BAC Information

Click to search

BAC

Clone NameB6Ng01-284C22
Chromosome13 (Build37)
Map Location 85,390,812 - 85,489,058
singlet/doubletdoublet
Overlap geneRasa1
Upstream geneTmem161b, LOC666795, LOC667111, LOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh
Downstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284C22.bB6Ng01-284C22.g
ACCGA082950GA082951
length1,1241,100
definitionB6Ng01-284C22.b B6Ng01-284C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,390,812 - 85,391,946)(85,487,947 - 85,489,058)
sequence
gaattctagtcctaacagtttatacagagttttcaatgaacagataatga
aagaaaaaaaaaaagtatacaaggacttctcttaattagggcctcactaa
gtatttaaaaagactaaaatcaaacattcaatgagtgcataattcaaatt
agtgtataataggcaaaaggaagtctaacataaacaaaatctaaaaattt
ataggaaaactaacatatttataagatgcttgaatctgattgttcctgtc
tgtatacctcttccaatgtagaattcggaatgctatttaaagaactggaa
gttataatcctagatcttgcattatgtttgtgactatgaatacaggatat
atcacataatttccataactccttccaactttcctcagtatgttttatgc
atgtgaatcaagatctagttgtcagaataagcagacaaaacaattagcag
caaaacaaattactctaccatcttccacacagggcatacatagttctggg
gttccataaaagatcacagaaagccattctattctaccacacaaatctaa
gaggaaaatgtaaattccaaaattataatgtttaatacattttggtggtg
ttgaatattgtctgtaaagcatgaacattgcttgagtgctaatttgtact
aatttgctaaatatattgatgatttaaattatgtactaagataaataata
atgtatgatagcaaagaaaacaaaggggaatattcaaactgtagaacttt
ggggttatatatgaataatacaattaaaaatttctaagattattagaatt
atacacatatttgaaaaattataccaaacatacaactatttaaaattctg
agtcagatatacctaatgaagaaagaagcacaaaaaaattatcgaaataa
gtacaagtgatagaaatattgaagtactttgtgcaaaggcagatatgtat
tataacatactaacatactttattttctttacaataatcatttatacacc
aaatacaccttaaatttctttgcattgatgattaagcatttgacagagaa
attattttctgtctatgactcagaaaacgaccttctaaccttttataaaa
gaacttggatctgatgtaatgagt

gaattccaggtacagaacaggatgatttgatttggataacttagtgccaa
tttaaaactttcttaattatacccttagcaagatgtagcaaccatatttg
ccagttttgcttgtgatcacctctgtatttaattagaaatggaatcacat
ctttattgattggtatctcttacagcagtacagagatcatcaggaaggat
cactcatactggtgacacattcactgaatgccctgaaagatactgaacga
tgtccaactatggaatgctgtggttggaatggattttcaaaattcatgtc
tggggaacctaatttccaaccaaggtgtttcagaggtaatgctttttgag
tgttgttttggacatgagaactgagttttggttaaaaaaaaaaaaaaaga
tttaacactattaccaagggtttgttggagagagtttaactctttctatc
catcccccttctccttttctagtatacaagaagagatcctcactggagaa
ctgacccttaatttctgacatcataacttccaatctgaaaaataaacttt
tatactttataaatggcccagatgttctcagacacactctagtaagaact
ctccaccagttactaaattccatagaatggctttttggttggatatataa
cagagtcaaccataaaatgtatcacctcctaactccagggcaaatcctaa
caagcttggcttgcctgtgcctgccttctactcttgtagattagtgagtt
ataaataaagtaaaactttgtctcctcaccccacctccactaaaagcaag
aatcatactgaataaaacaccatagcctgcttatgcaatgaagaacattt
accttggaatcagagactaaggtttgaatagctaattaactctaaattca
aacataatagctagggaggagaaatcacacaacataatatgtttcctgtc
tagaaatggaggataattattcttttccttctggactgtaatggagagta
agtgatatatttagggttagtgagacagacaaaatactgctatatttttt
tcattaaggttcatgattgctaactctttctcctaatcttcgaaaataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_85390812_85391946
seq2: B6Ng01-284C22.b_43_1166

seq1  GAATTCTAGTCCTAACAGTTTATACAGAGTTTTCAATGAACAGATAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTCCTAACAGTTTATACAGAGTTTTCAATGAACAGATAATGA  50

seq1  AAGAAAAAAAAAAAGTATACAAGGACTTCTCTTAATTAGGGCCTCACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAAAAAGTATACAAGGACTTCTCTTAATTAGGGCCTCACTAA  100

seq1  GTATTTAAAAAGACTAAAATCAAACATTCAATGAGTGCATAATTCAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAAAAGACTAAAATCAAACATTCAATGAGTGCATAATTCAAATT  150

seq1  AGTGTATAATAGGCAAAAGGAAGTCTAACATAAACAAAATCTAAAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATAATAGGCAAAAGGAAGTCTAACATAAACAAAATCTAAAAATTT  200

seq1  ATAGGAAAACTAACATATTTATAAGATGCTTGAATCTGATTGTTCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAACTAACATATTTATAAGATGCTTGAATCTGATTGTTCCTGTC  250

seq1  TGTATACCTCTTCCAATGTAGAATTCGGAATGCTATTTAAAGAACTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACCTCTTCCAATGTAGAATTCGGAATGCTATTTAAAGAACTGGAA  300

seq1  GTTATAATCCTAGATCTTGCATTATGTTTGTGACTATGAATACAGGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATCCTAGATCTTGCATTATGTTTGTGACTATGAATACAGGATAT  350

seq1  ATCACATAATTTCCATAACTCCTTCCAACTTTCCTCAGTATGTTTTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATAATTTCCATAACTCCTTCCAACTTTCCTCAGTATGTTTTATGC  400

seq1  ATGTGAATCAAGATCTAGTTGTCAGAATAAGCAGACAAAACAATTAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATCAAGATCTAGTTGTCAGAATAAGCAGACAAAACAATTAGCAG  450

seq1  CAAAACAAATTACTCTACCATCTTCCACACAGGGCATACATAGTTCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAATTACTCTACCATCTTCCACACAGGGCATACATAGTTCTGGG  500

seq1  GTTCCATAAAAGATCACAGAAAGCCATTCTATTCTACCACACAAATCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATAAAAGATCACAGAAAGCCATTCTATTCTACCACACAAATCTAA  550

seq1  GAGGAAAATGTAAATTCCAAAATTATAATGTTTAATACATTTTGGTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATGTAAATTCCAAAATTATAATGTTTAATACATTTTGGTGGTG  600

seq1  TTGAATATTGTCTGTAAAGCATGAACATTGCTTGAGTGCTAATTTGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATTGTCTGTAAAGCATGAACATTGCTTGAGTGCTAATTTGTACT  650

seq1  AATTTGCTAAATATATTGATGATTTAAATTATGTACTAAGATAAATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTAAATATATTGATGATTTAAATTATGTACTAAGATAAATAATA  700

seq1  ATGTATGATAGCAAAGAAAACAAAGGGGAATATTCAAACTGTAGAACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGATAGCAAAGAAAACAAAGGGGAATATTCAAACTGTAGAACTTT  750

seq1  GGGGTTATATATGAATAATACAATTAAAAATTTCTAAGATTATTAGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTATATATGAATAATACAATTAAAAATTTCTAAGATTATTAGAATT  800

seq1  ATACACATATTTGAAAAATTATACCAAACATACAACTATTTAAAATTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATATTTGAAAAATTATACCAAACATACAACTATTTAAAATTCTG  850

seq1  AGTCAGATATACCTAATGAAGAAAAGAAGCACAAAAAAATTATCGAAATA  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTCAGATATACCTAATGAAG-AAAGAAGCACAAAAAAATTATCGAAATA  899

seq1  AGTACAAGTGATAGAAATATTGAAGTACTTTGTGCAAAGGCAGATATGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGTGATAGAAATATTGAAGTACTTTGTGCAAAGGCAGATATGTA  949

seq1  TTATAACATACTAACATACTTTA-TTTCTTTACAAATAATCATTTATTAA  999
      ||||||||||||||||||||||| ||||||||| |||||||||||||  |
seq2  TTATAACATACTAACATACTTTATTTTCTTTAC-AATAATCATTTAT--A  996

seq1  CACCAAATACACCTTAAAATTTCTTTGCATTTGATGAATTTAAGCATTTG  1049
      ||||||||||||||| ||||||||||||| |||||||  |||||||||||
seq2  CACCAAATACACCTT-AAATTTCTTTGCA-TTGATGA--TTAAGCATTTG  1042

seq1  ACAAGAGAAAATTATTTCTGTCTAATGACCCAGAAAACAGACTTCTAAAC  1099
      || ||||||| |  ||||||||| ||||| ||||||||   ||||||| |
seq2  AC-AGAGAAATTATTTTCTGTCT-ATGACTCAGAAAACGACCTTCTAACC  1090

seq1  TTTTAT-AAAGAACTTGGGATCTAAATGTAAATGAGT  1135
      |||||| ||||||||| ||||||  |||| |||||||
seq2  TTTTATAAAAGAACTT-GGATCT-GATGT-AATGAGT  1124


seq1: chr13_85487947_85489058
seq2: B6Ng01-284C22.g_64_1163 (reverse)

seq1  ATTATTTTAGAAGATTAGAGAAGAAAAGAGTTAGGCAATCATGAAATTTT  50
      |||||||| ||||||||| ||   ||||||||| ||||||||| ||  ||
seq2  ATTATTTTCGAAGATTAG-GA--GAAAGAGTTA-GCAATCATG-AACCTT  45

seq1  AATGAAAAAAATAATTAAGGCAGTATTTTGTCTGTCTCAACTAACCTAAA  100
      |||||||||||||  ||  ||||||||||||||||||| |||||||  ||
seq2  AATGAAAAAAATA--TA--GCAGTATTTTGTCTGTCTC-ACTAACCCTAA  90

seq1  ATATTAATTCAACTTAACTCT-CATTACAGTCCAGAAGG-AAAGAATAAT  148
      ||||  ||   |||| ||||| ||||||||||||||||| ||||||||||
seq2  ATAT--AT--CACTT-ACTCTCCATTACAGTCCAGAAGGAAAAGAATAAT  135

seq1  TATCCTTCATTTCTAAGACAGGAAACATATTATGTTGTGTGATTTCTC--  196
      |||||| ||||||| |||||||||||||||||||||||||||||||||  
seq2  TATCCTCCATTTCT-AGACAGGAAACATATTATGTTGTGTGATTTCTCCT  184

seq1  TCCTAGCTATTATGTTTGAATTTAGAGTTAATTAGCTATTCAAACCTTAG  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCTATTATGTTTGAATTTAGAGTTAATTAGCTATTCAAACCTTAG  234

seq1  TCTCTGATTCCAAGGTAAATGTTCTTCATTGCATAAGCAGGCTATGGTGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATTCCAAGGTAAATGTTCTTCATTGCATAAGCAGGCTATGGTGT  284

seq1  TTTATTCAGTATGATTCTTGCTTTTAGTGGAGGTGGGGTGAGGAGACAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGTATGATTCTTGCTTTTAGTGGAGGTGGGGTGAGGAGACAAA  334

seq1  GTTTTACTTTATTTATAACTCACTAATCTACAAGAGTAGAAGGCAGGCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTTTATTTATAACTCACTAATCTACAAGAGTAGAAGGCAGGCAC  384

seq1  AGGCAAGCCAAGCTTGTTAGGATTTGCCCTGGAGTTAGGAGGTGATACAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCCAAGCTTGTTAGGATTTGCCCTGGAGTTAGGAGGTGATACAT  434

seq1  TTTATGGTTGACTCTGTTATATATCCAACCAAAAAGCCATTCTATGGAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTTGACTCTGTTATATATCCAACCAAAAAGCCATTCTATGGAAT  484

seq1  TTAGTAACTGGTGGAGAGTTCTTACTAGAGTGTGTCTGAGAACATCTGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAACTGGTGGAGAGTTCTTACTAGAGTGTGTCTGAGAACATCTGGG  534

seq1  CCATTTATAAAGTATAAAAGTTTATTTTTCAGATTGGAAGTTATGATGTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATAAAGTATAAAAGTTTATTTTTCAGATTGGAAGTTATGATGTC  584

seq1  AGAAATTAAGGGTCAGTTCTCCAGTGAGGATCTCTTCTTGTATACTAGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAAGGGTCAGTTCTCCAGTGAGGATCTCTTCTTGTATACTAGAA  634

seq1  AAGGAGAAGGGGGATGGATAGAAAGAGTTAAACTCTCTCCAACAAACCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGGGGGATGGATAGAAAGAGTTAAACTCTCTCCAACAAACCCT  684

seq1  TGGTAATAGTGTTAAATCTTTTTTTTTTTTTTTAACCAAAACTCAGTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATAGTGTTAAATCTTTTTTTTTTTTTTTAACCAAAACTCAGTTCT  734

seq1  CATGTCCAAAACAACACTCAAAAAGCATTACCTCTGAAACACCTTGGTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCAAAACAACACTCAAAAAGCATTACCTCTGAAACACCTTGGTTG  784

seq1  GAAATTAGGTTCCCCAGACATGAATTTTGAAAATCCATTCCAACCACAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGGTTCCCCAGACATGAATTTTGAAAATCCATTCCAACCACAGC  834

seq1  ATTCCATAGTTGGACATCGTTCAGTATCTTTCAGGGCATTCAGTGAATGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATAGTTGGACATCGTTCAGTATCTTTCAGGGCATTCAGTGAATGT  884

seq1  GTCACCAGTATGAGTGATCCTTCCTGATGATCTCTGTACTGCTGTAAGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAGTATGAGTGATCCTTCCTGATGATCTCTGTACTGCTGTAAGAG  934

seq1  ATACCAATCAATAAAGATGTGATTCCATTTCTAATTAAATACAGAGGTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAATCAATAAAGATGTGATTCCATTTCTAATTAAATACAGAGGTGA  984

seq1  TCACAAGCAAAACTGGCAAATATGGTTGCTACATCTTGCTAAGGGTATAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGCAAAACTGGCAAATATGGTTGCTACATCTTGCTAAGGGTATAA  1034

seq1  TTAAGAAAGTTTTAAATTGGCACTAAGTTATCCAAATCAAATCATCCTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAGTTTTAAATTGGCACTAAGTTATCCAAATCAAATCATCCTGT  1084

seq1  TCTGTACCTGGAATTC  1112
      ||||||||||||||||
seq2  TCTGTACCTGGAATTC  1100


| Home | SequenceCutter | Blast | Download |