BAC Information

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BAC

Clone NameB6Ng01-292K09
Chromosome13 (Build37)
Map Location 26,073,863 - 26,180,826
singlet/doubletdoublet
Overlap genenone
Upstream geneGpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292K09.bB6Ng01-292K09.g
ACCGA089232GA089233
length1,1491,139
definitionB6Ng01-292K09.b B6Ng01-292K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,179,682 - 26,180,826)(26,073,863 - 26,075,007)
sequence
gaattctacatatgcgtttcaatagacacttagaaatatcactgttatat
gaagggcctgataagcattcggctcacacctgaacttcctctaagcgaga
tttagaagatacactagaagactgatcacacaggcttttgaccacattca
agtttactaaagattgagttccagcattctttagctcttctttcctttaa
tccttttgtttctttctaatggaacacttttctttaaagccaagacacat
gcctgttcttctggactgacagcatctgagatctaagcaatatttactgt
ctacaccattcacatttatggaattatcaatactgtgagttttctttttt
ataagaaaggccttagtttgtttatatctgctcaccatttacccaagggc
ataaggattattttctttgagaggcagtacactgatcaataatttttatg
attgtcttgtgaaaaaaatcaccagcattttcctcataataacagtttct
cagctttataaaccctccatccaatataatattgttagactttaggctgc
ccagttattaatcagtgcagcatgcagatgactgttcatacttaaagggc
atttatttttttcttcacttaaaatactctacagaaattaaaagccctgc
atgctagcaaatagccaaaaaagtgttttatgaaacatgatcctaagacc
ccaaagaaaatgtcaggaaagactgtagattagagaacaaaaaaatacac
aacaaattgaaaattaaatatattttgcatattcgatacactatttttct
tgcctcatttgcatgcaaatagggttcaataactgctttaatgtctatat
tcttcccaaaagcaaagaagactcaaaatatatgtgttattttgtatatg
ataaaatgttaatattcgccaaataactacctaatttccatagtgattag
acatgtctgcaataaagcccctttttataaatatacagaaggaacaccag
gaggcagcgaaatttgacaaggtgaaatattaagcaaatctaataaggaa
aattgttatgcaggtgaaagttttctagtacattattttttaatatgact
ttattactatgcagagtaatagtcaaggtcctttagtattcttgagcat

gaattcccaagtctactaacacaatcaagagaatccctcaacggtatgct
tctaggtgagtcacaagtcacactgagctatatccccagcctcacaaata
cttttagagcctggtatatttactatcagtctctaggtagataaaattat
tgtatttccttagtgacagaataaatttcatgcaaagtttatgtaattaa
acttagttatagaataacaacagcaaaatgttacaaaaaaataatagtat
gttgaccagtgtgtccagcaccttcttaacatgtgtaccaggtcctgatt
cagctgaaagctatctgcccacacagggcttggtctactgcatctccata
tttagctgctgtgttatgatgatggaaaacttcccttagccgtgtgcact
ggatattttccctcttggatcagcaatgaattatttagtacttgatttgt
cagagagaagcatggctgcactacactgacagttatgctgtaggaataga
atattattcaagaaattattggtgcaaaaaaaaggcaaccaaaacagaaa
tcagacttagctttccaaatatatacatgcaaaaataacatttatcataa
ttcgagggctttgtgagaagaaattctagcgtgatttgcctttgtaaaac
tgagtttctgttctgtgtgcatctgttggctggtttttccctcgtcctct
tctgtctagccttctggaatgatttcttttaagggcctcactttgttgtc
acttagtttcaagataaatagaatatttttgtctcatcatttccttatta
tctagtccaaaatttcttagtacacaaaattacttatataaggtgctcaa
taacattttcacatgttttataaaaacataattttgatggtattaaaaac
actatcctccctcctttccttctttttctcctcccttttctctctctgcc
tctacctccttctccatttagaactgattgttgttcatgtgttctcccta
tcacacacccaaagagttcttttctttacacttatgattcacatgggatt
tacagtatcattaattaaacaattatcagtgttccaatggccttttgaat
tcagttgacttgtactgtggagactcatacatttacaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26179682_26180826
seq2: B6Ng01-292K09.b_43_1191 (reverse)

seq1  ATGCTC-AGAATACTTAAGGA-CTTGACTTATTACTCTGGCATTAGTAAT  48
      |||||| |||||||| ||||| |||||| ||||||||| ||| |||||||
seq2  ATGCTCAAGAATACTAAAGGACCTTGAC-TATTACTCT-GCA-TAGTAAT  47

seq1  AAAGTCATATT-AAAAATAATGTACTAGAAAACTTTCACCTGCAT-ACAA  96
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  AAAGTCATATTAAAAAATAATGTACTAGAAAACTTTCACCTGCATAACAA  97

seq1  TTTTCCTTATTAGATTTGCTTATTATTTCA-CTTGTCAAATTTCGCTGCC  145
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  TTTTCCTTATTAGATTTGCTTAATATTTCACCTTGTCAAATTTCGCTGCC  147

seq1  T-CTGGTGTTCCTTCTGTATATTTAT-AAAAGGGGCTTTATTGCAGACAT  193
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCCTGGTGTTCCTTCTGTATATTTATAAAAAGGGGCTTTATTGCAGACAT  197

seq1  GTCTAATCACTATGGAAATTAGGTAGTTATTTGGCGAATATTAACATTTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATCACTATGGAAATTAGGTAGTTATTTGGCGAATATTAACATTTT  247

seq1  ATCATATACAAAATAACACATATATTTTGAGTCTTCTTTGCTTTTGGGAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATACAAAATAACACATATATTTTGAGTCTTCTTTGCTTTTGGGAA  297

seq1  GAATATAGACATTAAAGCAGTTATTGAACCCTATTTGCATGCAAATGAGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAGACATTAAAGCAGTTATTGAACCCTATTTGCATGCAAATGAGG  347

seq1  CAAGAAAAATAGTGTATCGAATATGCAAAATATATTTAATTTTCAATTTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAATAGTGTATCGAATATGCAAAATATATTTAATTTTCAATTTG  397

seq1  TTGTGTATTTTTTTGTTCTCTAATCTACAGTCTTTCCTGACATTTTCTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTTTTTTGTTCTCTAATCTACAGTCTTTCCTGACATTTTCTTT  447

seq1  GGGGTCTTAGGATCATGTTTCATAAAACACTTTTTTGGCTATTTGCTAGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTAGGATCATGTTTCATAAAACACTTTTTTGGCTATTTGCTAGC  497

seq1  ATGCAGGGCTTTTAATTTCTGTAGAGTATTTTAAGTGAAGAAAAAAATAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGGCTTTTAATTTCTGTAGAGTATTTTAAGTGAAGAAAAAAATAA  547

seq1  ATGCCCTTTAAGTATGAACAGTCATCTGCATGCTGCACTGATTAATAACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTTAAGTATGAACAGTCATCTGCATGCTGCACTGATTAATAACT  597

seq1  GGGCAGCCTAAAGTCTAACAATATTATATTGGATGGAGGGTTTATAAAGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCCTAAAGTCTAACAATATTATATTGGATGGAGGGTTTATAAAGC  647

seq1  TGAGAAACTGTTATTATGAGGAAAATGCTGGTGATTTTTTTCACAAGACA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACTGTTATTATGAGGAAAATGCTGGTGATTTTTTTCACAAGACA  697

seq1  ATCATAAAAATTATTGATCAGTGTACTGCCTCTCAAAGAAAATAATCCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAAAATTATTGATCAGTGTACTGCCTCTCAAAGAAAATAATCCTT  747

seq1  ATGCCCTTGGGTAAATGGTGAGCAGATATAAACAAACTAAGGCCTTTCTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTGGGTAAATGGTGAGCAGATATAAACAAACTAAGGCCTTTCTT  797

seq1  ATAAAAAAGAAAACTCACAGTATTGATAATTCCATAAATGTGAATGGTGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAGAAAACTCACAGTATTGATAATTCCATAAATGTGAATGGTGT  847

seq1  AGACAGTAAATATTGCTTAGATCTCAGATGCTGTCAGTCCAGAAGAACAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTAAATATTGCTTAGATCTCAGATGCTGTCAGTCCAGAAGAACAG  897

seq1  GCATGTGTCTTGGCTTTAAAGAAAAGTGTTCCATTAGAAAGAAACAAAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTCTTGGCTTTAAAGAAAAGTGTTCCATTAGAAAGAAACAAAAG  947

seq1  GATTAAAGGAAAGAAGAGCTAAAGAATGCTGGAACTCAATCTTTAGTAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGAAAGAAGAGCTAAAGAATGCTGGAACTCAATCTTTAGTAAA  997

seq1  CTTGAATGTGGTCAAAAGCCTGTGTGATCAGTCTTCTAGTGTATCTTCTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATGTGGTCAAAAGCCTGTGTGATCAGTCTTCTAGTGTATCTTCTA  1047

seq1  AATCTCGCTTAGAGGAAGTTCAGGTGTGAGCCGAATGCTTATCAGGCCCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCGCTTAGAGGAAGTTCAGGTGTGAGCCGAATGCTTATCAGGCCCT  1097

seq1  TCATATAACAGTGATATTTCTAAGTGTCTATTGAAACGCATATGTAGAAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAACAGTGATATTTCTAAGTGTCTATTGAAACGCATATGTAGAAT  1147

seq1  TC  1145
      ||
seq2  TC  1149


seq1: chr13_26073863_26075007
seq2: B6Ng01-292K09.g_66_1204

seq1  GAATTCCCAAGTCTACTAACACAATCAAGAGAATCCCTCAACGGTATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGTCTACTAACACAATCAAGAGAATCCCTCAACGGTATGCT  50

seq1  TCTAGGTGAGTCACAAGTCACACTGAGCTATATCCCCAGCCTCACAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTGAGTCACAAGTCACACTGAGCTATATCCCCAGCCTCACAAATA  100

seq1  CTTTTAGAGCCTGGTATATTTACTATCAGTCTCTAGGTAGATAAAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAGCCTGGTATATTTACTATCAGTCTCTAGGTAGATAAAATTAT  150

seq1  TGTATTTCCTTAGTGACAGAATAAATTTCATGCAAAGTTTATGTAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCCTTAGTGACAGAATAAATTTCATGCAAAGTTTATGTAATTAA  200

seq1  ACTTAGTTATAGAATAACAACAGCAAAATGTTACAAAAAAATAATAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTTATAGAATAACAACAGCAAAATGTTACAAAAAAATAATAGTAT  250

seq1  GTTGACCAGTGTGTCCAGCACCTTCTTAACATGTGTACCAGGTCCTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCAGTGTGTCCAGCACCTTCTTAACATGTGTACCAGGTCCTGATT  300

seq1  CAGCTGAAAGCTATCTGCCCACACAGGGCTTGGTCTACTGCATCTCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAAAGCTATCTGCCCACACAGGGCTTGGTCTACTGCATCTCCATA  350

seq1  TTTAGCTGCTGTGTTATGATGATGGAAAACTTCCCTTAGCCGTGTGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGCTGTGTTATGATGATGGAAAACTTCCCTTAGCCGTGTGCACT  400

seq1  GGATATTTTCCCTCTTGGATCAGCAATGAATTATTTAGTACTTGATTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTTCCCTCTTGGATCAGCAATGAATTATTTAGTACTTGATTTGT  450

seq1  CAGAGAGAAGCATGGCTGCACTACACTGACAGTTATGCTGTAGGAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAGCATGGCTGCACTACACTGACAGTTATGCTGTAGGAATAGA  500

seq1  ATATTATTCAAGAAATTATTGGTGCAAAAAAAAGGCAACCAAAACAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTCAAGAAATTATTGGTGCAAAAAAAAGGCAACCAAAACAGAAA  550

seq1  TCAGACTTAGCTTTCCAAATATATACATGCAAAAATAACATTTATCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTAGCTTTCCAAATATATACATGCAAAAATAACATTTATCATAA  600

seq1  TTCGAGGGCTTTGTGAGAAGAAATTCTAGCGTGATTTGCCTTTGTAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGGCTTTGTGAGAAGAAATTCTAGCGTGATTTGCCTTTGTAAAAC  650

seq1  TGAGTTTCTGTTCTGTGTGCATCTGTTGGCTGGTTTTTCCCTCGTCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCTGTTCTGTGTGCATCTGTTGGCTGGTTTTTCCCTCGTCCTCT  700

seq1  TCTGTCTAGCCTTCTGGAATGATTTCTTTTAAGGGCCTCACTTTGTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTAGCCTTCTGGAATGATTTCTTTTAAGGGCCTCACTTTGTTGTC  750

seq1  ACTTAGTTTCAAGATAAATAGAATATTTTTGTCTCATCATTTCCTTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTTTCAAGATAAATAGAATATTTTTGTCTCATCATTTCCTTATTA  800

seq1  TCTAGTCCAAAATTTCTTAGTACACAAAATTACTTATATAAGGTGCTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCCAAAATTTCTTAGTACACAAAATTACTTATATAAGGTGCTCAA  850

seq1  TAACATTTTCACATGTTTTATAAAAACATAATTTTGATGGTATTAAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTCACATGTTTTATAAAAACATAATTTTGATGGTATTAAAAAC  900

seq1  ACTATCCT-CCTCCTTTCCTTCTTTTTCTTCCTCCCTTTTCTCTCTCTGC  949
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  ACTATCCTCCCTCCTTTCCTTCTTTTTC-TCCTCCCTTTTCTCTCTCTGC  949

seq1  CTCTACCTCCTTCTCCATTTAGAACTGATTG-TGTTCATGTGTTCTCCCT  998
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCTACCTCCTTCTCCATTTAGAACTGATTGTTGTTCATGTGTTCTCCCT  999

seq1  ATTCACACACCCAAAGAGT--CTTTCTTTACAACTTATGAATCACAT-GG  1045
      | |||||||||||||||||   ||||||||| |||||||| |||||| ||
seq2  A-TCACACACCCAAAGAGTTCTTTTCTTTAC-ACTTATGATTCACATGGG  1047

seq1  ATTTACAGTTAATCCAATTAATTAAACAA-TATCAGTGTTCCAAATGGCC  1094
      |||||||||  |||  ||||||||||||| |||||||||||| |||||||
seq2  ATTTACAGT--ATC--ATTAATTAAACAATTATCAGTGTTCC-AATGGCC  1092

seq1  TTTTGAAATTTCAGTTGACTGGGTAACTGTGGAAGACTCATACA-TTACA  1143
      |||||||  ||||||||||| |   ||||||| ||||||||||| |||||
seq2  TTTTGAA--TTCAGTTGACTTG--TACTGTGG-AGACTCATACATTTACA  1137

seq1  AC  1145
      ||
seq2  AC  1139


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