BAC Information

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BAC

Clone NameB6Ng01-289D22
Chromosome13 (Build37)
Map Location 82,257,576 - 82,400,669
singlet/doubletdoublet
Overlap genenone
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC238756, LOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289D22.bB6Ng01-289D22.g
ACCGA086700GA086701
length1,1621,138
definitionB6Ng01-289D22.b B6Ng01-289D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,257,576 - 82,258,686)(82,399,496 - 82,400,669)
sequence
gaattctcaactgaggaataccaaatggctaagaagcacctaaagaaaca
ttcaactttcttagtcaccagggaaatgcaaatcaaaacaaccctgagat
tccacctctcaccagtcagaatggctaagatcaaaaactcaggtgacatc
agttgctggtgaggatgtggagaaagaggaacactcctccattgctggtg
agattgcaagctggtaaatcaactctgtaaataagtttggcagctcctca
gaaaattggacatagtactaccagaagatccagcaataccattcctgggc
atatacccagaagatgctccaacttgtaataaggacacatgctccactat
gttcatagaagccttatttataatagccagaagctggaaagaacctagat
gtccctcaagagaggaatggatacagaaaatgtggtacattaacacaatg
gaatattatagttattaaaaacaatgaaattatgaaattcttagacaaat
ggatggatctggaggatattatcctgagtgagttaacccaatcacaaaag
gatagagaaattcttgttttttgtgttagtacagactcaggaagtgagct
gtggaaggccccattcatactccttggggttgattttcttccctggttat
acagatgatgtttctaggctaagctttaattcaccccattagagttctta
ttcatactttagaccataggagaggtattgaaccatcactgtcctaaaga
gataaaaatcttgcttgtttattactgcacacaagtggatagaacactgg
tgacagaaaagagcatcaatattggcaaaaggaacaatggtggcattgat
attattttgtgttgtaaactattggttaagacaagtcaagggaaagatat
ttaataagtaaaatgtaggtactgaaggaatgtataaaagatctttggag
atctggtagagacgtcagtattaactacagagcattaagcccagcccttg
tagctaatcattttgtaattaaaagtaatctactacatgccagacattgt
atgctgtcagattatattattaaaggaaaagggacaaatctgctatagta
ttttataatttcacagaagggagcaacaaggcagtctaagataagaaagc
tatttgtctatc
gaattcattataataattagatatatggccttttattctacaatgaaatg
tcaaaatacaaatattcaaaaaagaagcaacttattcactcaaattcaca
ataaatttaagatgattgatattacacaggtttcaaagtgacataatcaa
gtgaagataatagggtagtagatctaggatgaaagacacttaatagatgg
taagaggaaagacactaactagaaaaattggaggtttaaaagaaactttg
tttcataatttaatacagagtgagtcatgttttggaaatctgttaaatgc
cactcaccataaataaattactaaccgtgaatttacagagctcccataat
actgtgtttacagagaaaaaaaaaaaaaaactatatttgaaagagatcgc
tcttggcccacaagttacatctgagctttgatctctcaggcttttgtctg
tcaactattatactcgaagttactattccatttgtgaatatgtgcagact
ttcagctatgcttcccccttgcagtatgaagatgatggactagtgctagt
tcagcaccatagaggaggagctagagcagaagggaaggttaactgatcca
tccaatcttcttagctgtcatctttgtcactgtggacagaatttatgttc
tctgagcctcatatttccattaacaaaaaagtagtagggatttttattgt
cattatcattactactactactactactactactactactactactacta
ctactacttctactactactatgactatttgaaacataaaacatcaccat
gttaattttatttatttaggaaagaagttgacatttctgtcacaaatatt
agttttaacatgtctcattggagtttttttagaacaatatttcctttaag
gaaaatcaaaatgctgaatataaagagcattttaatgagacaaatttatc
tcatgaggagaaaaaaatctatatttagcactctttgttatctcactttc
tcatgactactgagacatgtactaatcaccagatttttcagcatgcccta
aggatcctgtacagtaaaaaaaaaatcaataagagtagatggaagtcgtc
gatcactctatctggtcatgtcctaagaatcctaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82257576_82258686
seq2: B6Ng01-289D22.b_100_1207

seq1  ACTTTCTTAGTCACCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTAGTCACCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA  50

seq1  CCTCTCACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACATCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACATCAGTT  100

seq1  GCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGAGAT  150

seq1  TGCAAGCTGGTAAATCAACTCTGTAAATAAGTTTGGCAGCTCCTCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCTGGTAAATCAACTCTGTAAATAAGTTTGGCAGCTCCTCAGAAA  200

seq1  ATTGGACATAGTACTACCAGAAGATCCAGCAATACCATTCCTGGGCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACATAGTACTACCAGAAGATCCAGCAATACCATTCCTGGGCATAT  250

seq1  ACCCAGAAGATGCTCCAACTTGTAATAAGGACACATGCTCCACTATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAGATGCTCCAACTTGTAATAAGGACACATGCTCCACTATGTTC  300

seq1  ATAGAAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGTCC  350

seq1  CTCAAGAGAGGAATGGATACAGAAAATGTGGTACATTAACACAATGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGAGGAATGGATACAGAAAATGTGGTACATTAACACAATGGAAT  400

seq1  ATTATAGTTATTAAAAACAATGAAATTATGAAATTCTTAGACAAATGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGTTATTAAAAACAATGAAATTATGAAATTCTTAGACAAATGGAT  450

seq1  GGATCTGGAGGATATTATCCTGAGTGAGTTAACCCAATCACAAAAGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGGAGGATATTATCCTGAGTGAGTTAACCCAATCACAAAAGGATA  500

seq1  GAGAAATTCTTGTTTTTTGTGTTAGTACAGACTCAGGAAGTGAGCTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTCTTGTTTTTTGTGTTAGTACAGACTCAGGAAGTGAGCTGTGG  550

seq1  AAGGCCCCATTCATACTCCTTGGGGTTGATTTTCTTCCCTGGTTATACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCCATTCATACTCCTTGGGGTTGATTTTCTTCCCTGGTTATACAG  600

seq1  ATGATGTTTCTAGGCTAAGCTTTAATTCACCCCATTAGAGTTCTTATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTTCTAGGCTAAGCTTTAATTCACCCCATTAGAGTTCTTATTCA  650

seq1  TACTTTAGACCATAGGAGAGGTATTGAACCATCACTGTCCTAAAGAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAGACCATAGGAGAGGTATTGAACCATCACTGTCCTAAAGAGATA  700

seq1  AAAATCTTGCTTGTTTATTACTGCACACAAGTGGATAGAACACTGGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTGCTTGTTTATTACTGCACACAAGTGGATAGAACACTGGTGAC  750

seq1  AGAAAAGAGCATCAATATTGGCAAAAGGAACAATGGTGGCATTGATATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGCATCAATATTGGCAAAAGGAACAATGGTGGCATTGATATTA  800

seq1  TTTTGTGTTGTAAACTATTGGTTAAGACAAGTCAA-GGAAAGATATTTAA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTGTGTTGTAAACTATTGGTTAAGACAAGTCAAGGGAAAGATATTTAA  850

seq1  TAAGTAAAATGTAGGTACTGAAGGAATGTATAAAAGATCTTTGGAGATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAATGTAGGTACTGAAGGAATGTATAAAAGATCTTTGGAGATCT  900

seq1  GGTAGAGACGTCAGTATTAACTACAGAGCATTAAGCCCAGCCCTTGTAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGACGTCAGTATTAACTACAGAGCATTAAGCCCAGCCCTTGTAGC  950

seq1  TTAATCATTTTGTAATTAAAAGTAATCTACTACATGCCAGACATTGTATT  999
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  -TAATCATTTTGTAATTAAAAGTAATCTACTACATGCCAGACATTGTA-T  998

seq1  GCTGGTCAGGATATATTATTAAAGGAAAAGGGACAAAATCTGCTATAGTA  1049
      ||| |||||  ||||||||||||||||||||||| |||||||||||||||
seq2  GCT-GTCAGATTATATTATTAAAGGAAAAGGGAC-AAATCTGCTATAGTA  1046

seq1  -TTTATATTTTCACAGAAGGGAGCAACAA-GCAGTCTAGGAATAAGAAAG  1097
       |||||| ||||||||||||||||||||| |||||||| | |||||||||
seq2  TTTTATAATTTCACAGAAGGGAGCAACAAGGCAGTCTAAG-ATAAGAAAG  1095

seq1  CCTATTGGTCTATC  1111
       ||||| |||||||
seq2  -CTATTTGTCTATC  1108

seq1: chr13_82399496_82400669
seq2: B6Ng01-289D22.g_68_1205 (reverse)

seq1  CTCCTAGTATTCTCCTAGGACATGACCAGAGATGGAAGTTTGATAGA-GA  49
      ||||||| |||||  |||||||||||||||      ||  |||| || ||
seq2  CTCCTAGGATTCT--TAGGACATGACCAGA-----TAGAGTGATCGACGA  43

seq1  CAGATTCTCATCTTAAACTCTTTATGTGATTTTTTTTTTTTTACTGTTAA  99
      |   ||| |||||   |||| |||| |||   |||||||||||||||  |
seq2  C---TTC-CATCT---ACTC-TTAT-TGA---TTTTTTTTTTACTGT--A  79

seq1  CAAAGAAACCCTAAGGGCATTGCTGGAAAAAATCTGGGTGGAATAGTACA  149
      ||     | ||| |||||| |||||  ||||||||||   || |||||||
seq2  CA---GGATCCTTAGGGCA-TGCTG--AAAAATCTGG--TGATTAGTACA  121

seq1  TGTTCTTCAGTAGTCAATGAGAAAGTGAGATAAACAAAGGAGTTGCTTAA  199
      |||   ||||||||| ||||||||||||||| |||||| ||| ||| |||
seq2  TGT--CTCAGTAGTC-ATGAGAAAGTGAGAT-AACAAA-GAG-TGC-TAA  164

seq1  ATATAGATTTTTTTTCTCCTCATGAGATAAATTTGTCTCATTAAAATGCT  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGA-TTTTTTTCTCCTCATGAGATAAATTTGTCTCATTAAAATGCT  213

seq1  CTTTATATTCAGCATTTTGATTTTCCTTAAAGGAAATATTGTTCTAAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATTCAGCATTTTGATTTTCCTTAAAGGAAATATTGTTCTAAAAA  263

seq1  AACTCCAATGAGACATGTTAAAACTAATATTTGTGACAGAAATGTCAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAATGAGACATGTTAAAACTAATATTTGTGACAGAAATGTCAACT  313

seq1  TCTTTCCTAAATAAATAAAATTAACATGGTGATGTTTTATGTTTCAAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTAAATAAATAAAATTAACATGGTGATGTTTTATGTTTCAAATA  363

seq1  GTCATAGTAGTAGTAGAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTAGTAGTAGAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT  413

seq1  AGTAGTAGTAGTAGTAATGATAATGACAATAAAAATCCCTACTACTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGTAGTAGTAATGATAATGACAATAAAAATCCCTACTACTTTTT  463

seq1  TGTTAATGGAAATATGAGGCTCAGAGAACATAAATTCTGTCCACAGTGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATGGAAATATGAGGCTCAGAGAACATAAATTCTGTCCACAGTGAC  513

seq1  AAAGATGACAGCTAAGAAGATTGGATGGATCAGTTAACCTTCCCTTCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGACAGCTAAGAAGATTGGATGGATCAGTTAACCTTCCCTTCTGC  563

seq1  TCTAGCTCCTCCTCTATGGTGCTGAACTAGCACTAGTCCATCATCTTCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCCTCCTCTATGGTGCTGAACTAGCACTAGTCCATCATCTTCAT  613

seq1  ACTGCAAGGGGGAAGCATAGCTGAAAGTCTGCACATATTCACAAATGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAGGGGGAAGCATAGCTGAAAGTCTGCACATATTCACAAATGGAA  663

seq1  TAGTAACTTCGAGTATAATAGTTGACAGACAAAAGCCTGAGAGATCAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACTTCGAGTATAATAGTTGACAGACAAAAGCCTGAGAGATCAAAG  713

seq1  CTCAGATGTAACTTGTGGGCCAAGAGCGATCTCTTTCAAATATAGTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGTAACTTGTGGGCCAAGAGCGATCTCTTTCAAATATAGTTTTT  763

seq1  TTTTTTTTTTCTCTGTAAACACAGTATTATGGGAGCTCTGTAAATTCACG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCTCTGTAAACACAGTATTATGGGAGCTCTGTAAATTCACG  813

seq1  GTTAGTAATTTATTTATGGTGAGTGGCATTTAACAGATTTCCAAAACATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAATTTATTTATGGTGAGTGGCATTTAACAGATTTCCAAAACATG  863

seq1  ACTCACTCTGTATTAAATTATGAAACAAAGTTTCTTTTAAACCTCCAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGTATTAAATTATGAAACAAAGTTTCTTTTAAACCTCCAATT  913

seq1  TTTCTAGTTAGTGTCTTTCCTCTTACCATCTATTAAGTGTCTTTCATCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTTAGTGTCTTTCCTCTTACCATCTATTAAGTGTCTTTCATCCT  963

seq1  AGATCTACTACCCTATTATCTTCACTTGATTATGTCACTTTGAAACCTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTACTACCCTATTATCTTCACTTGATTATGTCACTTTGAAACCTGT  1013

seq1  GTAATATCAATCATCTTAAATTTATTGTGAATTTGAGTGAATAAGTTGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATCAATCATCTTAAATTTATTGTGAATTTGAGTGAATAAGTTGCT  1063

seq1  TCTTTTTTGAATATTTGTATTTTGACATTTCATTGTAGAATAAAAGGCCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGAATATTTGTATTTTGACATTTCATTGTAGAATAAAAGGCCA  1113

seq1  TATATCTAATTATTATAATGAATTC  1174
      |||||||||||||||||||||||||
seq2  TATATCTAATTATTATAATGAATTC  1138