BAC Information

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BAC

Clone NameB6Ng01-285H21
Chromosome13 (Build37)
Map Location 17,726,304 - 17,727,366
singlet/doubletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285H21.bB6Ng01-285H21.g
ACCGA083929GA083930
length1,1871,087
definitionB6Ng01-285H21.b B6Ng01-285H21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacataaaaccagagacactgaaagttattgaggagaaagtagg
gcaaaccctcgaagatattggtacaagggaaaaattcctgaatagaacag
taatggcttgtgctgtaaggtcgagaatcaacaaatgggacctcatgaaa
ctgcaaagcttctgcaaggcaaaagacaccatcaataaaacaaaaaggcc
accaacagattggggaaggatctttacctatcctaaatcagataggggac
taatatccaatatatataaagaactcaagaagctggactccagaaaatca
aataaccccattagaaaatggggctcagagctaataaaagaattctcacc
tgaggaatacagaatggctgagaagcacctgaaaaaatgttcagcatcct
taatcatcagagaaatgcaaaccaaaacaaccctgagattccacctcaca
ccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcg
agaatgtggagaaagaggaacactcctccattgttggtgggattgcaagc
ttgtacaaccactctggaaatcagtctggcggttcctcagaaaactggat
atagtactaccggaggatcctgcagtacatctcctgggcatatatccaga
agatgttccaactggtaagaaggacacatgctccactatgtccatagcag
ccgtatttataatagcagccttatttataatagccagaagctggaaagaa
cccagatgcccctcaacagaggaatggatacagaaaatgtggtacattta
cacaatggagtactactcagctattaaaaagaatgaatttatgaaattcc
taggcaaatggatggacctggagggcatcatcctgagtgaggtaacccaa
taacaaggaactcacacaatatgtactcactgataagtggatattagccc
agaaacttagatacccaagattatagatacactttgctaacacatgaaac
tcaaggagacgagaccaaagtgtgacactttgcccttctagaatttggga
acaaacacccatggaggagttacagaagacaagctgagctgttgacaaag
aatgacatctagagctgcatatcaaggttccattcatattcagctccaac
gctgaacatcattgcattatcctagcaagaaattgta

gaattctccacactggtatcctgagtggctgctccagtttttaatcccac
cagcagtgacagagttttctcctttctcccacatctcttccaggatttgt
tttcacgattttaactattgcaactggcgtaagatgaaatctcaaagttg
tttttatctttcacttctcactcattcattcatgatccagttcttccctg
ctgttagctgctatttgtgatttctttggagtcagacccctttggagaaa
acatgtcatctatgggtatcaaaaccaaaacaaagctgcccctcttgcaa
caaacaaaacaaaacaaactaggaagccagtttttgaccagctatgcttt
cagaaggtctctgtgtttctgagctctgctgctggccctgtgtgtagcgg
gagcacttacatgctataaatgctataaattgcagttctttggatgctcc
tggctttttgtgatcatatatacacaaggtatactgctaaaatcccctgg
tgttataggtgatctttcatgggtacagttccttttaacataaactatta
atgttttcctgatggttcatttggctcaggagtgccatttattttatttt
tcggttacttctgctgcttttagctgatctaaacattacctctatgatac
tgttttgaagtcaccattatatggtcctatggtggactgagtggactgtc
cttcctctatgtaagatggactaccttggactctttataaaagaagtgcc
tcctaaatatcttatagcctcctaccttttcctttgagtattcttcagtg
catgaaaacctatggataatgaaccactttcataatattttagtattttc
tgctttggtcttccaacatgtaggggggtctaaagctttagttgaactac
ctgaggacccagcaaataaccacttcctgggaaatatactcagaagaatg
ctccaacatgtaataaaggacatcatgctccaactattttccatcacagc
cttattttataatagcctaggaagctgggaaaggaacccagcttgttccc
tcaaattgaagtaataagataccagaaaatgtggtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_17726304_17727366
seq2: B6Ng01-285H21.g_69_1155 (reverse)

seq1  GTACCACATTTTCT-GTATC-TATTCCT--CATTTGAGGG-ACAA-CTGG  44
      |||||||||||||| ||||| |||| ||   ||||||||| |||| ||||
seq2  GTACCACATTTTCTGGTATCTTATTACTTCAATTTGAGGGAACAAGCTGG  50

seq1  GTTC--TTTCCAGCTTC--TGGCTATTAT-AAATAAGGCTGTGAT-GAAA  88
      ||||  || ||||||||   ||||||||| ||||||||||||||| ||||
seq2  GTTCCTTTCCCAGCTTCCTAGGCTATTATAAAATAAGGCTGTGATGGAAA  100

seq1  ATAG-TGGAGCATG-TGTCC-TTATTACATGTTGGAGCA-TCTTCTGAGT  134
      |||| ||||||||| ||||| |||||||||||||||||| ||||||||||
seq2  ATAGTTGGAGCATGATGTCCTTTATTACATGTTGGAGCATTCTTCTGAGT  150

seq1  ATA-TTCCCAGG-AGTGGT--ATTGCTGGGTCCTCAGGTAGTTCAACTAA  180
      ||| |||||||| ||||||   ||||||||||||||||||||||||||||
seq2  ATATTTCCCAGGAAGTGGTTATTTGCTGGGTCCTCAGGTAGTTCAACTAA  200

seq1  AGCTTTAGA-CCCCCTACATGTTGGAAGACCAAAGCAGAAAATACTAAAA  229
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGACCCCCCTACATGTTGGAAGACCAAAGCAGAAAATACTAAAA  250

seq1  TATTATGAAAGTGGTTCATTATCCATAGGTTTTCATGCACTGAAGAATAC  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGAAAGTGGTTCATTATCCATAGGTTTTCATGCACTGAAGAATAC  300

seq1  TCAA--GGAAAGGTAGGAGGCTATAAGATATTTAGGAGGCACTTC-TTTA  326
      ||||  | ||||||||||||||||||||||||||||||||||||| ||||
seq2  TCAAAGGAAAAGGTAGGAGGCTATAAGATATTTAGGAGGCACTTCTTTTA  350

seq1  TAAAGAGTCCAAGGTAGTCCATCTTACATAGAGGAAGGACAGTCCACTCA  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTCCAAGGTAGTCCATCTTACATAGAGGAAGGACAGTCCACTCA  400

seq1  GTCCACCATAGGACCATATAATGGTGACTTCAAAACAGTATCATAGAGGT  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCATAGGACCATATAATGGTGACTTCAAAACAGTATCATAGAGGT  450

seq1  AATGTTTAGATCAGCTAAAAGCAGCAGAAGTAACCGAAAAATAAAATAAA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAGATCAGCTAAAAGCAGCAGAAGTAACCGAAAAATAAAATAAA  500

seq1  TGGCACTCCTGAGCCAAATGAACCATCAGGAAAACATTAATAGTTTATGT  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTCCTGAGCCAAATGAACCATCAGGAAAACATTAATAGTTTATGT  550

seq1  TAAAAGGAACTGTACCCATGAAAGATCACCTATAACACCAGGGGATTTTA  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAACTGTACCCATGAAAGATCACCTATAACACCAGGGGATTTTA  600

seq1  GCAGTATACCTTGTGTATATATGATCACAAAAAGCCAGGAGCATCCAAAG  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATACCTTGTGTATATATGATCACAAAAAGCCAGGAGCATCCAAAG  650

seq1  AACTGCAATTTATAGCATTTATAGCATGTAAGTGCTCCCGCTACACACAG  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAATTTATAGCATTTATAGCATGTAAGTGCTCCCGCTACACACAG  700

seq1  GGCCAGCAGCAGAGCTCAGAAACACAGAGACCTTCTGAAAGCATAGCTGG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAGCAGAGCTCAGAAACACAGAGACCTTCTGAAAGCATAGCTGG  750

seq1  TCAAAAACTGGCTTCCTAGTTTGTTTTGTTTTGTTTGTTGCAAGAGGGGC  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACTGGCTTCCTAGTTTGTTTTGTTTTGTTTGTTGCAAGAGGGGC  800

seq1  AGCTTTGTTTTGGTTTTGATACCCATAGATGACATGTTTTCTCCAAAGGG  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTTTTGGTTTTGATACCCATAGATGACATGTTTTCTCCAAAGGG  850

seq1  GTCTGACTCCAAAGAAATCACAAATAGCAGCTAACAGCAGGGAAGAACTG  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACTCCAAAGAAATCACAAATAGCAGCTAACAGCAGGGAAGAACTG  900

seq1  GATCATGAATGAATGAGTGAGAAGTGAAAGATAAAAACAACTTTGAGATT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGAATGAATGAGTGAGAAGTGAAAGATAAAAACAACTTTGAGATT  950

seq1  TCATCTTACGCCAGTTGCAATAGTTAAAATCGTGAAAACAAATCCTGGAA  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTACGCCAGTTGCAATAGTTAAAATCGTGAAAACAAATCCTGGAA  1000

seq1  GAGATGTGGGAGAAAGGAGAAAACTCTGTCACTGCTGGTGGGATTAAAAA  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGGGAGAAAGGAGAAAACTCTGTCACTGCTGGTGGGATTAAAAA  1050

seq1  CTGGAGCAGCCACTCAGGATACCAGTGTGGAGAATTC  1063
      |||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAGCCACTCAGGATACCAGTGTGGAGAATTC  1087


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