAAAAGAAAAACAACAATTCATGTACATTTTCC  797

seq1  TCTGTGTAAAATGTAGTCCCAAGGACTCTCTGCTTGAGAGGCACAGCTGT  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAAAATGTAGTCCCAAGGACTCTCTGCTTGAGAGGCACAGCTGT  847

seq1  CCATGGCAGGGAGCCTGGAGGTAGGGGTCCTGGCCTACAGATGACCTCTG  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCAGGGAGCCTGGAGGTAGGGGTCCTGGCCTACAGATGACCTCTG  897

seq1  TCTCCTTGAGTGGAGAAGGAAATTGAGTCTGGCCTCCAGGGAGGGGACTG  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGAGTGGAGAAGGAAATTGAGTCTGGCCTCCAGGGAGGGGACTG  947

seq1  GCCACTGCATTGGTCACTTACAGGGACTTCCTCAGAGTGACCCTCACTCC  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGCATTGGTCACTTACAGGGACTTCCTCAGAGTGACCCTCACTCC  997

seq1  TGAAGGAGGTTCTGCTTCATGATCAGTGGAGGGGGGAAGGGGATAAAGTG  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGGTTCTGCTTCATGATCAGTGGAGGGGGGAAGGGGATAAAGTG  1047

seq1  CTTCTCGTAAAAATGACCAAAATAAATACAAACATTGAATGGCAGAAAAG  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCGTAAAAATGACCAAAATAAATACAAACATTGAATGGCAGAAAAG  1097

seq1  AAAGTCTTCAGAGGGTTATTTCCAGAGCATCTGGTTTCTCAGATGTGTTC  1122
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTCAGAGGGTTATTTCCAGAGCATCTGGTTTCTCAGATGTGTTC  1147

seq1  CTCGGATGTCTGGAAAGACAGAATTC  1148
      ||||||||||||||||||||||||||
seq2  CTCGGATGTCTGGAAAGACAGAATTC  1173