BAC Information

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BAC

Clone NameB6Ng01-282K02
Chromosome13 (Build37)
Map Location 104,800,068 - 104,941,822
singlet/doubletdoublet
Overlap geneNln, Sgtb, 2410002O22Rik
Upstream geneMast4, EG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik
Downstream geneLOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282K02.bB6Ng01-282K02.g
ACCGA081796GA081797
length2941,101
definitionB6Ng01-282K02.b B6Ng01-282K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,800,068 - 104,800,361)(104,940,722 - 104,941,822)
sequence
ttttttttttttttttttttggttttttccaaacagggtttctctgtgta
gccctggctgtcctggagctcactttgtagaccaggctggccttgaactc
aaaaatccccctgcctctgcctccagagtgctgggattaaaggcgtgcac
caccatgcccggctccagttgaattcttaacaaaaattatttatcaatta
tctatctacctattaatcatctatcacctatctctttatgtacttaccat
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaatgtg
gaattcatattttccaccttctgtttacaataagcagtgtttgcttatta
tttccctgtgtataacagcctcagcagcctcagcactaaagccttgtcct
cattttccagacgttaaatgacttggtactaactgttcagactaacttga
ttttccattatgctgctttcctttcattttatctaagctgttcatcatgt
tatacagagaaatgcattttaaaaattgaagtgtgggctttggttacttt
aagagcaatggatttatgggatatattcacttttcttcccaagaaagggt
gatagaaagatgtgtttagatggtgcgttgtttgagccagctgtggtggt
gcacaggtgcaatcagcagcaactgggagacagaggcgggcagatctgtg
agttaccccttggctgtgtcgttccaggacggccagagctaatagagatg
ctctgtctcaaatagaatggaatgggatagaatagaacagaacagaacag
aacagaacagaacagaacagaacagaacagaacagagtaggaaaaaaaga
aaagaaaggtacattgttttaattcgaacccatgtctaaaggctaaagaa
tctgttttaggcacgttagattataatttcactatactttacatgatttg
tcacttttcttcggcatttaaaaaagcccataattcctcaatttgagggc
atagttaatttcagacttctataactgaaacttttggggaaaaataattt
ctgaatacccttggtataacatctttattctttagtcacccaaaggagac
ccagaacctaagaagtataaaattaaagctgtttaacagaaataagcagg
ggattcaatgtttttgtaatttgaatatttaagttacccactgaccaaaa
tgaatgacatcattctgaaaatagtttgaaagtcccagaatactctgtga
caggtttagaagccataccgtcatcaggctattttacgtgcctagtttta
cctttaatatccggtatacatgaccagagtgacttaggaaccacccatta
ggtacttttaatttaaatttacacccttaataggtataataacgaattat
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_104800068_104800361
seq2: B6Ng01-282K02.b_61_354

seq1  TTTTTTTTTTTTTTTTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTGTA  50
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTGGTTTTTTCCAAACAGGGTTTCTCTGTGTA  50

seq1  GCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTTGAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTTGAACTC  100

seq1  AGAAATCCGCCTGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGCGTGCAC  150
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCCCCTGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGCGTGCAC  150

seq1  CACCATGCCCGGCTCCAGTTGAATTCTTAACAAAAATTATTTATCAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCCCGGCTCCAGTTGAATTCTTAACAAAAATTATTTATCAATTA  200

seq1  TCTATCTACCTATTAATCATCTATCACCTATCTCTTTATGTACTTACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTACCTATTAATCATCTATCACCTATCTCTTTATGTACTTACCAT  250

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATATGTG  294
      |||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATGTG  294

seq1: chr13_104940722_104941822
seq2: B6Ng01-282K02.g_66_1166 (reverse)

seq1  AATAATCCTTTATTATACCTATT-AGGGTGTAATTTTTAAAATTAAAGTA  49
      |||||| | |||||||||||||| |||||||||  |||||| | ||||||
seq2  AATAATTCGTTATTATACCTATTAAGGGTGTAA-ATTTAAATTAAAAGTA  49

seq1  ACTTATGTGTGGT--CTTAGTCACTTCTGGGTTCATGTTATA-CGGATAT  96
       || ||| |||||  || |||||| |||||  ||||| |||| |||||||
seq2  CCTAATGGGTGGTTCCTAAGTCAC-TCTGG--TCATG-TATACCGGATAT  95

seq1  TTAAGGTTAAAACTAGGGCACGT-AAATAGCCTGATGACGGTATGGCTTC  145
      | |||| |||||||| ||||||| ||||||||||||||||||||||||||
seq2  TAAAGG-TAAAACTA-GGCACGTAAAATAGCCTGATGACGGTATGGCTTC  143

seq1  TAAACCTGTCACAGAGTATTCTTGGACTTTC-AACTA-TTTCAGAATGAT  193
      |||||||||||||||||||||| |||||||| ||||| ||||||||||||
seq2  TAAACCTGTCACAGAGTATTCTGGGACTTTCAAACTATTTTCAGAATGAT  193

seq1  GTCATTCATTTTGGTCAGTGGGTAACTTAAATATTCAATTTACAAAAACA  243
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCATTCATTTTGGTCAGTGGGTAACTTAAATATTCAAATTACAAAAACA  243

seq1  TTGAATCCCCTGCTTATTTCTGTTAAACAGCTTTAATTTTATACTTCTTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCCCCTGCTTATTTCTGTTAAACAGCTTTAATTTTATACTTCTTA  293

seq1  GGTTCTGGGTCTCCTTTGGGTGACTAAAGAATAAAGATGTTATACCAAGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGGTCTCCTTTGGGTGACTAAAGAATAAAGATGTTATACCAAGG  343

seq1  GTATTCAGAAATTATTTTTCCCCAAAAGTTTCAGTTATAGAAGTCTGAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGAAATTATTTTTCCCCAAAAGTTTCAGTTATAGAAGTCTGAAA  393

seq1  TTAACTATGCCCTCAAATTGAGGAATTATGGGCTTTTTTAAATGCCGAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATGCCCTCAAATTGAGGAATTATGGGCTTTTTTAAATGCCGAAG  443

seq1  AAAAGTGACAAATCATGTAAAGTATAGTGAAATTATAATCTAACGTGCCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGACAAATCATGTAAAGTATAGTGAAATTATAATCTAACGTGCCT  493

seq1  AAAACAGATTCTTTAGCCTTTAGACATGGGTTCGAATTAAAACAATGTAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATTCTTTAGCCTTTAGACATGGGTTCGAATTAAAACAATGTAC  543

seq1  CTTTCTTTTCTTTTTTTCCTACTCTGTTCTGTTCTGTTCTGTTCTGTTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTCTTTTTTTCCTACTCTGTTCTGTTCTGTTCTGTTCTGTTCT  593

seq1  GTTCTGTTCTGTTCTGTTCTGTTCTATTCTATCCCATTCCATTCTATTTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTCTGTTCTGTTCTGTTCTATTCTATCCCATTCCATTCTATTTG  643

seq1  AGACAGAGCATCTCTATTAGCTCTGGCCGTCCTGGAACGACACAGCCAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGCATCTCTATTAGCTCTGGCCGTCCTGGAACGACACAGCCAAG  693

seq1  GGGTAACTCACAGATCTGCCCGCCTCTGTCTCCCAGTTGCTGCTGATTGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACTCACAGATCTGCCCGCCTCTGTCTCCCAGTTGCTGCTGATTGC  743

seq1  ACCTGTGCACCACCACAGCTGGCTCAAACAACGCACCATCTAAACACATC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCACCACCACAGCTGGCTCAAACAACGCACCATCTAAACACATC  793

seq1  TTTCTATCACCCTTTCTTGGGAAGAAAAGTGAATATATCCCATAAATCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCACCCTTTCTTGGGAAGAAAAGTGAATATATCCCATAAATCCA  843

seq1  TTGCTCTTAAAGTAACCAAAGCCCACACTTCAATTTTTAAAATGCATTTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTAAAGTAACCAAAGCCCACACTTCAATTTTTAAAATGCATTTC  893

seq1  TCTGTATAACATGATGAACAGCTTAGATAAAATGAAAGGAAAGCAGCATA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAACATGATGAACAGCTTAGATAAAATGAAAGGAAAGCAGCATA  943

seq1  ATGGAAAATCAAGTTAGTCTGAACAGTTAGTACCAAGTCATTTAACGTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATCAAGTTAGTCTGAACAGTTAGTACCAAGTCATTTAACGTCT  993

seq1  GGAAAATGAGGACAAGGCTTTAGTGCTGAGGCTGCTGAGGCTGTTATACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGAGGACAAGGCTTTAGTGCTGAGGCTGCTGAGGCTGTTATACA  1043

seq1  CAGGGAAATAATAAGCAAACACTGCTTATTGTAAACAGAAGGTGGAAAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAATAATAAGCAAACACTGCTTATTGTAAACAGAAGGTGGAAAAT  1093

seq1  ATGAATTC  1101
      ||||||||
seq2  ATGAATTC  1101