BAC Information

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BAC

Clone NameB6Ng01-293P16
Chromosome13 (Build37)
Map Location 62,625,847 - 62,648,636
singlet/doubletdoublet
Overlap gene6720457D02Rik, EG665503
Upstream geneLOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455
Downstream geneLOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293P16.bB6Ng01-293P16.g
ACCGA090227GA090228
length1,1351,065
definitionB6Ng01-293P16.b B6Ng01-293P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,647,525 - 62,648,636)(62,625,847 - 62,626,885)
sequence
gaattcatgctgtttcctaggctgggtcttctttgggcatcagccagagc
tgaataagtgatctctccctgggaaagatgttaattccacaccagctgta
cctgcaggctttaaataatgtttctgagacaagctttcctatgtcgagtc
aggtagcattcattccactctgtatttcccaggacaatgacattggcttc
tattgactaaaccaactaaatacttaagtctaaatcactaccaccaccat
gtttttaaattacttgctgagtcatgtatgtaatcaacttttttattaca
gtaagaggaacaggatttgcatgaagggcatggcttctgcattcacacca
gaagagaagagagttttttgcgatccctactggggaaacagggtaggcaa
tcagctgctggagttgccattatgaacaagacctgattatggcagggagg
tgatttttaattttggatcatgtattaatcatgttctgtgatgaagacag
cctatattgatgggtgtttgatttgtgaacgtcagttaagccaatgagta
ttcaatttgcatgtagggtactgttctacagatacatgtgcaatcttaac
tgacatcattaagtcagctcaggaattgaaacccaggccatcgggtatag
ttgtgtgtgtgtcaagttgtgtgtcaagttacaggtgtcagcagctaaga
gtccacatagaggcaagttcaagtagtgtttgattaatgctattcctgat
gtgaggatatgggctgctagttttgaatgtcagtgtgactatgtggtctt
ttagtaatatttaagtttgaaaaaaatcaattattggttcccctttcaat
gtaatttctgtgaattctgcactgctctgatctcttactatttgcaattc
tgtggtgtttcccaggtataagaatttctttttattatttttaccaaagg
gcagtttaggacaaggtctcttgatggccaaaggctgggcttcatgctat
tgtaatttgataaactgcttttgaacatctgggtcctgtcccttaaggcc
acatgaatgggagacagtgcctgcatgtctttcttagccctaggctttga
aggggaaagtttttcctgggttttggcatgtactt
gaattccacatatggtgtcatcaataagtccttttaggttcagcccccaa
gttatactttgaataatttactgggggacaggacattgcaagtcactgag
gctgatgcagatttacagagcaaaactatcttctagtccataatgtaaga
tctagaaaagaggttttgttgttattgttgttgttatttgtttttttgtt
ttgttttgttttgtattttcatgacagggtttctctgtatagccctggct
gtcctggatctcaatttgtagaccagggtagccttgatctcagaaatctc
cctgcctatgcctatcaagtgctgaaattaaaggcgtgtgccaccactac
ccggcttagaaaagagttttaaaagataagattcatgccagaactctccc
atacataaaggacagagaacacaaatacagaaaatatcaaggacacatca
cctaacagcactgtggttatggttctacatgatcatgtctgctgaccttc
tctaacctcagaataagactgtttgaaggttctgactcacccacctgtct
gtccatccatccatccatccatccatccatccatccatccatccatctat
tcatccatccattcatccaaatatatgggtgtagctattttccactttgc
ccagtgtatatgtgtctgtgtgagtgactcctttccactcctctcctctc
tctcttgaagaaagttaacaaactccctcgccagaaagtagcttctagca
ataaaaacttgtatttaatactccccaggctaaccagcaggttttaatcc
ccagatattagtgtttatttatgtagaaataataaagagttaagttgata
gcaatactaagacataacagacgtaaagagttaattaaaaaaatagtttt
ctccagcactttatggtaccacagaaattaatgagaaagaatgtagaatt
ttaccaccaagattataaagaaagaggtaagaattccccagccacggtca
tgaaagcacagggacagtcaataaagttaagaaaggagtttagtttttca
gagccttaattaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62647525_62648636
seq2: B6Ng01-293P16.b_46_1180 (reverse)

seq1  AAGTAC-TGCCAAA--CCAGG-AAAACTTTCCCCTTCAAAGCCTA-GGCT  45
      |||||| |||||||  ||||| ||||||||||||||||||||||| ||||
seq2  AAGTACATGCCAAAACCCAGGAAAAACTTTCCCCTTCAAAGCCTAGGGCT  50

seq1  A--GAAGACATGCA-GCACTGTCTTTCCATCATGTGGTCTT-AGGGACAG  91
      |   |||||||||| |||||||||  |  |||||||| ||| ||||||||
seq2  AAGAAAGACATGCAGGCACTGTCTCCCATTCATGTGGCCTTAAGGGACAG  100

seq1  GA-CCAGATGTTC-AAAGCAG-TTATC-AATTAC-ATAGCATGA--GCCA  134
      || |||||||||| ||||||| ||||| |||||| |||||||||   |||
seq2  GACCCAGATGTTCAAAAGCAGTTTATCAAATTACAATAGCATGAAGCCCA  150

seq1  GCC--TGGGCATCAAGAGACCTTGTCCTAAACTGCCCTT--GTACAA--T  178
      |||  ||| ||||||||||||||||||||||||||||||  ||| ||   
seq2  GCCTTTGGCCATCAAGAGACCTTGTCCTAAACTGCCCTTTGGTAAAAATA  200

seq1  ATGAAAAGAAATTCTTATACCTGGGAAATACAACAGAATTGCAAATAGTA  228
      || ||||||||||||||||||||||||| || ||||||||||||||||||
seq2  ATAAAAAGAAATTCTTATACCTGGGAAACACCACAGAATTGCAAATAGTA  250

seq1  AGAGATCAGAGCAGTGCTGAATTCATAGAAATTACATTGAAAGGGGAACC  278
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  AGAGATCAGAGCAGTGCAGAATTCACAGAAATTACATTGAAAGGGGAACC  300

seq1  AATAATTGA-TTTTTTCCAACTTAAATATTACTAAAAAACCACATAGCCA  327
      ||||||||| ||||||| ||||||||||||||||||| ||||||||| ||
seq2  AATAATTGATTTTTTTCAAACTTAAATATTACTAAAAGACCACATAGTCA  350

seq1  TACTGACATTCAAAACTAGCAGCCCATATCCTCACATCAGGAATAGCATT  377
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACATTCAAAACTAGCAGCCCATATCCTCACATCAGGAATAGCATT  400

seq1  AATCAAACACTACTTGAACTTGCCTCTATGTGGACTCTTAGTTGCTGACA  427
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATCAAACACTACTTGAACTTGCCTCTATGTGGACTCTTAGCTGCTGACA  450

seq1  CCTGTAACTTGACACACAACTTGACACACACACAACTACACCCGATGGCC  477
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTGTAACTTGACACACAACTTGACACACACACAACTATACCCGATGGCC  500

seq1  TGGGATTCAATTCTTGTGCTGACTTAATGATGTCAGTGAAGATTGCACAT  527
      |||| |||||||| || |||||||||||||||||||| ||||||||||||
seq2  TGGGTTTCAATTCCTGAGCTGACTTAATGATGTCAGTTAAGATTGCACAT  550

seq1  GTATCTGTAGAACAGTACCCTACGTGCAAATTGAATGCTCATTGGCTTAA  577
      ||||||||||||||||||||||| |||||||||||| |||||||||||||
seq2  GTATCTGTAGAACAGTACCCTACATGCAAATTGAATACTCATTGGCTTAA  600

seq1  CTGACATTCACAACTCAAACACCCATCAATATAGGCTGTCTTCATCACAG  627
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGACGTTCACAAATCAAACACCCATCAATATAGGCTGTCTTCATCACAG  650

seq1  AACATGATTAATACATGATCCAAAATTAAAAATCACCTCCCTGCCATAAT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGATTAATACATGATCCAAAATTAAAAATCACCTCCCTGCCATAAT  700

seq1  CAGGTCTTGTTCATAATGGCAACTCCAGCAGCTGATTGCCTACCCTGTTT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTGTTCATAATGGCAACTCCAGCAGCTGATTGCCTACCCTGTTT  750

seq1  CCCCAGTAGGGATCGCAATAAACTCTCTTCTCTTCTGATGTGAATGCAGA  777
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  CCCCAGTAGGGATCGCAAAAAACTCTCTTCTCTTCTGGTGTGAATGCAGA  800

seq1  AGCTATGCCCTTCATGCAAATCCTGTTCCTCTTACTGTAATAAAAAACTT  827
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCCATGCCCTTCATGCAAATCCTGTTCCTCTTACTGTAATAAAAAAGTT  850

seq1  GATTACATACATGACTCAGCAAGTAATTTAAAAACACAGTGGTGTTAGTG  877
      ||||||||||||||||||||||||||||||||||||  |||||| |||||
seq2  GATTACATACATGACTCAGCAAGTAATTTAAAAACATGGTGGTGGTAGTG  900

seq1  ATTTAGACTTAAGTATTTAGTTGGTTTAGTCAATAGAAGCCAATGTCATT  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACTTAAGTATTTAGTTGGTTTAGTCAATAGAAGCCAATGTCATT  950

seq1  GTCCTGGGAAATACAGAGTGGAATGAATGCTACCTGACTCGACACAGGAA  977
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCCTGGGAAATACAGAGTGGAATGAATGCTACCTGACTCGACATAGGAA  1000

seq1  AGCTTGTCTCAGAAACATTATTTAAATCCTGGAGGTACAGCTGGTGTGGA  1027
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  AGCTTGTCTCAGAAACATTATTTAAAGCCTGCAGGTACAGCTGGTGTGGA  1050

seq1  ATTAACATCTTTCCCAGGGAGAGATCACTTATTCAGCTCGGGCTGATGCC  1077
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTAACATCTTTCCCAGGGAGAGATCACTTATTCAGCTCTGGCTGATGCC  1100

seq1  CAAAGAAGACCCAGCCTAGGAAACAGTATGAATTC  1112
      |||||||||||||||||||||||||| ||||||||
seq2  CAAAGAAGACCCAGCCTAGGAAACAGCATGAATTC  1135

seq1: chr13_62625847_62626885
seq2: B6Ng01-293P16.g_68_1132

seq1  GAATTCCACATATGGTGTCATCAATAAGTCCTTTTAGGTTCAGCCCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAATTCCACATATGGTGTCATCAATAAGTCCTTTTAGGTTCAGCCCCCAA  50

seq1  GTTACACTTTGAATAATTTACTGGGGGACAGGACATTGCAAGTCACTGAG  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACTTTGAATAATTTACTGGGGGACAGGACATTGCAAGTCACTGAG  100

seq1  GCTGATGGAGATTTACAGAGCAAAACTATCTGCTAGTCTATAATGTAAGA  150
      ||||||| ||||||||||||||||||||||| |||||| |||||||||||
seq2  GCTGATGCAGATTTACAGAGCAAAACTATCTTCTAGTCCATAATGTAAGA  150

seq1  TCTAGAAAAGAGGTTTTGTTGTTATTGTTGTTGTTATTTGGTTTTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTAGAAAAGAGGTTTTGTTGTTATTGTTGTTGTTATTT-GTTTTTTTGT  199

seq1  TTTGTTTTGTTTTGTATTTTCATGACAGGATTTCTCTGTATAGCCCTGGC  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTATTTTCATGACAGGGTTTCTCTGTATAGCCCTGGC  249

seq1  TGTCCTGGATCTCAATTCGTAGACCAGGGTAGCCTTGATCTCAGAAATCT  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTCCTGGATCTCAATTTGTAGACCAGGGTAGCCTTGATCTCAGAAATCT  299

seq1  CCCTGCCTATGCCTATCAAGTGCTGAAATTAAAGGCGTGTGCCACCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTATGCCTATCAAGTGCTGAAATTAAAGGCGTGTGCCACCACTA  349

seq1  CCCGGCTTAGAAAAGAGTTTTAAAAGATAAGATTCATGCCAGAACTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCTTAGAAAAGAGTTTTAAAAGATAAGATTCATGCCAGAACTCTCC  399

seq1  CATACATAAAGGACAGAGAACACAAATACAGAAAATATCAAGGACACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAAAGGACAGAGAACACAAATACAGAAAATATCAAGGACACATC  449

seq1  ACCTAACAGCACTGTGGTTATGGTTCTACATAATCATGTCTGATGACCTT  500
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  ACCTAACAGCACTGTGGTTATGGTTCTACATGATCATGTCTGCTGACCTT  499

seq1  CTCTAACCTCAGAATAAGACCGTTTTAAGGTTCTGACTCACCCAC-----  545
      |||||||||||||||||||| |||| |||||||||||||||||||     
seq2  CTCTAACCTCAGAATAAGACTGTTTGAAGGTTCTGACTCACCCACCTGTC  549

seq1  ---CCGTCCGTCCATCCATCCATCCATCCATCCATCCATCCATCCATCTA  592
         || ||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCTA  599

seq1  TTCATCCATCCATTCATCCAAATATATGGGTGTAGCTATTTTCCACTTTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCATCCATTCATCCAAATATATGGGTGTAGCTATTTTCCACTTTG  649

seq1  CCCAGTGTATATGTGTCTGTGTGAGTGACTCCTTTCCTCTCCTCTCCTCT  692
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCCAGTGTATATGTGTCTGTGTGAGTGACTCCTTTCCACTCCTCTCCTCT  699

seq1  CTCTCTTGAAGAGAGTTAACAAACTCCCTCGCCAGAAAGTAGCTTCTAGC  742
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGAAGAAAGTTAACAAACTCCCTCGCCAGAAAGTAGCTTCTAGC  749

seq1  AATAAAAACTTGTATTTAATATTCCCCAGGCTAACCAGCAGATTTTAATC  792
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  AATAAAAACTTGTATTTAATACTCCCCAGGCTAACCAGCAGGTTTTAATC  799

seq1  CCCAGATATTAGTGTTTATTTATGTAGAAATAATAAAGAGTTAAGTTTAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCAGATATTAGTGTTTATTTATGTAGAAATAATAAAGAGTTAAGTTGAT  849

seq1  AGCAATACTAAGACATAACAGACGTAAAGAGTTAAT--AAAGAATAG-TT  889
      ||||||||||||||||||||||||||||||||||||  ||| ||||| ||
seq2  AGCAATACTAAGACATAACAGACGTAAAGAGTTAATTAAAAAAATAGTTT  899

seq1  TCTCCAGCACTTAAT-GTACCACAGAA--TAATGAGAAAGAATGTAG-AT  935
      |||||||||||| || |||||||||||  |||||||||||||||||| ||
seq2  TCTCCAGCACTTTATGGTACCACAGAAATTAATGAGAAAGAATGTAGAAT  949

seq1  TTTACCA-CAAGATTAT-AAGAAAGAGGTAAG-ATTCCCCAG-CACGG-C  980
      ||||||| ||||||||| |||||||||||||| ||||||||| ||||| |
seq2  TTTACCACCAAGATTATAAAGAAAGAGGTAAGAATTCCCCAGCCACGGTC  999

seq1  ATG-AAGCACA-GGACAGTC-ATAAAGTTAAG-AAGGAGTTAAG-TTTTC  1025
      ||| ||||||| |||||||| ||||||||||| |||||||| || |||||
seq2  ATGAAAGCACAGGGACAGTCAATAAAGTTAAGAAAGGAGTTTAGTTTTTC  1049

seq1  AGAG-CTTAA-TAAAG  1039
      |||| ||||| |||||
seq2  AGAGCCTTAATTAAAG  1065