BAC Information

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BAC

Clone NameB6Ng01-291P08
Chromosome13 (Build37)
Map Location 21,316,192 - 21,359,844
singlet/doubletdoublet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291P08.bB6Ng01-291P08.g
ACCGA088716GA088717
length1,090998
definitionB6Ng01-291P08.b B6Ng01-291P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,358,737 - 21,359,844)(21,316,192 - 21,317,190)
sequence
gaattctctcagcgggatagcaactaaattaggaagaaacaaatacctct
tgggtttttatgctttagtttattttgcttgttttgttttgttttgagac
caggttttctgtaggctaccctggcctccatttcccaaattctaaggtta
caagtaatgggccatcacatttacaaactttaaacatgatacgctacgtt
ggagagatggctcagcggttaggagcactggatgctttttgagaggtcct
gagttcgattcccagcaaccctatagtaccttacaattatctgtagtggg
gatcctatgttctcttctggtgtttctgaagacagcaaacttacttacat
atatgaaaaaagtaaataaataagtagaaatgacttattaggtctgatga
ttgtgttcttcctttatgttttttttttttcatacgtaacaggaaatcaa
gttgagtcctatttcacagtccaattgcccattaatccatagatactaca
ttagctgatattatgagttcccacgggttacacagagaaactgtaacaag
ttgtttgctaacctagtaaaaacaaatcgccaggattcctgtcatggtgg
tacttactttgtgtggcctgctatggtatcactttaaccggaggaggaaa
tgacctttttctcctgctgttgccttagtggagacgcagaagtggccctg
tcttcactctggatgagctgtccctcaaagaactttcctttcctgaatcc
taagagcattcctctgccccttcccatgcatgcatgatgcttataactgc
aggcattcttgcgaccaatccagccagccagcctatggtgtcctgagggg
cccctgcactgctttccttcctaacaaagtgactcttcaagcagattcga
aaggccaaacatctttccagaactttatgaaatgacagaacagacggtcg
ggtttcaaagttaaaatattttaacgttgcgatcttacatcacatctatc
agtgtccactgcttagtcaaatctacactcagactttatcaaaaagctca
agtgatgtgatagaagcccgacttacgtggcgcagacagc
gaattcatggtcagcccattccacatatcaaaatccaggctagccaaggt
cagatagtcagaacctaaaacaaacaaaatcaacattttcaaaccaggtg
tgatttcaaacttccagtcctcgtacttggaagatggaggctagaatcat
cttcagctgcatactgagtgtacaaccaatctgagttacagaagtccttg
tcaaaaaaaaaaaaaaagccaggcatggtgtacagcctttagtgccagca
cttgggagacaaagtcaggcagatctctataagtttgaggccagccagag
ttacttagtcttatataacaacaatggacaaaaaatgttttacaaagtga
gagacatttatggaatatggaatatatggaatattgaccttggcaggtta
gccacccttaacagaataaacagaaacaaaaaaaacttctctcacaattt
tttgagactagtgtttttgtttgtttgttttaatgagaaagtatatttta
ctttttttttttttttaaggtttctttgtgtagccctggctattctggaa
ctaactctatagaccagactggcctcaaactcacagaaatcttcctgcct
ctaccttccaggtactgggactaaaggcatgtgtcaccacccccaggatg
cttgttgatgtaaggggtggaatcacatggttcctgcccctggtacaggg
cccgtagggcatgggcctccacaagtattgatggttgctgtgggcacaag
gcttgtttgtataatactgcacatacagtcatgctcttcctcggagggat
gtactatgagccagcttgtcagaatgatactaaggaatgagataaggaaa
ttaggtgatcgaaggggcaagatcctacaccagctaagtttttttggttt
tgcttgaaaggcagactttagtccaggttcaagcctagcatggttaggag
tggtaatttcaggacaggtcccacccagcttgcctgtgcttaacaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21358737_21359844
seq2: B6Ng01-291P08.b_48_1137 (reverse)

seq1  GCTGTTCTGCGCCACGTAAAGTCGGGGCTTTTCTATCACATCACTTTGGA  50
      |||| |||||||||||| ||||||||    ||||||||||||||||  ||
seq2  GCTG-TCTGCGCCACGT-AAGTCGGG---CTTCTATCACATCACTT--GA  43

seq1  GGCTTTTTGATAAAGTCTGAGTTGTTAGATTTGAACTAAGGCAGTGGACA  100
       |||||||||||||||||||||   |||||||| ||||| ||||||||||
seq2  -GCTTTTTGATAAAGTCTGAGT--GTAGATTTG-ACTAA-GCAGTGGACA  88

seq1  CTTGATAGATGTGATTGTAAGAATCGCAACGTTAAAATATTTTTAACTTT  150
      | |||||||||||| |||||| ||||||||||||||||| ||||||||||
seq2  C-TGATAGATGTGA-TGTAAG-ATCGCAACGTTAAAATA-TTTTAACTTT  134

seq1  GAAAACCGACCGTTCTGTTTCTGTCATTTCATAAAGTTCTGGAAAGATGT  200
      |||| ||||||| |||| ||||||||||||||||||||||||||||||||
seq2  GAAACCCGACCG-TCTG-TTCTGTCATTTCATAAAGTTCTGGAAAGATGT  182

seq1  TTGGCCTTTCGAATCTGCTTGAAGAGTCACTTTGTTAGGAAGGAAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTTCGAATCTGCTTGAAGAGTCACTTTGTTAGGAAGGAAAGCAG  232

seq1  TGCAGGGGCCCCTCAGGACACCATAGGCTGGCTGGCTGGATTGGTCGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGGCCCCTCAGGACACCATAGGCTGGCTGGCTGGATTGGTCGCAA  282

seq1  GAATGCCTGCAGTTATAAGCATCATGCATGCATGGGAAGGGGCAGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCTGCAGTTATAAGCATCATGCATGCATGGGAAGGGGCAGAGGAA  332

seq1  TGCTCTTAGGATTCAGGAAAGGAAAGTTCTTTGAGGGACAGCTCATCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAGGATTCAGGAAAGGAAAGTTCTTTGAGGGACAGCTCATCCAG  382

seq1  AGTGAAGACAGGGCCACTTCTGCGTCTCCACTAAGGCAACAGCAGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGACAGGGCCACTTCTGCGTCTCCACTAAGGCAACAGCAGGAGAA  432

seq1  AAAGGTCATTTCCTCCTCCGGTTAAAGTGATACCATAGCAGGCCACACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCATTTCCTCCTCCGGTTAAAGTGATACCATAGCAGGCCACACAA  482

seq1  AGTAAGTACCACCATGACAGGAATCCTGGCGATTTGTTTTTACTAGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTACCACCATGACAGGAATCCTGGCGATTTGTTTTTACTAGGTTA  532

seq1  GCAAACAACTTGTTACAGTTTCTCTGTGTAACCCGTGGGAACTCATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAACTTGTTACAGTTTCTCTGTGTAACCCGTGGGAACTCATAATA  582

seq1  TCAGCTAATGTAGTATCTATGGATTAATGGGCAATTGGACTGTGAAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAATGTAGTATCTATGGATTAATGGGCAATTGGACTGTGAAATAG  632

seq1  GACTCAACTTGATTTCCTGTTACGTATGAAAAAAAAAAAACATAAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAACTTGATTTCCTGTTACGTATGAAAAAAAAAAAACATAAAGGAA  682

seq1  GAACACAATCATCAGACCTAATAAGTCATTTCTACTTATTTATTTACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAATCATCAGACCTAATAAGTCATTTCTACTTATTTATTTACTTT  732

seq1  TTTCATATATGTAAGTAAGTTTGCTGTCTTCAGAAACACCAGAAGAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATATGTAAGTAAGTTTGCTGTCTTCAGAAACACCAGAAGAGAAC  782

seq1  ATAGGATCCCCACTACAGATAATTGTAAGGTACTATAGGGTTGCTGGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCCCCACTACAGATAATTGTAAGGTACTATAGGGTTGCTGGGAA  832

seq1  TCGAACTCAGGACCTCTCAAAAAGCATCCAGTGCTCCTAACCGCTGAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGGACCTCTCAAAAAGCATCCAGTGCTCCTAACCGCTGAGCC  882

seq1  ATCTCTCCAACGTAGCGTATCATGTTTAAAGTTTGTAAATGTGATGGCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAACGTAGCGTATCATGTTTAAAGTTTGTAAATGTGATGGCCC  932

seq1  ATTACTTGTAACCTTAGAATTTGGGAAATGGAGGCCAGGGTAGCCTACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGTAACCTTAGAATTTGGGAAATGGAGGCCAGGGTAGCCTACAG  982

seq1  AAAACCTGGTCTCAAAACAAAACAAAACAAGCAAAATAAACTAAAGCATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGGTCTCAAAACAAAACAAAACAAGCAAAATAAACTAAAGCATA  1032

seq1  AAAACCCAAGAGGTATTTGTTTCTTCCTAATTTAGTTGCTATCCCGCTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAGAGGTATTTGTTTCTTCCTAATTTAGTTGCTATCCCGCTGA  1082

seq1  GAGAATTC  1108
      ||||||||
seq2  GAGAATTC  1090

seq1: chr13_21316192_21317190
seq2: B6Ng01-291P08.g_69_1066

seq1  GAATTCATGGTCAGCCCATTCCACATATCAAAATCCAGGCTAGCCAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTCAGCCCATTCCACATATCAAAATCCAGGCTAGCCAAGGT  50

seq1  CAGATAGTCAGAACCTAAAACAAACAAAATCAACATTTTCAAACCAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGTCAGAACCTAAAACAAACAAAATCAACATTTTCAAACCAGGTG  100

seq1  TGATTTCAAACTTCCAGTCCTCGTACTTGGAAGATGGAGGCTAGAATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAAACTTCCAGTCCTCGTACTTGGAAGATGGAGGCTAGAATCAT  150

seq1  CTTCAGCTGCATACTGAGTGTACAACCAATCTGAGTTACAGAAGTCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTGCATACTGAGTGTACAACCAATCTGAGTTACAGAAGTCCTTG  200

seq1  TCAAAAAAAAAAAAAAAGCCAGGCATGGTGTACAGCCTTTAGTGCCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAAAAAAAAAGCCAGGCATGGTGTACAGCCTTTAGTGCCAGCA  250

seq1  CTTGGGAGACAAAGTCAGGCAGATCTCTATAAGTTTGAGGCCAGCCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGACAAAGTCAGGCAGATCTCTATAAGTTTGAGGCCAGCCAGAG  300

seq1  TTACTTAGTCTTATATAACAACAATGGACAAAAAATGTTTTACAAAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGTCTTATATAACAACAATGGACAAAAAATGTTTTACAAAGTGA  350

seq1  GAGACATTTATGGAATATGGAATATATGGAATATTGACCTTGGCAGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTTATGGAATATGGAATATATGGAATATTGACCTTGGCAGGTTA  400

seq1  GCCACCCTTAACAGAATAAACAGAAACAAAAAAAACTTCTCTCACAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCTTAACAGAATAAACAGAAACAAAAAAAACTTCTCTCACAATTT  450

seq1  TTTGAGACTAGTGTTTTTGTTTGTTTGTTTTAATGAGAAAGTATATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACTAGTGTTTTTGTTTGTTTGTTTTAATGAGAAAGTATATTTTA  500

seq1  CTTTTTTTTTTTTTTTAAGGTTTCTTTGTGTAGCCCTGGCTATTCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTAAGGTTTCTTTGTGTAGCCCTGGCTATTCTGGAA  550

seq1  CTAACTCTATAGACCAGACTGGCCTCAAACTCACAGAAATCTTCCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTATAGACCAGACTGGCCTCAAACTCACAGAAATCTTCCTGCCT  600

seq1  CTACCTTCCAGGTACTGGGACTAAAGGCATGTGTCACCACCCCCAGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTCCAGGTACTGGGACTAAAGGCATGTGTCACCACCCCCAGGATG  650

seq1  CTTGTTGATGTAAGGGGTGGAATCACATGGTTCCTGCCCCTGGTACAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGATGTAAGGGGTGGAATCACATGGTTCCTGCCCCTGGTACAGGG  700

seq1  CCCGTAGGGCATGGGCCTCCACAAGTATTGATGGTTGCTGTGGGCACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAGGGCATGGGCCTCCACAAGTATTGATGGTTGCTGTGGGCACAAG  750

seq1  GCTTGTTTGTATAATACTGCACATACAGTCATGCTCTTCCTCGGAGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTGTATAATACTGCACATACAGTCATGCTCTTCCTCGGAGGGAT  800

seq1  GTACTATGAGCCAGCTTGTCAGAATGATACTAAGGAATGAGATAAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATGAGCCAGCTTGTCAGAATGATACTAAGGAATGAGATAAGGAAA  850

seq1  TTTAGGTGATCGAA-GGGCAAGATCCTACA-CAGCTAAG-TTTTTTGGTT  897
       ||||||||||||| ||||||||||||||| |||||||| ||||||||||
seq2  -TTAGGTGATCGAAGGGGCAAGATCCTACACCAGCTAAGTTTTTTTGGTT  899

seq1  TTGCTTGAAAGGCAGACTTTAGGTCCAGGTTCAAGCCTAGGCATGG-TAG  946
      ||||||||||||||||||||| ||||||||||||||||| |||||| |||
seq2  TTGCTTGAAAGGCAGACTTTA-GTCCAGGTTCAAGCCTA-GCATGGTTAG  947

seq1  GAGTGGTAATTTCAGGGACAGGTCCCACCCAGCTTTGCCTGTGCTTAACA  996
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  GAGTGGTAATTTCA-GGACAGGTCCCACCCAGC-TTGCCTGTGCTTAACA  995

seq1  AAG  999
      |||
seq2  AAG  998