BAC Information

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BAC

Clone NameB6Ng01-297K07
Chromosome13 (Build37)
Map Location 70,302,243 - 70,303,381
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291
Downstream gene4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297K07.bB6Ng01-297K07.g
ACCGA092952GA092953
length1,2411,150
definitionB6Ng01-297K07.b B6Ng01-297K07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccactgtgaatgtcatcttgtctgggctctagacatatcctgg
ggaagctgtgactcacctagtgtgcagaaacaccttgcttgcaaatgcat
cttagattctagcccttctgcagcatctagtgtctgctgggatgcaggct
cagccatgttcttagtttcccaaggagtgcctttagcatccatcaagtgc
atagacaatgccaagattaacgttattaatacagaggatttgcagtatca
agaatggattctcaaagctttataatgtaatgatccaagtggggcttcct
aatgacacaggcatgttaaggaaaatgagtgtgacattctcctgcttgac
acaagggaggattccagtgtgcaaagggaatcatctacataggtacccga
tggccactattatgtctatgccccagatccttggactttggcacaaagac
ctcaatagaattcattgatatgaacacacagtgctgccatagaagccaag
tggtcatctcctgtgggaccgtgaaaggcagcctgttttggttgaatgag
gcttgctccggagacccagtagaaaactctacatgggatggaacagtgag
ccacattcccagagacaggtgcctgacaccacagagcctccaactctatt
attctgtaactataagttactcagacaaagccccaagttcctggcattgt
ggttagactccacctccacagttacctgacaatagccaggtatgctcctc
cccacagttacctggcaacaacaaggtagcccagcccactataaaaggag
ctgctcagcccctcctctctctcttaggttctcacctttcttactcacag
gtctagctctccttttccccctctcttccccacattctttccacatggcc
atggtcgtcccctctcttttaccttctctgtttctctctgcctttctgca
ataaagctctaaaaccatagactgtctcttctatcaagtaccgcagtgct
tgaatgataggatagctttcccctaaagagcagcgttctaacctaccacc
agaagccttcctgagcccccagccatggagggaaccaaacactctctcac
agtggtgggaattcctcccaggcccacttcttcccttggtccaagatgac
ggacctgcccccaggcccttaattgttccagctctctgcaacttacactt
ctgaatgccttgaacacgaagaaacctgcgcaatagtgtcg
gaattcacccaggagcccgtcttttagggtggagactttgtacccgaatg
ggcacctgtctggattgctgaaatctacttgtgtgtcttgtgcctgtact
taagagggctctgcaaccctagaatctctgaacaggtcttttctgagtgt
gcatcacaggaagaaggttctagccagtgtaccaaggtcaaaggtgttcc
atatacaacttctgctattgcaagcagcatgcttctgctttgtgtgtgtg
tgtgtattagttgctcttacaaagtacccaacaaaagcaacttaagtaaa
gaagagtctattttgagagaacaatgaagcagctgcccagctcatttcct
gtaggtcctagcccaaggagtgtacgatgtcatcctcatattgtttgggt
ttcactaccttaactaacctaacgaaaataatccctcatatacctgcctg
aagcctgattcccattgtgagtataagtctcatcgagttgaaaagtgaga
ttaaccattgcagcatgtgtgatcttgggcagtggagcaagatcatccat
ctctttcatatctgaaactcaaagtacctccacctgaaaaaccctgctat
tatctcttcttgatatttcctaccttctattttttttttaattgtagttg
gctgtggcatgagcttccaggttgtgaatcttagtccacaactgactggc
tgtttctgcagattgattcctaataatggctttcagtagcttttgataaa
gtagactctagccaggcagacctgggacaattctagatgaacgatggaga
agatacaattaggtataggactatagttgggctttgccagtgggcacaga
gttatcatttagggggacaactgggctttgtctgtgtcctacagactttt
ctatgtccttgactttggggtgggagggctgctttactacattagttagg
aaatcttgagagaaacagatcaagtagattgtgtgtatgtgttgtgtaat
acatgtgggtttttatctaaggaattatttattatggagataggtctaga
catgactggcaattagctgtaagattttgcagtaagagcttgtactgtca
tgtggaactctcaaggtcttggtcttgaacaccagtcctgaaagatggct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_70302243_70303381
seq2: B6Ng01-297K07.g_68_1217

seq1  GAATTCACCCAGGAGCCCGTCTTTTAGGGTGGAGACTTTGTACCCGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCAGGAGCCCGTCTTTTAGGGTGGAGACTTTGTACCCGAATG  50

seq1  GGCACCTGTCTGGATTGCTGAAATCTACTTGTGTGTCTTGTGCCTGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTGTCTGGATTGCTGAAATCTACTTGTGTGTCTTGTGCCTGTACT  100

seq1  TAAGAGGGCTCTGCAACCCTAGAATCTCTGAACAGGTCTTTTCTGAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGGCTCTGCAACCCTAGAATCTCTGAACAGGTCTTTTCTGAGTGT  150

seq1  GCATCACAGGAAGAAGGTTCTAGCCAGTGTACCAAGGTCAAAGGTGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACAGGAAGAAGGTTCTAGCCAGTGTACCAAGGTCAAAGGTGTTCC  200

seq1  ATATACAACTTCTGCTATTGCAAGCAGCATGCTTCTGCTTTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAACTTCTGCTATTGCAAGCAGCATGCTTCTGCTTTGTGTGTGTG  250

seq1  TGTGTATTAGTTGCTCTTACAAAGTACCCAACAAAAGCAACTTAAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTAGTTGCTCTTACAAAGTACCCAACAAAAGCAACTTAAGTAAA  300

seq1  GAAGAGTCTATTTTGAGAGAACAATGAAGCAGCTGCCCAGCTCATTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCTATTTTGAGAGAACAATGAAGCAGCTGCCCAGCTCATTTCCT  350

seq1  GTAGGTCCTAGCCCAAGGAGTGTACGATGTCATCCTCATATTGTTTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCCTAGCCCAAGGAGTGTACGATGTCATCCTCATATTGTTTGGGT  400

seq1  TTCACTACCTTAACTAACCTAACGAAAATAATCCCTCATATACCTGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTACCTTAACTAACCTAACGAAAATAATCCCTCATATACCTGCCTG  450

seq1  AAGCCTGATTCCCATTGTGAGTATAAGTCTCATCGAGTTGAAAAGTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGATTCCCATTGTGAGTATAAGTCTCATCGAGTTGAAAAGTGAGA  500

seq1  TTAACCATTGCAGCATGTGTGATCTTGGGCAGTGGAGCAAGATCATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCATTGCAGCATGTGTGATCTTGGGCAGTGGAGCAAGATCATCCAT  550

seq1  CTCTTTCATATCTGAAACTCAAAGTACCTCCACCTGAAAAACCCTGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCATATCTGAAACTCAAAGTACCTCCACCTGAAAAACCCTGCTAT  600

seq1  TATCTCTTCTTGATATTTCCTACCTTCTATTTTTTTTTTAATTGTAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTCTTGATATTTCCTACCTTCTATTTTTTTTTTAATTGTAGTTG  650

seq1  GCTGTGGCATGAGCTTCCAGGTTGTGAATCTTAGTCCACAACTGACTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGCATGAGCTTCCAGGTTGTGAATCTTAGTCCACAACTGACTGGC  700

seq1  TGTTTCTGCAGATTGATTCCTAATAATGGCTTTCAGTAGCTTTTGATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGCAGATTGATTCCTAATAATGGCTTTCAGTAGCTTTTGATAAA  750

seq1  GTAGACTCTAGCCAGGCAGACCTGGGACAATTCTAGATGAACGATGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTCTAGCCAGGCAGACCTGGGACAATTCTAGATGAACGATGGAGA  800

seq1  AGATACAATTAGGTATAGGACTATAGTTGGGC-TTGCCAGTGGGCACAGA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGATACAATTAGGTATAGGACTATAGTTGGGCTTTGCCAGTGGGCACAGA  850

seq1  GTTATCA-TTAGGGGGACAACTGGGCTTTGTCTGTGTCCTACAGACTTTT  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATTTAGGGGGACAACTGGGCTTTGTCTGTGTCCTACAGACTTTT  900

seq1  CTATGTCCTTGACTT--GGGT-GGAGGGCTGCTTTACTACATTAGTTAGG  945
      |||||||||||||||  |||| ||||||||||||||||||||||||||||
seq2  CTATGTCCTTGACTTTGGGGTGGGAGGGCTGCTTTACTACATTAGTTAGG  950

seq1  -AATCTTGAGAGAAACAGAACCAGTAGATTGTGTGTATGTG-TGTGT-AT  992
       |||||||||||||||||| | ||||||||||||||||||| ||||| ||
seq2  AAATCTTGAGAGAAACAGATCAAGTAGATTGTGTGTATGTGTTGTGTAAT  1000

seq1  ACATGTGGG-TTTTATCTTAAGGAATTA-TTATTATGGAGATA-GTCAAG  1039
      ||||||||| ||||||| |||||||||| |||||||||||||| ||| ||
seq2  ACATGTGGGTTTTTATC-TAAGGAATTATTTATTATGGAGATAGGTCTAG  1049

seq1  ACATGACTGGGAAATAGGCTG-AAGATTTTGCCAAGAAGAGCTGGTACTG  1088
      |||||||||| || || |||| ||||||||| ||  ||||||| ||||||
seq2  ACATGACTGGCAATTA-GCTGTAAGATTTTG-CAGTAAGAGCTTGTACTG  1097

seq1  -CA-GTGGGACTCT-AAGGTCTTTGTGTCTTGGACA-CAG-CCTGAGAAG  1133
       || |||| ||||| ||||||||   |||||| ||| ||| ||||| |||
seq2  TCATGTGGAACTCTCAAGGTCTT--GGTCTTGAACACCAGTCCTGA-AAG  1144

seq1  ATGGCT  1139
      ||||||
seq2  ATGGCT  1150