BAC Information

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BAC

Clone NameB6Ng01-288F22
Chromosome13 (Build37)
Map Location 11,366,299 - 11,484,765
singlet/doubletdoublet
Overlap geneLOC100039648
Upstream genenone
Downstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288F22.bB6Ng01-288F22.g
ACCGA086048GA086049
length1,1501,147
definitionB6Ng01-288F22.b B6Ng01-288F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,366,299 - 11,367,461)(11,483,600 - 11,484,765)
sequence
gaattcatttgctaagtttattcatttgctgtcttttccaggaatctagg
ggtcaaggtcataaaatgctgatttgtggataaccaaagaggaacctggg
gtaatgcttcaattgatatgcaaatgaaagactgggttttggtctgtaag
agctgagctatctagaggagctgctggagagcaatcgagcagaagacaga
gttgtcagtttttacctatcactgacttccagccattcttctacctcttc
cagacactctttcttcaccccaccccccaaatggaggctggttcttggca
accaaaggccaaggttttgatcctttagacacctccccacaaaagggtct
tggttatatagaactgctactctacataatatataaactagaaggaaaga
agggggaaagcaaacactgagagcaaacactttgcacttcctgccaaact
ctgtgactccatgatcctactcttttgaaaggctactctgtttctcttag
ggcacaccacagtgagatatactgagttggggtctgatcaaacccattct
tgataatcataaaaaattaagatcaagtgactagggagttggtagaacac
tggcttagcaaatatgaaatcctgggtttgtttcaaagcattaattgggt
attttggtgcatgcctataatcctaacacagcactccgcagttggaatca
ataggatccaaacttcaaggacaagtatacagtaactatacagtaaatct
aaagacagcctaggccccacgaagccttttcttaagcaggaataacaacc
acatgaaaatgaggaaaggtcacagatttcaaacattgttagtgaatacg
ggggcccatcactgcttaatgatacctcactgaggaagaagtaccctgga
gtttagaaaggaaaatccttggacagtacttcttgcctacgaatagctgt
tatgtcctacttacagtatgaaaacacctaaaggacactgtatgaaggag
caagagtcaggccaagacgctcaagaacagtcttcataagccccatctac
aggagtcagatcagtatacataaaaacataatgataatctgggtgtatat
tgtcttccgggaatgctgcctatacttggcagccaggtccaggcttaaca


gaattctttcatatcatccagtagcagtcagcaacacagcacaaggaaga
aacgttatatttttttcccttccctggaaagacttcacatgtactcttca
atatgaatttaaaacaaacagcagttacaatttatttttcaacccacaga
ggagcgcctttgattgtgggtctttatgagcttgttaagttcctttgttt
ggctttaatttgagaatcagcaggatacaatagtcgtgtcagatgcagaa
tcttgtcttgtcactcagctgtcagtaattggaagctattttcacattag
taagaggaaccatagatttctgcctaaataccatattagggttttgctct
gtgtttatgtgacattgtgaagttattggttggcatttgtgctagtctcc
tgattgcagtttcaaattccatagaagaaacttaaggcttccatagaaga
agagatcattttagtgtcttagattatctcctaattgctttaagaaaaat
ctgttaatattaacacccttatgttgagattaagtaagaatacatgttat
ggaacttggaggtcacatcctgttttccatgccaggttctaccatccata
cttcataagccaattaaaagcatccaattaaaaggaaaaagcagagaaaa
gagttttattcaatatggctacattaggaagaaagacaaaaggccaccta
agcggggctggaacagtggctcagtggttctgctcttgctgaagacattt
gctgttgattcttaaggctggaaatcccttaggcccatatatttataaat
tgggaagcttagtttggtggggtctcggcctaatggcacccttcccttta
tccattttggatcaggttctcatctacagtgcgcgtaagctatagtgcaa
tgtgttactagcctgacaaactacgcttactcagcatggcttatttgcca
gctaaacaaattcagtgtggaaaatcttatgagaagtcttcttctttttt
tgtctagaagatcccagtttggctttattcaatatattattatgctctgt
taaggctagtggtaaggatccagcctccctctatcaatgattaatgactt
aattatcaggccctagattgtagtaggcatctactaatggactgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_11366299_11367461
seq2: B6Ng01-288F22.b_47_1196

seq1  GAATTCATTTGCTAAGTTTATTCATTTGCTGTCTTTTCCAGGAATCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCTAAGTTTATTCATTTGCTGTCTTTTCCAGGAATCTAGG  50

seq1  GGTCAAGGTCATAAAATGCTGATTTGTGGATAACCAAAGAGGAACCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGGTCATAAAATGCTGATTTGTGGATAACCAAAGAGGAACCTGGG  100

seq1  GTAATGCTTCAATTGATATGCAAATGAAAGACTGGGTTTTGGTCTGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCTTCAATTGATATGCAAATGAAAGACTGGGTTTTGGTCTGTAAG  150

seq1  AGCTGAGCTATCTAGAGGAGCTGCTGGAGAGCAATCGAGCAGAAGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGCTATCTAGAGGAGCTGCTGGAGAGCAATCGAGCAGAAGACAGA  200

seq1  GTTGTCAGTTTTTACCTATCACTGACTTCCAGCCATTCTTCTACCTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGTTTTTACCTATCACTGACTTCCAGCCATTCTTCTACCTCTTC  250

seq1  CAGACACTCTTTCTTCACCCCACCCCCCAAATGGAGGCTGGTTCTTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTCTTTCTTCACCCCACCCCCCAAATGGAGGCTGGTTCTTGGCA  300

seq1  ACCAAAGGCCAAGGTTTTGATCCTTTAGACACCTCCCCACAAAAGGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGCCAAGGTTTTGATCCTTTAGACACCTCCCCACAAAAGGGTCT  350

seq1  TGGTTATATAGAACTGCTACTCTACATAATATATAAACTAGAAGGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATATAGAACTGCTACTCTACATAATATATAAACTAGAAGGAAAGA  400

seq1  AGGGGGAAAGCAAACACTGAGAGCAAACACTTTGCACTTCCTGCCAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAAGCAAACACTGAGAGCAAACACTTTGCACTTCCTGCCAAACT  450

seq1  CTGTGACTCCATGATCCTACTCTTTTGAAAGGCTACTCTGTTTCTCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTCCATGATCCTACTCTTTTGAAAGGCTACTCTGTTTCTCTTAG  500

seq1  GGCACACCACAGTGAGATATACTGAGTTGGGGTCTGATCAAACCCATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACCACAGTGAGATATACTGAGTTGGGGTCTGATCAAACCCATTCT  550

seq1  TGATAATCATAAAAAATTAAGATCAAGTGACTAGGGAGTTGGTAGAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATCATAAAAAATTAAGATCAAGTGACTAGGGAGTTGGTAGAACAC  600

seq1  TGGCTTAGCAAATATGAAATCCTGGGTTTGTTTCAAAGCATTAATTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGCAAATATGAAATCCTGGGTTTGTTTCAAAGCATTAATTGGGT  650

seq1  ATTTTGGTGCATGCCTATAATCCTAACACAGCACTCCGCAGTTGGAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTGCATGCCTATAATCCTAACACAGCACTCCGCAGTTGGAATCA  700

seq1  ATAGGATCCAAACTTCAAGGACAAGTATACAGTAACTATACAGTAAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCCAAACTTCAAGGACAAGTATACAGTAACTATACAGTAAATCT  750

seq1  AAAGACAGCCTAGGCCCCACGAAGCCTTTTCTTAAGCAGGAATAACAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGCCTAGGCCCCACGAAGCCTTTTCTTAAGCAGGAATAACAACC  800

seq1  ACATGAAAATGAGG-AAGGTCACAGATTTCAAACATTGTTAGTGAATACG  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACATGAAAATGAGGAAAGGTCACAGATTTCAAACATTGTTAGTGAATACG  850

seq1  GGGGCCCATCACTGCTTAATGATACCTCACTGAGGAAGAAGTACCCTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCCATCACTGCTTAATGATACCTCACTGAGGAAGAAGTACCCTGGA  900

seq1  GTTTAGAAAGGAAAATCCTTGGACAGTACTTCTTGCCTACGAATAGCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAAAGGAAAATCCTTGGACAGTACTTCTTGCCTACGAATAGCTGT  950

seq1  TATGTCCTACTTACAGTATGAAAACACCTAAAGGACACTGTTAATGAAGG  999
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TATGTCCTACTTACAGTATGAAAACACCTAAAGGACACTGT--ATGAAGG  998

seq1  AGCCAAGAGTTCAAGGCCAAAGAAGGCTCAAAGAACAGTCTTCATAAGCC  1049
      || |||||||   |||||||   | |||| ||||||||||||||||||||
seq2  AG-CAAGAGT--CAGGCCAA--GACGCTC-AAGAACAGTCTTCATAAGCC  1042

seq1  CCATCCTACAGGAGTCAGGATCAGTATTACATTAAAACATAATGATAATC  1099
      |||| |||||||||||| |||||||| ||||| |||||||||||||||||
seq2  CCAT-CTACAGGAGTCA-GATCAGTA-TACATAAAAACATAATGATAATC  1089

seq1  CTGGTGTATATTGTCTTCCCGGGATGCCTGCCTATACCTTGCAAGCAGGT  1149
        ||||||||||||||||| || ||| |||||||||| | |||  |||||
seq2  TGGGTGTATATTGTCTTCCGGGAATG-CTGCCTATACTTGGCAGCCAGGT  1138

seq1  CCAGCCTTTTAACA  1163
      |||| |  ||||||
seq2  CCAGGC--TTAACA  1150


seq1: chr13_11483600_11484765
seq2: B6Ng01-288F22.g_67_1213 (reverse)

seq1  TAACAGTCATTAAGTAGAATGCCTACTTCTAATCTTATGGCATTGAATAA  50
      ||||||||  | ||||| ||||||||| | |||| || ||| |   ||||
seq2  TAACAGTCCATTAGTAG-ATGCCTACTAC-AATC-TAGGGCCT--GATAA  45

seq1  TAAATGTCATTAGAATCAATGGATAGA-GGAGGCTGATTCCTAACCACTA  99
      | || ||||||  |||| || |||||| ||||||||  |||| |||||||
seq2  TTAA-GTCATT--AATC-ATTGATAGAGGGAGGCTGGATCCTTACCACTA  91

seq1  GCC-TAACAAGGAGCAATTATAAATATTATTTGAAATAAAGCAAACCTTG  148
      ||| |||||  |||||      |||| ||| |  |||||||| || || |
seq2  GCCTTAACA--GAGCA-----TAATAATATATTGAATAAAGCCAAACTGG  134

seq1  GATCTTTCTAAGACAAAAAAAAGAAGAAGACTTCTTCATAAGATTTTCCA  198
      |||| |||| |||| ||||||||||||||||||| |||||||||||||| 
seq2  GATC-TTCT-AGAC-AAAAAAAGAAGAAGACTTC-TCATAAGATTTTCC-  179

seq1  ACACTGAATTTGTTTAGCTGGCAAAT-AGCCATGCCTGAGTAAGCGTAGT  247
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  ACACTGAATTTGTTTAGCTGGCAAATAAGCCATG-CTGAGTAAGCGTAGT  228

seq1  TTGTCAGGCTAGTAAACACATTGCACTATAGCTTACGCGCACTGTAGATG  297
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGGCTAGT-AACACATTGCACTATAGCTTACGCGCACTGTAGATG  277

seq1  AGAACCTGATCCAAAATGGATAAAGGGAAGGGTGCCATTAGGCCGAGACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGATCCAAAATGGATAAAGGGAAGGGTGCCATTAGGCCGAGACC  327

seq1  CCACCAAACTAAGCTT-CCAATTTATAAATATATGGGCCTAAGGGATTTC  396
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCACCAAACTAAGCTTCCCAATTTATAAATATATGGGCCTAAGGGATTTC  377

seq1  CAGCCTTAAGAATCAACAGCAAATGTCTTCAGCAAGAGCAGAACCACTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTAAGAATCAACAGCAAATGTCTTCAGCAAGAGCAGAACCACTGA  427

seq1  GCCACTGTTCCAGCCCCGCTTAGGTGGCCTTTTGTCTTTCTTCCTAATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTTCCAGCCCCGCTTAGGTGGCCTTTTGTCTTTCTTCCTAATGT  477

seq1  AGCCATATTGAATAAAACTCTTTTCTCTGCTTTTTCCTTTTAATTGGATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATATTGAATAAAACTCTTTTCTCTGCTTTTTCCTTTTAATTGGATG  527

seq1  CTTTTAATTGGCTTATGAAGTATGGATGGTAGAACCTGGCATGGAAAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTGGCTTATGAAGTATGGATGGTAGAACCTGGCATGGAAAACA  577

seq1  GGATGTGACCTCCAAGTTCCATAACATGTATTCTTACTTAATCTCAACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGACCTCCAAGTTCCATAACATGTATTCTTACTTAATCTCAACAT  627

seq1  AAGGGTGTTAATATTAACAGATTTTTCTTAAAGCAATTAGGAGATAATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTTAATATTAACAGATTTTTCTTAAAGCAATTAGGAGATAATCT  677

seq1  AAGACACTAAAATGATCTCTTCTTCTATGGAAGCCTTAAGTTTCTTCTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACTAAAATGATCTCTTCTTCTATGGAAGCCTTAAGTTTCTTCTAT  727

seq1  GGAATTTGAAACTGCAATCAGGAGACTAGCACAAATGCCAACCAATAACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGAAACTGCAATCAGGAGACTAGCACAAATGCCAACCAATAACT  777

seq1  TCACAATGTCACATAAACACAGAGCAAAACCCTAATATGGTATTTAGGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGTCACATAAACACAGAGCAAAACCCTAATATGGTATTTAGGCA  827

seq1  GAAATCTATGGTTCCTCTTACTAATGTGAAAATAGCTTCCAATTACTGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTATGGTTCCTCTTACTAATGTGAAAATAGCTTCCAATTACTGAC  877

seq1  AGCTGAGTGACAAGACAAGATTCTGCATCTGACACGACTATTGTATCCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTGACAAGACAAGATTCTGCATCTGACACGACTATTGTATCCTG  927

seq1  CTGATTCTCAAATTAAAGCCAAACAAAGGAACTTAACAAGCTCATAAAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTCAAATTAAAGCCAAACAAAGGAACTTAACAAGCTCATAAAGA  977

seq1  CCCACAATCAAAGGCGCTCCTCTGTGGGTTGAAAAATAAATTGTAACTGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAATCAAAGGCGCTCCTCTGTGGGTTGAAAAATAAATTGTAACTGC  1027

seq1  TGTTTGTTTTAAATTCATATTGAAGAGTACATGTGAAGTCTTTCCAGGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTAAATTCATATTGAAGAGTACATGTGAAGTCTTTCCAGGGA  1077

seq1  AGGGAAAAAAATATAACGTTTCTTCCTTGTGCTGTGTTGCTGACTGCTAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAAAATATAACGTTTCTTCCTTGTGCTGTGTTGCTGACTGCTAC  1127

seq1  TGGATGATATGAAAGAATTC  1166
      ||||||||||||||||||||
seq2  TGGATGATATGAAAGAATTC  1147


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