BAC Information

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BAC

Clone NameB6Ng01-289F20
Chromosome13 (Build37)
Map Location 21,254,237 - 21,409,271
singlet/doubletdoublet
Overlap geneTrim27, Gpx5, LOC625752, Gpx6
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
Downstream geneOlfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289F20.bB6Ng01-289F20.g
ACCGA086789GA086790
length1,1001,148
definitionB6Ng01-289F20.b B6Ng01-289F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,254,237 - 21,255,341)(21,408,114 - 21,409,271)
sequence
gaattccaggccaaccagggctataaagtaagactctgtcttaaaaataa
aacaggtcataattataactctcctgtctgttttgtggtacagcaggata
ttctactcctcctgtggctgtttctaagattgtttctgtgaatcacctat
atttaggactttttttttttaacataatggcaaactgcattcagactaag
gtaaaacttatgattgtattttctttgcatttttgttttgttaataactg
gtgatggaaatcagaaccccacagcaagtgggacctgccctaaacactaa
gctgatgttcagcccgatttcaactcttacatagcctgtagcactcaggt
ccccaacctcgcttgggtgggtaagccagctagtaacagcacaaacattt
gggcacgtgcagtagtttgacgctacttggcagatatatgctccttggag
atgtgcccttgttggaattgtatcactggggctgggctctggagtgccaa
atgctcgagctgggctcagagtcttcattcatttcctgttgtctgatcag
gatgtaagagtctcagctacctcaccagcaccaagtctgtctgtatgcag
ccctgctttcccaccattaccaggatcataatggactaaacctctgaggc
agtccaattaagtgctttcttttatggcaattacagtggtcatagtgtct
cttcacagcaatagaaccctgaccaaaaccaaaaaacaacaaaaaaaaaa
ccacaacaacaacaaaacatcatgaatactcagaattttgcctatggcaa
gcataaatgacatgggcagggcagcaggaaagacgaacaactgaaaacag
tatgatggaaagtgccatgcttagaccattactttgtttgctagtgtaaa
cagccaatctaaaaaaataaacaactccaaaatttctctttcttttttct
agcatatgaatttttggtcacgattattaaataggatatccctaaataaa
tttatgaagccatagctcagatttagttcctcccaacagaccaatcagag
cagagtctctggctctataggtaatcaaacaggacttgaaacaccagata

gaattcagaacattaggaaggggatattttgacttcagattgccaggtgt
atcaccatttcctatgttttttcctttcccctgaatgtcttctccttaca
tcttccactattctcaccctcaatggagccaagtgtgggaagagtacttg
ggcatttccaagagggctaaatggaattcaaggtgtcacggtgacattct
tcagcccattgttctatcaccttccctagaagattccagaatgggaaggt
atctaggcagatgaggaaagggtatcgctggggccccacacagcactcac
ttgagtccaaggagaatctctgagttctttccaggttcttgctttccaaa
ctggttgcatggaaagcccaaaaccgtgacgttgaatggcttcagctcct
cctgcaatgtgttcagctctgtagggagagggtgaacagcatggcagact
tcctactcagtactcaagatgtgaaggacccactgtgctgaccctcttgt
catgtgactacactgaggactatgaagagctgcagacttataagtaggca
gagcgagtcacaaggacacacggctctgggaactcatctccatggctaca
ggttttgcagcacagggtttcccaaataactgctcttcaccttgcacaca
gagcttacttaaagtaaacagacactgactgactaggcttatggaaaata
aggaaaaggcaaacaaaatgaacgtgctccctcctgcccccacaccaagc
ctcatgatggcacctctgacactcctgccactttcccagaagactctcag
ctactgcatattagaagtgatagaaaaaaatcagaatcgaactgcgtatg
gtggtacttagctctaatcctagcaagtgggagacagaggcaggggcatg
accataaggttgtaaggtcagcctgatccaatatagtaaggtttaatcta
actaagtctatatagtgagacagtgtctcaacaacaaacaaatatacaaa
aaacaaaacaaacaaaaaaatgccagagcctggttgcatagcattcttcc
accccgaggcctccccattttcactgtctcatagatcagagcctcttagc
ttttgtgcctcacccgagtccactctttctgttccttcaggttatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21254237_21255341
seq2: B6Ng01-289F20.b_44_1143

seq1  GAATTCCAGGCCAACCAGGGCTATAAAGTAAGACTCTGTCTTAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAACCAGGGCTATAAAGTAAGACTCTGTCTTAAAAATAA  50

seq1  AACAGGTCATAATTATAACTCTCCTGTCTGTTTTGTGGTACAGCAGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTCATAATTATAACTCTCCTGTCTGTTTTGTGGTACAGCAGGATA  100

seq1  TTCTACTCCTCCTGTGGCTGTTTCTAAGATTGTTTCTGTGAATCACCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTCCTCCTGTGGCTGTTTCTAAGATTGTTTCTGTGAATCACCTAT  150

seq1  ATTTAGGACTTTTTTTTTTTAACATAATGGCAAACTGCATTCAGACTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGACTTTTTTTTTTTAACATAATGGCAAACTGCATTCAGACTAAG  200

seq1  GTAAAACTTATGATTGTATTTTCTTTGCATTTTTGTTTTGTTAATAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTTATGATTGTATTTTCTTTGCATTTTTGTTTTGTTAATAACTG  250

seq1  GTGATGGAAATCAGAACCCCACAGCAAGTGGGACCTGCCCTAAACACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGAAATCAGAACCCCACAGCAAGTGGGACCTGCCCTAAACACTAA  300

seq1  GCTGATGTTCAGCCCGATTTCAACTCTTACATAGCCTGTAGCACTCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTTCAGCCCGATTTCAACTCTTACATAGCCTGTAGCACTCAGGT  350

seq1  CCCCAACCTCGCTTGGGTGGGTAAGCCAGCTAGTAACAGCACAAACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACCTCGCTTGGGTGGGTAAGCCAGCTAGTAACAGCACAAACATTT  400

seq1  GGGCACGTGCAGTAGTTTGACGCTACTTGGCAGATATATGCTCCTTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACGTGCAGTAGTTTGACGCTACTTGGCAGATATATGCTCCTTGGAG  450

seq1  ATGTGCCCTTGTTGGAATTGTATCACTGGGGCTGGGCTCTGGAGTGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCTTGTTGGAATTGTATCACTGGGGCTGGGCTCTGGAGTGCCAA  500

seq1  ATGCTCGAGCTGGGCTCAGAGTCTTCATTCATTTCCTGTTGTCTGATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCGAGCTGGGCTCAGAGTCTTCATTCATTTCCTGTTGTCTGATCAG  550

seq1  GATGTAAGAGTCTCAGCTACCTCACCAGCACCAAGTCTGTCTGTATGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAGAGTCTCAGCTACCTCACCAGCACCAAGTCTGTCTGTATGCAG  600

seq1  CCCTGCTTTCCCACCATTACCAGGATCATAATGGACTAAACCTCTGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTTCCCACCATTACCAGGATCATAATGGACTAAACCTCTGAGGC  650

seq1  AGTCCAATTAAGTGCTTTCTTTTATGGCAATTACAGTGGTCATAGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAATTAAGTGCTTTCTTTTATGGCAATTACAGTGGTCATAGTGTCT  700

seq1  CTTCACAGCAATAGAACCCTGACCAAAACCAAAAAACAACAAAAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGCAATAGAACCCTGACCAAAACCAAAAAACAACAAAAAAAAAA  750

seq1  CCACAACAACAACAAAACATCATGAATACTCAGAATTTTGCCTATGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACAACAACAAAACATCATGAATACTCAGAATTTTGCCTATGGCAA  800

seq1  GCATAAATGACATGGGCAGGGCAGCAGGAAAGACGAACAACTGAAAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAATGACATGGGCAGGGCAGCAGGAAAGACGAACAACTGAAAACAG  850

seq1  TATGATGGAAAGTGCCATGCTTAGACCATTACTTTGTTTGCTAGTGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGAAAGTGCCATGCTTAGACCATTACTTTGTTTGCTAGTGTAAA  900

seq1  CAGCCAATCT-AAAAAATAAACAACTCCAAAATTTCTCTTTCTTTTTCTT  949
      |||||||||| ||||||||||||||||||||||||||||||||||||  |
seq2  CAGCCAATCTAAAAAAATAAACAACTCCAAAATTTCTCTTTCTTTTTTCT  950

seq1  AGCATATGAATTTTT-GTCACGATTATTAAATAGGATATCCCTAAATAAA  998
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  AGCATATGAATTTTTGGTCACGATTATTAAATAGGATATCCCTAAAT-AA  999

seq1  ATTTATGAAGCCATAGCTCAGAATTTAGTTCCTCCCAACAGACCAAATCA  1048
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  ATTTATGAAGCCATAGCTCAG-ATTTAGTTCCTCCCAACAGACC-AATCA  1047

seq1  GAGCAGAGTCTCTTGCTCTATTAAGTAATCAAACAGAACTTTGAAACAAC  1098
      ||||||||||||| |||||| || |||||||||||| || ||||||||  
seq2  GAGCAGAGTCTCTGGCTCTA-TAGGTAATCAAACAGGAC-TTGAAACA--  1093

seq1  CCAGATA  1105
      |||||||
seq2  CCAGATA  1100

seq1: chr13_21408114_21409271
seq2: B6Ng01-289F20.g_67_1214 (reverse)

seq1  AAAATAA-CTGAAG--ACAG-AAGAGTGG-CTCGGGTGA-GCAC-AAAGC  43
      ||||||| ||||||  |||| |||||||| ||||||||| |||| |||||
seq2  AAAATAACCTGAAGGAACAGAAAGAGTGGACTCGGGTGAGGCACAAAAGC  50

seq1  TAAGAGGCTCTTGATCTATGAGGAACAGTTGAAAAT-GTGAGGCCTCGGG  92
      |||||||||| |||||||||||  |||| ||||||| | |||||||||||
seq2  TAAGAGGCTC-TGATCTATGAG--ACAG-TGAAAATGGGGAGGCCTCGGG  96

seq1  GTGG-AGAATGCTATGCAACCAGGCTTCTTGGCATTTTTTT-TTTGTTTT  140
      |||| |||||||||||||||||||||   |||||||||||| ||||||||
seq2  GTGGAAGAATGCTATGCAACCAGGCT--CTGGCATTTTTTTGTTTGTTTT  144

seq1  TGTTTTTGTTTTTTTTGTTATTATTTTGTTTTGTTTTGTTTTGAGACACT  190
        ||||||| |                  |||||||  | ||||||||||
seq2  GTTTTTTGTAT-----------------ATTTGTTTGTTGTTGAGACACT  177

seq1  GTCTCACTATATAGACTTAGTTAGATTAAACCTTACTATA-TGGATCAGG  239
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCTCACTATATAGACTTAGTTAGATTAAACCTTACTATATTGGATCAGG  227

seq1  CTGACC-TACAA-CTTATGGTCATGCCCCTGCCTCTGTCTCCCACTTGCT  287
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGACCTTACAACCTTATGGTCATGCCCCTGCCTCTGTCTCCCACTTGCT  277

seq1  AGGATTAGAGCTAAGTACCACCATACGCAGTTCGATTCTGATTTTTTTCT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGAGCTAAGTACCACCATACGCAGTTCGATTCTGATTTTTTTCT  327

seq1  ATCACTTCTAATATGCAGTAGCTGAGAGTCTTCTGGGAAAGTGGCAGGAG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTCTAATATGCAGTAGCTGAGAGTCTTCTGGGAAAGTGGCAGGAG  377

seq1  TGTCAGAGGTGCCATCATGAGGCTTGGTGTGGGGGCAGGAGGGAGCACGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGGTGCCATCATGAGGCTTGGTGTGGGGGCAGGAGGGAGCACGT  427

seq1  TCATTTTGTTTGCCTTTTCCTTATTTTCCATAAGCCTAGTCAGTCAGTGT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTTGCCTTTTCCTTATTTTCCATAAGCCTAGTCAGTCAGTGT  477

seq1  CTGTTTACTTTAAGTAAGCTCTGTGTGCAAGGTGAAGAGCAGTTATTTGG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTACTTTAAGTAAGCTCTGTGTGCAAGGTGAAGAGCAGTTATTTGG  527

seq1  GAAACCCTGTGCTGCAAAACCTGTAGCCATGGAGATGAGTTCCCAGAGCC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTGCTGCAAAACCTGTAGCCATGGAGATGAGTTCCCAGAGCC  577

seq1  GTGTGTCCTTGTGACTCGCTCTGCCTACTTATAAGTCTGCAGCTCTTCAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCTTGTGACTCGCTCTGCCTACTTATAAGTCTGCAGCTCTTCAT  627

seq1  AGTCCTCAGTGTAGTCACATGACAAGAGGGTCAGCACAGTGGGTCCTTCA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCAGTGTAGTCACATGACAAGAGGGTCAGCACAGTGGGTCCTTCA  677

seq1  CATCTTGAGTACTGAGTAGGAAGTCTGCCATGCTGTTCACCCTCTCCCTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGAGTACTGAGTAGGAAGTCTGCCATGCTGTTCACCCTCTCCCTA  727

seq1  CAGAGCTGAACACATTGCAGGAGGAGCTGAAGCCATTCAACGTCACGGTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGAACACATTGCAGGAGGAGCTGAAGCCATTCAACGTCACGGTT  777

seq1  TTGGGCTTTCCATGCAACCAGTTTGGAAAGCAAGAACCTGGAAAGAACTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTTTCCATGCAACCAGTTTGGAAAGCAAGAACCTGGAAAGAACTC  827

seq1  AGAGATTCTCCTTGGACTCAAGTGAGTGCTGTGTGGGGCCCCAGCGATAC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCTCCTTGGACTCAAGTGAGTGCTGTGTGGGGCCCCAGCGATAC  877

seq1  CCTTTCCTCATCTGCCTAGATACCTTCCCATTCTGGAATCTTCTAGGGAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTCATCTGCCTAGATACCTTCCCATTCTGGAATCTTCTAGGGAA  927

seq1  GGTGATAGAACAATGGGCTGAAGAATGTCACCGTGACACCTTGAATTCCA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATAGAACAATGGGCTGAAGAATGTCACCGTGACACCTTGAATTCCA  977

seq1  TTTAGCCCTCTTGGAAATGCCCAAGTACTCTTCCCACACTTGGCTCCATT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCCTCTTGGAAATGCCCAAGTACTCTTCCCACACTTGGCTCCATT  1027

seq1  GAGGGTGAGAATAGTGGAAGATGTAAGGAGAAGACATTCAGGGGAAAGGA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGAGAATAGTGGAAGATGTAAGGAGAAGACATTCAGGGGAAAGGA  1077

seq1  AAAAACATAGGAAATGGTGATACACCTGGCAATCTGAAGTCAAAATATCC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATAGGAAATGGTGATACACCTGGCAATCTGAAGTCAAAATATCC  1127

seq1  CCTTCCTAATGTTCTGAATTC  1158
      |||||||||||||||||||||
seq2  CCTTCCTAATGTTCTGAATTC  1148