BAC Information

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BAC

Clone NameB6Ng01-290D16
Chromosome13 (Build37)
Map Location 30,621,310 - 30,778,252
singlet/doubletdoublet
Overlap geneUqcrfs1, Dusp22
Upstream geneCdkal1, E2f3, Mboat1, Agtr1a
Downstream geneLOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257, LOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290D16.bB6Ng01-290D16.g
ACCGA087420GA087421
length1,1401,054
definitionB6Ng01-290D16.b B6Ng01-290D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,777,103 - 30,778,252)(30,621,310 - 30,622,348)
sequence
gaattccatgagaatgtgaggagctttcagaatagcaagggttctggagc
tgggcagttagggagaagcaaggcaagggtgctattctgccatatctcct
ccacacaaggagaagcatccttctgcaatgtggtcaactgtgaatgctgc
agtggttgccatggtactgcctgaggtttacaacatggcaggtgcagctg
gaagggtgctttcctctctcagcgtagacaccagcgtcctagggcccccc
tttgatggggagtgctttaccacaaccctcccccttcactgtgaacactt
tgatgggctatttttatttcaacagctgtatgctctagcactggacacag
atggaagccccagagcagaaagcactgtggccaccaaggagacagagggt
catcaggatctcagaatggccagtaagagccactcacttgtgatatcatt
gctcattatggaagcatgaagaatagtttttcatcagaagagacaagaaa
catcagtttaaagggaacaagaaaacaaaacaagagatgtttaggatatg
ctactcatactaggttagccatgaaccattttctcttgagggtagaatac
cacatgcagttgaagttcagcagccttagtaaggaactgcctttccttgg
gatcatggcgctggttcctgagaacagaaacttgaacttaagtaaattag
gatgtatttgtcacatcatactagcaagttcctaggagtggagtctcaag
gcctgggcttggttctgtccatgcaagctgctcaccccagaagtgataag
gagacagctggttctcacctacagcccccttcatccccccaactggccat
ggtcagaagaaccgagggcttagtggctcatctcattttaactacaagaa
agtttggggaaaaaaaaaaaattccaagctagacctggtggtgtagttct
gtatcccagctcctcgtaaggctgaaggcaggactgcaagttccaggcct
gactgggccagatgagttcagagcagcatgaccctgctcaaacagagtcc
ggaaaagcgttggagatgattagtgaggcgagtcttgccttagctgcaga
aattcctgatcaatcctagtatggcaggggagaatcgagg
gaattcatgctttgaagcccccagcccgggctacttttctattcctcccg
agagacagatgagctgtccctttctcaagcgtcgatctacaaaaggacat
gagaagatgggtcagttccaccattagacactctcattgccaaggatggg
aaaatgtctctggaaaggacagagtgctctgtgacaaacaaggcttggtt
ccaggcttcagggtggcaggcagagctgtgtcctggacccagggtcccct
cagtcccatcaagtcacccagattggctgtcagcaattgtcccacccact
ctagacaggtctcagtttattcttttgatgacaaagcaaaagaaaaacac
tgtgcctgttaaaactggctgcaaacatcaaattagaacttctcgagtta
ttatcttcacgaacactgtctgtggttctcacaggagtgaaacttggacg
ctgtgccccaagacctctgtccttctcatgccaagccccttctgacagga
cacaggtattcacaagagtgacttccacatgttgtaaggccaaggcagag
gaaggggatagagaggaagatgtacttataaacactgtctcatttcattt
tcaaaagagctcttcagggcacgtcccactgttgccattttgtaaaagga
atgggggtcagagatacggggtggctctcctaggtcacttagctgggaaa
aggtgggctcgatattgaaagtcaagtcttcaggggagagagggaaagtg
ccgggtggacactgataggcatgaagtaggttgtagtccgatagaaagca
cacatcccatctaaacagtctttctgcccgggcggtggtgggcgcacgcc
ttttaatcccagcacttggggaggcagaggttaggcagatttctgagatc
gaaggccagcctggttctacaaagtgagttccaggacagctcagggctat
acagagaaactcttgtctaaaaaaaagtctttttatgggaatgcattcat
aacaggacaaaaggaatatctaccatttaaatcttaatcttgtagcatta
tttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_30777103_30778252
seq2: B6Ng01-290D16.b_47_1186 (reverse)

seq1  CCTCGA-TCTCCCCTCCCCTTACTAAGGATTTAATTCAGGGATTTCTGCA  49
      |||||| ||||||||  || |||| |||||| |  ||||| |||||||| 
seq2  CCTCGATTCTCCCCT-GCCATACT-AGGATTGA--TCAGGAATTTCTGC-  45

seq1  AACTAA-GCAAGAACTCG-CTCACTAAATTCAATCTCCAACGCCTTTTCG  97
      | |||| ||||| ||||| ||||||||  || ||||||||||| ||| ||
seq2  AGCTAAGGCAAG-ACTCGCCTCACTAA--TC-ATCTCCAACGCTTTTCCG  91

seq1  GACTCTGTTTTGAGGCAGGGTCCATGCTGCTCTTGAACTCATTCTGGCCC  147
      ||||||| ||||| ||||||| |||||||||| |||||||| ||||||||
seq2  GACTCTG-TTTGA-GCAGGGT-CATGCTGCTC-TGAACTCA-TCTGGCCC  136

seq1  AGTCAGGCCTGGAACTTGCAGTCCTGCC-TCAGCCTTACGAGGAGCTGGG  196
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTCAGGCCTGGAACTTGCAGTCCTGCCTTCAGCCTTACGAGGAGCTGGG  186

seq1  ATTACAGAACTACACCACCAGGTCTAGCTTGGAA-TTTTTTTTTTTCCCC  245
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  A-TACAGAACTACACCACCAGGTCTAGCTTGGAATTTTTTTTTTTTCCCC  235

seq1  AAACTTTCTTGTAGTTAAAATGAGATGAGCCACTAAGCCCTCGGTTCTTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCTTGTAGTTAAAATGAGATGAGCCACTAAGCCCTCGGTTCTTC  285

seq1  TGACCATGGCCAGTTGGGGGGATGAAGGGGGCTGTAGGTGAGAACCAGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGGCCAGTTGGGGGGATGAAGGGGGCTGTAGGTGAGAACCAGCT  335

seq1  GTCTCCTTATCACTTCTGGGGTGAGCAGCTTGCATGGACAGAACCAAGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTATCACTTCTGGGGTGAGCAGCTTGCATGGACAGAACCAAGCC  385

seq1  CAGGCCTTGAGACTCCACTCCTAGGAACTTGCTAGTATGATGTGACAAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTGAGACTCCACTCCTAGGAACTTGCTAGTATGATGTGACAAAT  435

seq1  ACATCCTAATTTACTTAAGTTCAAGTTTCTGTTCTCAGGAACCAGCGCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTAATTTACTTAAGTTCAAGTTTCTGTTCTCAGGAACCAGCGCCA  485

seq1  TGATCCCAAGGAAAGGCAGTTCCTTACTAAGGCTGCTGAACTTCAACTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCAAGGAAAGGCAGTTCCTTACTAAGGCTGCTGAACTTCAACTGC  535

seq1  ATGTGGTATTCTACCCTCAAGAGAAAATGGTTCATGGCTAACCTAGTATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTATTCTACCCTCAAGAGAAAATGGTTCATGGCTAACCTAGTATG  585

seq1  AGTAGCATATCCTAAACATCTCTTGTTTTGTTTTCTTGTTCCCTTTAAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATATCCTAAACATCTCTTGTTTTGTTTTCTTGTTCCCTTTAAAC  635

seq1  TGATGTTTCTTGTCTCTTCTGATGAAAAACTATTCTTCATGCTTCCATAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTCTTGTCTCTTCTGATGAAAAACTATTCTTCATGCTTCCATAA  685

seq1  TGAGCAATGATATCACAAGTGAGTGGCTCTTACTGGCCATTCTGAGATCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATGATATCACAAGTGAGTGGCTCTTACTGGCCATTCTGAGATCC  735

seq1  TGATGACCCTCTGTCTCCTTGGTGGCCACAGTGCTTTCTGCTCTGGGGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCCTCTGTCTCCTTGGTGGCCACAGTGCTTTCTGCTCTGGGGCT  785

seq1  TCCATCTGTGTCCAGTGCTAGAGCATACAGCTGTTGAAATAAAAATAGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGTGTCCAGTGCTAGAGCATACAGCTGTTGAAATAAAAATAGCC  835

seq1  CATCAAAGTGTTCACAGTGAAGGGGGAGGGTTGTGGTAAAGCACTCCCCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGTGTTCACAGTGAAGGGGGAGGGTTGTGGTAAAGCACTCCCCA  885

seq1  TCAAAGGGGGGCCCTAGGACGCTGGTGTCTACGCTGAGAGAGGAAAGCAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGGGGCCCTAGGACGCTGGTGTCTACGCTGAGAGAGGAAAGCAC  935

seq1  CCTTCCAGCTGCACCTGCCATGTTGTAAACCTCAGGCAGTACCATGGCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGCTGCACCTGCCATGTTGTAAACCTCAGGCAGTACCATGGCAA  985

seq1  CCACTGCAGCATTCACAGTTGACCACATTGCAGAAGGATGCTTCTCCTTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCAGCATTCACAGTTGACCACATTGCAGAAGGATGCTTCTCCTTG  1035

seq1  TGTGGAGGAGATATGGCAGAATAGCACCCTTGCCTTGCTTCTCCCTAACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGAGATATGGCAGAATAGCACCCTTGCCTTGCTTCTCCCTAACT  1085

seq1  GCCCAGCTCCAGAACCCTTGCTATTCTGAAAGCTCCTCACATTCTCATGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTCCAGAACCCTTGCTATTCTGAAAGCTCCTCACATTCTCATGG  1135

seq1  AATTC  1150
      |||||
seq2  AATTC  1140

seq1: chr13_30621310_30622348
seq2: B6Ng01-290D16.g_68_1121

seq1  GAATTCATGCTTTGAAGCCCCCAGCCCGGGCTACTTTTCTATTCCTCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTTTGAAGCCCCCAGCCCGGGCTACTTTTCTATTCCTCCCG  50

seq1  AGAGACAGATGAGCTGTCCCTTTCTCAAGCGTCGATCTACAAAAGGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGATGAGCTGTCCCTTTCTCAAGCGTCGATCTACAAAAGGACAT  100

seq1  GAGAAGATGGGTCAGTTCCACCATTAGACACTCTCATTGCCAAGGATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATGGGTCAGTTCCACCATTAGACACTCTCATTGCCAAGGATGGG  150

seq1  AAAATGTCTCTGGAAAGGACAGAGTGCTCTGTGACAAACAAGGCTTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTCTGGAAAGGACAGAGTGCTCTGTGACAAACAAGGCTTGGTT  200

seq1  CCAGGCTTCAGGGTGGCAGGCAGAGCTGTGTCCTGGACCCAGGGTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTCAGGGTGGCAGGCAGAGCTGTGTCCTGGACCCAGGGTCCCCT  250

seq1  CAGTCCCATCAAGTCACCCAGATTGGCTGTCAGCAATTGTCCCACCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCATCAAGTCACCCAGATTGGCTGTCAGCAATTGTCCCACCCACT  300

seq1  CTAGACAGGTCTCAGTTTATTCTTTTGATGACAAAGCAAAAGAAAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGGTCTCAGTTTATTCTTTTGATGACAAAGCAAAAGAAAAACAC  350

seq1  TGTGCCTGTTAAAACTGGCTGCAAACATCAAATTAGAACTTCTCGAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGTTAAAACTGGCTGCAAACATCAAATTAGAACTTCTCGAGTTA  400

seq1  TTATCTTCACGAACACTGTCTGTGGTTCTCACAGGAGTGAAACTTGGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCACGAACACTGTCTGTGGTTCTCACAGGAGTGAAACTTGGACG  450

seq1  CTGTGCCCCAAGACCTCTGTCCTTCTCATGCCAAGCCCCTTCTGACAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCCAAGACCTCTGTCCTTCTCATGCCAAGCCCCTTCTGACAGGA  500

seq1  CACAGGTATTCACAAGAGTGACTTCCACATGTTGTAAGGCCAAGGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTATTCACAAGAGTGACTTCCACATGTTGTAAGGCCAAGGCAGAG  550

seq1  GAAGGGGATAGAGAGGAAGATGTACTTATAAACACTGTCTCATTTCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGATAGAGAGGAAGATGTACTTATAAACACTGTCTCATTTCATTT  600

seq1  TCAAAAGAGCTCTTCAGGGCACGTCCCACTGTTGCCATTTTGTAAAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAGCTCTTCAGGGCACGTCCCACTGTTGCCATTTTGTAAAAGGA  650

seq1  ATGGGGGTCAGAGATACGGGGTGGCTCTCCTAGGTCACTTAGCTGGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGTCAGAGATACGGGGTGGCTCTCCTAGGTCACTTAGCTGGGAAA  700

seq1  AGGTGGGCTCGATATTGAAAGTCAAGTCTTCAGGGGAGAGAGGGAAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGCTCGATATTGAAAGTCAAGTCTTCAGGGGAGAGAGGGAAAGTG  750

seq1  CCGGGTGGACACTGATAGGCATGAAGTAGGTTGTAGTCCGATAGAAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTGGACACTGATAGGCATGAAGTAGGTTGTAGTCCGATAGAAAGCA  800

seq1  CACATCCCATCTAAACAGTCTTTCTG-CCGGGCGGTGGT-GGCGCACGCC  848
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  CACATCCCATCTAAACAGTCTTTCTGCCCGGGCGGTGGTGGGCGCACGCC  850

seq1  -TTTAATCCCAGCACTT-GGGAGGCAGAGG-TAGGCAGATTTCTGAGATC  895
       |||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TTTTAATCCCAGCACTTGGGGAGGCAGAGGTTAGGCAGATTTCTGAGATC  900

seq1  G-AGGCCAGCCTGG-TCTACAAAGTGAGTTCCAGGACAGC-CAGGGCTAT  942
      | |||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  GAAGGCCAGCCTGGTTCTACAAAGTGAGTTCCAGGACAGCTCAGGGCTAT  950

seq1  ACAGAGAAAC-CCTGTCTAAAAAAAAGTC-TTTTAT-GGAATGCA-TCAT  988
      |||||||||| | |||||||||||||||| |||||| |||||||| ||||
seq2  ACAGAGAAACTCTTGTCTAAAAAAAAGTCTTTTTATGGGAATGCATTCAT  1000

seq1  -ACAGGACAAAAAGAATA-CTACCA-TTAAATCTTAATCTGTAAGCATTA  1035
       ||||||||||| ||||| |||||| ||||||||||||||   |||||||
seq2  AACAGGACAAAAGGAATATCTACCATTTAAATCTTAATCTTGTAGCATTA  1050

seq1  TTTT  1039
      ||||
seq2  TTTT  1054