BAC Information

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BAC

Clone NameB6Ng01-289C19
Chromosome13 (Build37)
Map Location 23,538,524 - 23,539,669
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1
Downstream geneBtn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289C19.bB6Ng01-289C19.g
ACCGA086646GA086647
length1,1911,150
definitionB6Ng01-289C19.b B6Ng01-289C19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggaactatccacaggctagcaataccctctcaggcaaaggct
cagggaaacatccatgggccccttggctgaatggggacacccttcctatc
ttccaagtacactggttaacctgaaacctgaagatgtctctgggtagcta
gatctggcccattctattactttgggcccacagctaccatgagttccaaa
ttgtctctgccaaaggacacacatttagcctgtctgtgagctaatgtaaa
agagctccatttaggagacctcaaactggtcacacttgtgactcttggtt
ccaatttgccttcagtataattggacaatggccagcagttccccaccccc
aaagaaaaaacacaagtaaatcttttcccaaatgctaacactttattcaa
tgcattcctctgccctgtttcagggtttttccaatagactaaaactgcag
tttgggggatattttgaacataaatcaactctatgtgtgtgtgtcattaa
ggagtacaggagtggacatgaaaggtgacctacaggagcagaaatttgaa
aactcaaaagacaactgcatcaccaaaggcccatcccagcataggtggca
tctttcaaaagctgggtaccctggagcacattgcatagcccaaggtagct
caacaaggtagagactgccccgagtcatccagttgatctaaacctcttcc
aggcatctcagctgctttctgcttctcctttcagcttttgcagcttggtt
tctttactcttgagaaggggcctggtgaatctgtttagtttcagggactt
ccagaaagttattctgagttttttaacttccagtgtaaggagattctcta
aaggcattcaatcctagaggaaactgctatactacccttgtccattagag
ctatcgataaatattcttatggaatctttgaaaggataaaaaaggttatt
ttagggcaaatccagagtataaaagaaatacaattaacttattagacaga
acgtagttcttcagtgctagaaaacctcttttaggcgagaagtacctagg
attccttaaatatcaaccatgatatcagtgtttagcattcacttcaatta
gtctatgccatgtcttccgaagccttggcatcatttcggtttgatggata
ctgacttcatttggctaaatgggaactccatgcgtgagtac
acagactggttacagaatgaaaaagtctcaaaacacaacgacagtaagag
tgatctttttgttccagacaaactcagacatgaatggattttcttcattg
aatttccaggaagtcaaacaaaaagacctgtacattccgagccagccagg
agtcgaacctggaatcttctgatccgtagtcagacgcgttatccattgcg
ccactggccctgtacacgtaagcccttgggtggggcaactacttacatta
tttcgaggcttaaaattgtactgccctcctggcttaggtttggtttagga
taatagattttagatattcttttatttctattccttttaggtttgttttt
gatcctctccccccctcaaaaacaaaacaaaacaaacaaacaaacaaaca
aacaaaaaaacggtggtaagagatgtccctatgtcacctttctattcacg
ctctcattcattcaaccaatattgatgaatgctcaaggaataaaatagta
aagaaaacagagttccccgtgccctctagaaaataatatggtagttctga
tacaaacactaaaactctaaataacactttgatggatttagaagaaaaat
aatgctaaaaggaaaggaaagaggaacatggtcatggcatcctttgatat
tttttattgtctccctgtaggttgtttaacctccgaccccaaatatttcc
caaacaagattgcaacaggaggtctcactgtgtgtctctgcatgttgcct
ttatgagaatatgtcaattctggtacttatttggttactttctaggcaaa
gatggttttcatatgtgtgtttcagtctttctatgtttttgaaaaggcat
ctctattctcgtgcactgtaaataaatcaagggctgttgaacagaattta
attgcttgatttaagactgtacatgatgagattagaaagctagttttggt
gcatatagtttcacaaccctttaatgtgcatgcacgggtgtctgtttttt
ttacatctaagctttaatgaagcctactaacactttcctcttcaaaaata
gggcttctttggtcatcagattttgtaccacagactcagaacgttatttg
ggattttccacatttccatcgcgaatgaaatctattaaatatatttatat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23538524_23539669
seq2: B6Ng01-289C19.g_76_1225

seq1  ACAGACTGGTTACAGAATGAAAAAGTCTCAAAACACAACGACAGTAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGGTTACAGAATGAAAAAGTCTCAAAACACAACGACAGTAAGAG  50

seq1  TGATCTTTTTGTTCCAGACAAACTCAGACATGAATGGATTTTCTTCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTTTGTTCCAGACAAACTCAGACATGAATGGATTTTCTTCATTG  100

seq1  AATTTCCAGGAAGTCAAACAAAAAGACCTGTACATTCCGAGCCAGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAGGAAGTCAAACAAAAAGACCTGTACATTCCGAGCCAGCCAGG  150

seq1  AGTCGAACCTGGAATCTTCTGATCCGTAGTCAGACGCGTTATCCATTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAACCTGGAATCTTCTGATCCGTAGTCAGACGCGTTATCCATTGCG  200

seq1  CCACTGGCCCTGTACACGTAAGCCCTTGGGTGGGGCAACTACTTACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGCCCTGTACACGTAAGCCCTTGGGTGGGGCAACTACTTACATTA  250

seq1  TTTCGAGGCTTAAAATTGTACTGCCCTCCTGGCTTAGGTTTGGTTTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGGCTTAAAATTGTACTGCCCTCCTGGCTTAGGTTTGGTTTAGGA  300

seq1  TAATAGATTTTAGATATTCTTTTATTTCTATTCCTTTTAGGTTTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATTTTAGATATTCTTTTATTTCTATTCCTTTTAGGTTTGTTTTT  350

seq1  GATCCTCTCCCCCCCTCAAAAACAAAACAAAACAAACAAACAAACAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTCCCCCCCTCAAAAACAAAACAAAACAAACAAACAAACAAACA  400

seq1  AACAAAAAAACGGTGGTAAGAGATGTCCCTATGTCACCTTTCTATTCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAACGGTGGTAAGAGATGTCCCTATGTCACCTTTCTATTCACG  450

seq1  CTCTCATTCATTCAACCAATATTGATGAATGCTCAAGGAATAAAATAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTCATTCAACCAATATTGATGAATGCTCAAGGAATAAAATAGTA  500

seq1  AAGAAAACAGAGTTCCCCGTGCCCTCTAGAAAATAATATGGTAGTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACAGAGTTCCCCGTGCCCTCTAGAAAATAATATGGTAGTTCTGA  550

seq1  TACAAACACTAAAACTCTAAATAACACTTTGATGGATTTAGAAGAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACTAAAACTCTAAATAACACTTTGATGGATTTAGAAGAAAAAT  600

seq1  AATGCTAAAAGGAAAGGAAAGAGGAACATGGTCATGGCATCCTTTGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAAAAGGAAAGGAAAGAGGAACATGGTCATGGCATCCTTTGATAT  650

seq1  TTTTTATTGTCTCCCTGTAGGTTGTTTAACCTCCGACCCCAAATATTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTGTCTCCCTGTAGGTTGTTTAACCTCCGACCCCAAATATTTCC  700

seq1  CAAACAAGATTGCAACAGGAGGTCTCACTGTGTGTCTCTGCATGTTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGATTGCAACAGGAGGTCTCACTGTGTGTCTCTGCATGTTGCCT  750

seq1  TTATGAGAATATGTCAATTCTGGTACTTATTTGGTTACTTTCTAGGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGAATATGTCAATTCTGGTACTTATTTGGTTACTTTCTAGGCAAA  800

seq1  GATGGTTTTCATATGTGTGTTTCAGTCTTTCTATGTTTTTGAAAAGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTTCATATGTGTGTTTCAGTCTTTCTATGTTTTTGAAAAGGCAT  850

seq1  CTCTATTCTCGTGCACTGTAAATAAATCAAGGGCTGTTGAACAGAATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTCTCGTGCACTGTAAATAAATCAAGGGCTGTTGAACAGAATTTA  900

seq1  ATTGCTTGATTTAAGACTGTACATGATGAGATTAGAAAGCTAGTTTTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGATTTAAGACTGTACATGATGAGATTAGAAAGCTAGTTTTGGT  950

seq1  GCATATAGTTTCAACAACCC-TTAATGTGCATGCACGGGTGTCTG-TTTT  998
      |||||||||||| ||||||| |||||||||||||||||||||||| ||||
seq2  GCATATAGTTTC-ACAACCCTTTAATGTGCATGCACGGGTGTCTGTTTTT  999

seq1  TTTACATCTAAGCTTTAATGGAAGCCTACTTAACAC-TTCCTCCTCAAAA  1047
      ||||||||||||||||||| ||||||||| |||||| |||||| ||||||
seq2  TTTACATCTAAGCTTTAAT-GAAGCCTAC-TAACACTTTCCTCTTCAAAA  1047

seq1  ATAGGGC-TCTTT-GTCATCAGATTTTGTA-CACAGACTCAGAAGGTAAT  1094
      ||||||| ||||| |||||||||||||||| ||||||||||||| || ||
seq2  ATAGGGCTTCTTTGGTCATCAGATTTTGTACCACAGACTCAGAACGTTAT  1097

seq1  TTGGTGATTTTCCAC---TCCATCGCAGAATGATA-CTATTATATATATT  1140
      |||| ||||||||||   |||||||| |||||| | |||||| |||||||
seq2  TTGG-GATTTTCCACATTTCCATCGC-GAATGAAATCTATTAAATATATT  1145

seq1  ATATAT  1146
       |||||
seq2  -TATAT  1150