BAC Information

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BAC

Clone NameB6Ng01-289M24
Chromosome13 (Build37)
Map Location 74,520,949 - 74,604,601
singlet/doubletdoublet
Overlap geneLOC666670, LOC634386, LOC100042547, LOC666683, LOC547136
Upstream geneAytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72
Downstream geneBC012278, LOC434490, Arts1, Cast, LOC622204, EG544954, Pcsk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289M24.bB6Ng01-289M24.g
ACCGA087109GA087110
length1,1911,159
definitionB6Ng01-289M24.b B6Ng01-289M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,520,949 - 74,522,145)(74,603,444 - 74,604,601)
sequence
gaattctatagaatcattaatttatctaaacatcattgattcataaaaat
tcatctttatgctaatatgcaggaaatttgatcaacagggtgggctaatg
gggaggattattatattaatttaataatgacaggaaaggcatatcaactg
caagaagcaaccttcagatgaagtctctttggaaccttgccattgaggtc
actcatccaggactatcctgggccacctccaggaaggccacctgctagct
cccgacaggtggtccaacctcacaggaggatctgcatcactgggcaggct
ttaggattggatagctttgcccatgcttccctccgcaatggacttttatc
tctcttgcactgtaatttaaaatatatttcttctgtaggttgctattggt
cctgatgttttattacaacaacagaaaattactaattcaattttttgaag
cataccttaactttgaaagtttttccttatcttttgctatatctactgat
taaaataaatgcatttacaagtatgtattttcaaggataagagtcctggt
ggccccaaacttacagtactcttcagctttccaagtgcctgaattacagg
tagaaaagtgtagggacctaagaatgtatagatttgtgtcagtttttaac
aaaacattaaaaaattaaagttaataaaatttatagaacaagcatataaa
acaggaaacaggaataaaatgactcctaattatattgtctggttcatcca
tcatcagagaagctgcttctttcatgtggggagccgccctcacattcgcc
gttgcaagatggcgctgacatcctgtgttctaagtggtaaacaaataatc
tgcgcatgtgccaagggtagttttccaccccatgtgctctgccttccccg
tgacgacaactcggccgatgggctgcagccaatcaaggagtaatacgtcc
taggcggagaataattctcctttaaaagggacggggtttcgccatctctc
ttctgcactctgcctcctgagatgtaagcaataaagttttgccgcagaag
gatctggtttgctgcgtctttctggccgtccacgacgctgtaagactttc
agtagataaaacaacataaagaccacactggacaatgtgtagagtgtgag
agaccttggacattcagtcctaggttagaaaaacccctcca
gaattcatgtcctctggtttacatggccactataaatacctgagcttcca
tccttacctaatttgaagaaatggttgtatggcgtgtgtcttaacactcc
tatatttggtctttccatatcttcacatttctcacaaatcttccttcctt
tccatgaatccaacgctgatgatgctatggcaagatgaatgatgagtgaa
ctggcaatatagtcccctacaaggggatatctgtactttttggtgtttgt
acaaaggctcatcctacatttttaaactgatgaaactggagatctagaaa
gagcaacaatcatgttacctcagagaaaaatgcttctacagggccaaaat
ataactaactaaacaaaaagattctgacaataaaacaggaacttgaagtt
ggtatttatagtaggagtgtgttatgtgcatggcataacatatgcggaag
tcagactgttaggactattataatttctattcaggatgtagttaagaaga
taatcagggcagtgttacacttattataggaagagaataagaaaaataaa
attgaaaaaccaaggtcaatgtttgtgttgggtgcaagaagactgatttt
tttggccttgtaagaatagtagtgtgctggaaaacttgaggaattttgaa
ccgatcagtataagttaatattcagccactgtctctcctcattacaacat
tgtgtgatatatgaagagttaaatttgtcagaaatatttttaccatcatt
gttaacatgagttatgttcagtatggtgaaacatgcttccattatgaatt
ggactatattccagagcccttcaaaaaaggattaacttgaatcagctgtt
tcctaccttagaacccttaatgaagaatttgtaccagggactttttgaag
tccaagtacacgaaataggatacctgaataattctacaaatctgttaagt
ttgatgaagaatatcctgcatcacttttaaatcaaggagcattgtatagt
gtactgaaaggacaccatctatagtgagagtactattttgatatgaagaa
tagtattctgtatttgtattatagccttttagaccttggctcagctatta
agaagagtgctcagttgctcagctgttatataggcctgacgtgtgctgaa
aggtaaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_74520949_74522145
seq2: B6Ng01-289M24.b_45_1235

seq1  GAATTCTATAGAATCATTAATTTATCTAAACATCATTGATTCATAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGAATCATTAATTTATCTAAACATCATTGATTCATAAAAAT  50

seq1  TCATCTTTATGCTAATATGCAGGAAATTTGATCAACAGGGTGGGCTAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTATGCTAATATGCAGGAAATTTGATCAACAGGGTGGGCTAATG  100

seq1  GGGAGGATTATTATATTAATTTAATAATGACAGGAAAGGCATATCAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGATTATTATATTAATTTAATAATGACAGGAAAGGCATATCAACTG  150

seq1  CAAGAAGCAACCTTCAGATGAAGTCTCTTTGGAACCTTGCCATTGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCAACCTTCAGATGAAGTCTCTTTGGAACCTTGCCATTGAGGTC  200

seq1  ACTCATCCAGGACTATCCTGGGCCACCTCCAGGAAGGCCACCTGCTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCCAGGACTATCCTGGGCCACCTCCAGGAAGGCCACCTGCTAGCT  250

seq1  CCCGACAGGTGGTCCAACCTCACAGGAGGATCTGCATCACTGGGCAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACAGGTGGTCCAACCTCACAGGAGGATCTGCATCACTGGGCAGGCT  300

seq1  TTAGGATTGGATAGCTTTGCCCATGCTTCCCTCCGCAATGGACTTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTGGATAGCTTTGCCCATGCTTCCCTCCGCAATGGACTTTTATC  350

seq1  TCTCTTGCACTGTAATTTAAAATATATTTCTTCTGTAGGTTGCTATTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCACTGTAATTTAAAATATATTTCTTCTGTAGGTTGCTATTGGT  400

seq1  CCTGATGTTTTATTACAACAACAGAAAATTACTAATTCAATTTTTTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTTTTATTACAACAACAGAAAATTACTAATTCAATTTTTTGAAG  450

seq1  CATACCTTAACTTTGAAAGTTTTTCCTTATCTTTTGCTATATCTACTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTTAACTTTGAAAGTTTTTCCTTATCTTTTGCTATATCTACTGAT  500

seq1  TAAAATAAATGCATTTACAAGTATGTATTTTCAAGGATAAGAGTCCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATGCATTTACAAGTATGTATTTTCAAGGATAAGAGTCCTGGT  550

seq1  GGCCCCAAACTTACAGTACTCTTCAGCTTTCCAAGTGCCTGAATTACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAAACTTACAGTACTCTTCAGCTTTCCAAGTGCCTGAATTACAGG  600

seq1  TAGAAAAGTGTAGGGACCTAAGAATGTATAGATTTGTGTCAGTTTTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGTGTAGGGACCTAAGAATGTATAGATTTGTGTCAGTTTTTAAC  650

seq1  AAAACATTAAAAAATTAAAGTTAATAAAATTTATAGAACAAGCATATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTAAAAAATTAAAGTTAATAAAATTTATAGAACAAGCATATAAA  700

seq1  ACAGGAAACAGGAATAAAATGACTCCTAATTATATTGTCTGGTTCATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAACAGGAATAAAATGACTCCTAATTATATTGTCTGGTTCATCCA  750

seq1  TCATCAGAGAAGCTGCTTCTTTCATGTGGGGAGCCGCCCTCACATTCGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAGAAGCTGCTTCTTTCATGTGGGGAGCCGCCCTCACATTCGCC  800

seq1  GTTGCAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATC  850

seq1  TGCGCATGTGCCAAGGGTAGTTTTCCACCCCATGTGCTCTGCCTTCCCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCATGTGCCAAGGGTAGTTTTCCACCCCATGTGCTCTGCCTTCCCCG  900

seq1  TGACGACAACTCGGCCGATGGGCTGCAGCCAATCAAGGAGTAATACGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGACAACTCGGCCGATGGGCTGCAGCCAATCAAGGAGTAATACGTCC  950

seq1  TAGGCGGAGAATAATTCTCC-TTAAAAGGGACGGGGTTTCGCCATTCTCT  999
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  TAGGCGGAGAATAATTCTCCTTTAAAAGGGACGGGGTTTCGCCA-TCTCT  999

seq1  CTCTTGCACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGA  1049
      ||  ||||||||  |||||| |||||||||||||||||||||||||||||
seq2  CTTCTGCACTCTGCCTCCTG-AGATGTAAGCAATAAAGTTTTGCCGCAGA  1048

seq1  AGATTCTGGTTTGCTGCGTCTTTCCTGGCCGGTCACGAACGCGTGTAAGA  1099
      ||  ||||||||||||||||||| |||||||  |||| |||| |||||||
seq2  AGGATCTGGTTTGCTGCGTCTTT-CTGGCCGTCCACG-ACGC-TGTAAGA  1095

seq1  CTTTCAGTAGATAAAAACAACATAAAGACCCACAACTGGACAATGTGTAG  1149
      |||||||||||| ||||||||||||||| |||| ||||||||||||||||
seq2  CTTTCAGTAGAT-AAAACAACATAAAGA-CCAC-ACTGGACAATGTGTAG  1142

seq1  AGTGTGAGAGACTTTGGAACATTCAGTCCTAAGT--GAGAAACCCCTCCA  1197
      |||||||||||| |||| ||||||||||||| ||  || |||||||||||
seq2  AGTGTGAGAGACCTTGG-ACATTCAGTCCTAGGTTAGAAAAACCCCTCCA  1191

seq1: chr13_74603444_74604601
seq2: B6Ng01-289M24.g_68_1226 (reverse)

seq1  GGGTTAC--TTCAGCACA-GCAGGGCCTATAT-ACAGCTGAGGAAAACTG  46
      |||||||  ||||||||| |   ||||||||| |||||||||   |||||
seq2  GGGTTACCTTTCAGCACACGTCAGGCCTATATAACAGCTGAG--CAACTG  48

seq1  AGCAATCTTCTTAAATACTGAGGCCAAGTCTAAAA-GCTATATACCAAAT  95
      |||| |||||||||   ||||| | | |||||||| ||||||   |||||
seq2  AGCACTCTTCTTAATAGCTGAGCCAAGGTCTAAAAGGCTATAATACAAAT  98

seq1  ACAGAATACTA-TCTCATTATC-AAATAGTACTTCTCACTAATAGATGGT  143
      ||||||||||| |||   |||| ||||||||| ||||||| |||||||||
seq2  ACAGAATACTATTCTTCATATCAAAATAGTAC-TCTCACT-ATAGATGGT  146

seq1  GTCC-TTCAGTACACTAATAACAAATGCTCCCTGATTTAAAAGTGATGCA  192
      |||| ||||||||||| |||   |||||||| ||||||||||||||||||
seq2  GTCCTTTCAGTACACT-ATA--CAATGCTCCTTGATTTAAAAGTGATGCA  193

seq1  GGATATTCTTTCATCAAACTTAACAGATTTGTAGAATTATTCAGGTATCC  242
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTC-TTCATCAAACTTAACAGATTTGTAGAATTATTCAGGTATCC  242

seq1  TATTTCGTGTACTTGGACTTC-AAAAGTCCCTGGTACAAATTCTTCATTA  291
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATTTCGTGTACTTGGACTTCAAAAAGTCCCTGGTACAAATTCTTCATTA  292

seq1  AGGGTTCTAAGGTAGGAAACAGCTGATTCAAGTTAATCCTTTTTTGAAGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTAAGGTAGGAAACAGCTGATTCAAGTTAATCCTTTTTTGAAGG  342

seq1  GCTCTGGAATATAGTCCAATTCATAATGGAAGCATGTTTCACCATACTGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGAATATAGTCCAATTCATAATGGAAGCATGTTTCACCATACTGA  392

seq1  ACATAACTCATGTTAACAATGATGGTAAAAATATTTCTGACAAATTTAAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACTCATGTTAACAATGATGGTAAAAATATTTCTGACAAATTTAAC  442

seq1  TCTTCATATATCACACAATGTTGTAATGAGGAGAGACAGTGGCTGAATAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATATATCACACAATGTTGTAATGAGGAGAGACAGTGGCTGAATAT  492

seq1  TAACTTATACTGATCGGTTCAAAATTCCTCAAGTTTTCCAGCACACTACT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATACTGATCGGTTCAAAATTCCTCAAGTTTTCCAGCACACTACT  542

seq1  ATTCTTACAAGGCCAAAAAAATCAGTCTTCTTGCACCCAACACAAACATT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTACAAGGCCAAAAAAATCAGTCTTCTTGCACCCAACACAAACATT  592

seq1  GACCTTGGTTTTTCAATTTTATTTTTCTTATTCTCTTCCTATAATAAGTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGTTTTTCAATTTTATTTTTCTTATTCTCTTCCTATAATAAGTG  642

seq1  TAACACTGCCCTGATTATCTTCTTAACTACATCCTGAATAGAAATTATAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGCCCTGATTATCTTCTTAACTACATCCTGAATAGAAATTATAA  692

seq1  TAGTCCTAACAGTCTGACTTCCGCATATGTTATGCCATGCACATAACACA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTAACAGTCTGACTTCCGCATATGTTATGCCATGCACATAACACA  742

seq1  CTCCTACTATAAATACCAACTTCAAGTTCCTGTTTTATTGTCAGAATCTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACTATAAATACCAACTTCAAGTTCCTGTTTTATTGTCAGAATCTT  792

seq1  TTTGTTTAGTTAGTTATATTTTGGCCCTGTAGAAGCATTTTTCTCTGAGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAGTTAGTTATATTTTGGCCCTGTAGAAGCATTTTTCTCTGAGG  842

seq1  TAACATGATTGTTGCTCTTTCTAGATCTCCAGTTTCATCAGTTTAAAAAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGATTGTTGCTCTTTCTAGATCTCCAGTTTCATCAGTTTAAAAAT  892

seq1  GTAGGATGAGCCTTTGTACAAACACCAAAAAGTACAGATATCCCCTTGTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATGAGCCTTTGTACAAACACCAAAAAGTACAGATATCCCCTTGTA  942

seq1  GGGGACTATATTGCCAGTTCACTCATCATTCATCTTGCCATAGCATCATC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTATATTGCCAGTTCACTCATCATTCATCTTGCCATAGCATCATC  992

seq1  AGCGTTGGATTCATGGAAAGGAAGGAAGATTTGTGAGAAATGTGAAGATA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTGGATTCATGGAAAGGAAGGAAGATTTGTGAGAAATGTGAAGATA  1042

seq1  TGGAAAGACCAAATATAGGAGTGTTAAGACACACGCCATACAACCATTTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGACCAAATATAGGAGTGTTAAGACACACGCCATACAACCATTTC  1092

seq1  TTCAAATTAGGTAAGGATGGAAGCTCAGGTATTTATAGTGGCCATGTAAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTAGGTAAGGATGGAAGCTCAGGTATTTATAGTGGCCATGTAAA  1142

seq1  CCAGAGGACATGAATTC  1158
      |||||||||||||||||
seq2  CCAGAGGACATGAATTC  1159