BAC Information

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BAC

Clone NameB6Ng01-290C13
Chromosome13 (Build37)
Map Location 101,177,846 - 101,178,520
singlet/doubletsinglet
Overlap geneNaip1
Upstream geneMrps27, Mtap1b, Cartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838
Downstream geneGtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290C13.bB6Ng01-290C13.g
ACCGA087368GA087369
length1,196990
definitionB6Ng01-290C13.b B6Ng01-290C13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaatatccttaatcatcagggaaatagaaatcaaaagaaccctgagat
tccacctcacaccagtcagaatggctaagatcaacaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaaaactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactactggaggatcccccaatacctctcctgggc
atatacacagaagatgtcccaaccagtaaaaaggacacatgctccactat
tttcagagcagccttattcataatagccagaagctggaaagaacccagac
gcccctcaacagaggaatggatacagaaaatgtggacatctacacaatgg
agtactactcaggtattaaaaagaatgaatttatgaaattcctattcaaa
tggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaag
gaactcacacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagacataagatacaatttgcaaaacgcatgaaactcaag
aagaacgaagaccaaagtgtggacactttgccccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgtaacga
aaggatggaccatctagagactgccatatcctgggatccatcccataatc
agcttccaaatgctgacaccattgcacacactagcaagattttgctgaaa
ggacccagatagagctctctcttgtgagactatgccggggccctagcaaa
cacagaagtggatgctcacagttagctattggatggatcatggggccccc
aatggaggagctagagaaagtacccaaggagctaaaggatctgcaatcct
ataggtgcaacaacattacgaactaaccagtatccctgagctcttgactc
tagctgcatatgtatcaaaagatgtcctgtcgcatccactggaaaggaga
ggcccatagacttgcaacttttattgccctcaagttaatggatgtcaggc
ttaaaaatggaagacttgcgttgtttatatgcgagagatagtgttg
gaattcagtagctatattgctcaatgccttggcagtccttatttggtctt
cctgtctgaagactagagcctcagtcacgttcatatagagaactgtcaat
gccaaggtcaacaggaaggcgctgggaaaggaacatcgatctatgtagaa
gccacatccggaagtagtatttgataggtgctggggtagtgcaagaggaa
cagcaaaacagctttagaactcacggaacgcagtctcctggttagcacaa
actcatgggtgggtctccgagagaactatgggtcctgagagcttcatggt
gtcatagagatttgctctgcttgctgccttctcactgtgttactcataat
ctatgagttttatgaactctctagggggcttaacaacccctcactgggca
gtgtcattgtcactcacagcagcagtgcttgatcttcaagatcaatgatt
caatcaccacccttggaaagaacttagaaatgtacattgttagaaatgac
caccagtcttaagaatttggagaagtagattgtcagtaaagttaggttaa
gatgtttttgttaatggctctgatgttgaaaaatcttagaaatcaaatag
aaattcagaaaagcccacttttgattattgatcaagggatgttttcaaga
tcaggaacaagaacaatggcagctcagctagcactggctgatgtgactct
tgctgaagctgggctgatgatcgaggtgataattaatgtcttgtacccaa
tgttcccctcacctttctgataagatttaataaaaagttgtccccgagtg
aatgctggtgatctggactatggttcccatgcttaggctcaagagtttta
cccactgtgctgtcctcttagagcttcctcacagtccatgtttgttataa
ctcatcaagtgtcctcaatgctttcatctttcatcttgacataacccgag
gtcatctaacagagtctcaatgaaggaactggccctgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_101177846_101178520
seq2: B6Ng01-290C13.g_66_740 (reverse)

seq1  GAGCTGCCATTGTTCTTGTTCCTGATCTTGAAAACATCCCTTGATCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCCATTGTTCTTGTTCCTGATCTTGAAAACATCCCTTGATCAATA  50

seq1  ATCAAAAGTGGGCTTTTCTGAATTTCTATTTGATTTCTAAGATTTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGTGGGCTTTTCTGAATTTCTATTTGATTTCTAAGATTTTTCAA  100

seq1  CATCAGAGCCATTAACAAAAACATCTTAACCTAACTTTACTGACAATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGCCATTAACAAAAACATCTTAACCTAACTTTACTGACAATCTA  150

seq1  CTTCTCCAAATTCTTAAGACTGGTGGTCATTTCTAACAATGTACATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAAATTCTTAAGACTGGTGGTCATTTCTAACAATGTACATTTCT  200

seq1  AAGTTCTTTCCAAGGGTGGTGATTGAATCATTGATCTTGAAGATCAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTTCCAAGGGTGGTGATTGAATCATTGATCTTGAAGATCAAGCA  250

seq1  CTGCTGCTGTGAGTGACAATGACACTGCCCAGTGAGGGGTTGTTAAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGTGAGTGACAATGACACTGCCCAGTGAGGGGTTGTTAAGCCC  300

seq1  CCTAGAGAGTTCATAAAACTCATAGATTATGAGTAACACAGTGAGAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAGTTCATAAAACTCATAGATTATGAGTAACACAGTGAGAAGGC  350

seq1  AGCAAGCAGAGCAAATCTCTATGACACCATGAAGCTCTCAGGACCCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAGAGCAAATCTCTATGACACCATGAAGCTCTCAGGACCCATAG  400

seq1  TTCTCTCGGAGACCCACCCATGAGTTTGTGCTAACCAGGAGACTGCGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCGGAGACCCACCCATGAGTTTGTGCTAACCAGGAGACTGCGTTC  450

seq1  CGTGAGTTCTAAAGCTGTTTTGCTGTTCCTCTTGCACTACCCCAGCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGTTCTAAAGCTGTTTTGCTGTTCCTCTTGCACTACCCCAGCACCT  500

seq1  ATCAAATACTACTTCCGGATGTGGCTTCTACATAGATCGATGTTCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATACTACTTCCGGATGTGGCTTCTACATAGATCGATGTTCCTTTC  550

seq1  CCAGCGCCTTCCTGTTGACCTTGGCATTGACAGTTCTCTATATGAACGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGCCTTCCTGTTGACCTTGGCATTGACAGTTCTCTATATGAACGTG  600

seq1  ACTGAGGCTCTAGTCTTCAGACAGGAAGACCAAATAAGGACTGCCAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTCTAGTCTTCAGACAGGAAGACCAAATAAGGACTGCCAAGGC  650

seq1  ATTGAGCAATATAGCTACTGAATTC  675
      |||||||||||||||||||||||||
seq2  ATTGAGCAATATAGCTACTGAATTC  675