BAC Information

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BAC

Clone NameB6Ng01-298G06
Chromosome13 (Build37)
Map Location 25,138,206 - 25,309,605
singlet/doubletdoublet
Overlap geneDcdc2a
Upstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430
Downstream geneNrsn1, Tpi-rs8, LOC214973, LOC666221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298G06.bB6Ng01-298G06.g
ACCGA093508GA093509
length1,1301,131
definitionB6Ng01-298G06.b B6Ng01-298G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,138,206 - 25,139,099)(25,308,472 - 25,309,605)
sequence
gaattctacctgtttggttgtgttttcctgtttttctttaaggacttgta
actctttagcagtgttctcctgtatttctttaagtgagttattacattcc
ttctttatgtcctctaccatcatcatgagatatgcttttaaattcaggtt
taccttttcaggtgtgttagggtgccctggactgggcgaagtgggcgttc
tgggttctgatgatggtgagtggtcctggtttctgttagtaggattctta
tgtttaccttttgccatctggcaatctctggagttagttattatagttgt
ctttgtttagagattgttcctctgttgattttgttaccctctatcagcag
acgtgggagactagctctctcctctgagtttcagtggtcagagcagtctc
tgcaggcaagctctgctctttcagggaaggtgcacagttatctggtgttt
ggacctcctcctggctgaagatgaaggcccaaaacaggatctttcccaga
agctgtgttgctttggccaggaaggtggccagttgtctggagctgaagat
ggcgccgcctcagaagctctctggctctcgcctgtctcagaaactgctgg
cctctgtattccacaccctcagccgtgcagcctgccctccgcagagtccc
ggagccaaggtggctccagccggagcctgaggcagaaacctctcgggccg
ggctgacccctgtgctctcaccaggaaggtggccggttgtctgtcttgcc
agatttttatataagggctatgctaggttcagaaagaattagtattagat
tgaaattatagtttataatttatagtttataaacgcttggcagaacttac
cagtcaaacagtggagtcttgcttttgttttatttaggtttgagactttc
tgtgtttacagaacactctcatccttttcaagtttattagcataggcatt
ccacagcgtaattcttaatcttaaagtctgagcagctatatgtgttgctg
catcgtccctgttctccacatgtctaatgccatttttttttaactttcgt
ttttttaggatacagtcttactctttgtagtcagtctaacatgtactggg
agcatctgcctgtctcagctttctgagtgc
gaattccaaactggaatggtggttgttatataacagtcgtttcgttcttc
aagctgaagtggtgggtgtggcagacaggcgatcctgaaagcatcatgtg
actgttgtagaattaaactcggttggcaagggaagaagctgaaaagcctc
aactgaggcccagtgtgggcaactcaaaccactgatgcagagaaattcag
agggtccaagagcaagtatgaatccttacaacaccaacacacatacctct
gggtggttattgaatatacagatgagatgcaatacatgaagttgtatgtc
aggctgcatgcaactaagcattgcagaaaagccagtgctgggccaatgag
tcaaagcatcaagtctgtacagcagagcctttgttttgcctggctctctc
atgctttggcccatttactctctcggatatgtatcttcttgtctgctgcc
tctgatttggctacaaatacatgtccccaatcaaccatttgttccaggac
acaagaacctgaaacccctctacaggtaccctgggacttcagatatcaac
aagaatcaggaccataaaacatctagggctctcacaaagtgaaatgggaa
acctctcctgagatagttccagaaaccagagtatgaggggcctcgtgcaa
ataacaagtacacagatgagctcacaagtttaaaagtgcaagctacgcac
aggcaggatcttctgccaagtcagatgcacaggcaggaagcacagacaat
cacttcagaagtgtgtttgtcatcaaacacctaaacatatgaagttctat
gatgtgattgtcaatacgattatcaacctgacaggctccagattcatgga
ggagacaagctttcctgcaacacctgagagagattctgtagacaagctca
acctctggccgtgggtatgcttgagtttaacagaagtgagaagaccactt
acctttcttgcagtgacccagctaaggaaagggacagctttgcttcgcag
cttgtcttcccacttggcgagtttgtcatcctgctctgccacactgcttg
ccttccttccctgacatcagacccagcttcacagctttcagtgtagaccc
acttaagatcagtgaccatccaggaatcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25138206_25139099
seq2: B6Ng01-298G06.b_289_1175

seq1  ATTCTTATGTTTACCTTTTGCCATCTGGCAATCTCTGGAGTTAGTTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATGTTTACCTTTTGCCATCTGGCAATCTCTGGAGTTAGTTATTA  50

seq1  TAGTTGTCTTTGTTTAGAGATTGTTCCTCTGTTGATTTTGTTACCCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTCTTTGTTTAGAGATTGTTCCTCTGTTGATTTTGTTACCCTCTA  100

seq1  TCAGCAGACGTGGGAGACTAGCTCTCTCCTCTGAGTTTCAGTGGTCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGACGTGGGAGACTAGCTCTCTCCTCTGAGTTTCAGTGGTCAGAG  150

seq1  CAGTCTCTGCAGGCAAGCTCTGCTCTTTCAGGGAAGGTGCACAGTTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGCAGGCAAGCTCTGCTCTTTCAGGGAAGGTGCACAGTTATCT  200

seq1  GGTGTTTGGACCTCCTCCTGGCTGAAGATGAAGGCCCAAAACAGGATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGGACCTCCTCCTGGCTGAAGATGAAGGCCCAAAACAGGATCTT  250

seq1  TCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGC  300

seq1  TGAAGATGGCGCCGCCTCAGAAGCTCTCTGGCTCTCGCCTGTCTCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGGCGCCGCCTCAGAAGCTCTCTGGCTCTCGCCTGTCTCAGAAA  350

seq1  CTGCTGGCCTCTGTATTCCACACCCTCAGCCGTGCAGCCTGCCCTCCGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCCTCTGTATTCCACACCCTCAGCCGTGCAGCCTGCCCTCCGCA  400

seq1  GAGTCCCGGAGCCAAGGTGGCTCCAGCCGGAGCCTGAGGCAGAAACCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCGGAGCCAAGGTGGCTCCAGCCGGAGCCTGAGGCAGAAACCTCT  450

seq1  CGGGCCGGGCTGACCCCTGTGCTCTCACCAGGAAGGTGGCCGGTTGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCGGGCTGACCCCTGTGCTCTCACCAGGAAGGTGGCCGGTTGTCTG  500

seq1  TCTTGCCAGATTTTTATATAAGGGCTATGCTAGGTTCAGAAAGAATTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCAGATTTTTATATAAGGGCTATGCTAGGTTCAGAAAGAATTAGT  550

seq1  ATTAGATTGAAATTATAGTTTATAATTTATAGTTTATAAACGCTTGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTGAAATTATAGTTTATAATTTATAGTTTATAAACGCTTGGCAG  600

seq1  AACTTACCAGTCAAACAGTGGAGTCTTGCTTTTGTTTTATTTAGGTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACCAGTCAAACAGTGGAGTCTTGCTTTTGTTTTATTTAGGTTTGA  650

seq1  GACTTTCTGTGTTTTACAGAACACTCTCATCCTTTTCAAGTTTATTAGCA  700
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTGTG-TTTACAGAACACTCTCATCCTTTTCAAGTTTATTAGCA  699

seq1  TAGGCATTCCACAGCGTAATTCTTAATCTTAAAGTCTGAGGCAGCTATAA  750
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  TAGGCATTCCACAGCGTAATTCTTAATCTTAAAGTCTGA-GCAGCTAT-A  747

seq1  TGTGTTGCTGCATCGTCCCTGTTCTCACCATTGTTCTTAATGCCATTTTT  800
      ||||||||||||||||||||||||||  || |||   |||||||||||||
seq2  TGTGTTGCTGCATCGTCCCTGTTCTCCACA-TGT--CTAATGCCATTTTT  794

seq1  TTTAAACTTTCGTTTTTTTAGGATACAGTCTTACTC--TGTAGTTCAGTC  848
      ||| ||||||||||||||||||||||||||||||||  ||||| ||||||
seq2  TTTTAACTTTCGTTTTTTTAGGATACAGTCTTACTCTTTGTAG-TCAGTC  843

seq1  TAACATTGTACTTGGAGCAATCCTGCTGTCTCAGCTTTCTGAGTGC  894
      ||||| |||||| ||||| |||   |||||||||||||||||||||
seq2  TAACA-TGTACTGGGAGC-ATCTGCCTGTCTCAGCTTTCTGAGTGC  887

seq1: chr13_25308472_25309605
seq2: B6Ng01-298G06.g_67_1197 (reverse)

seq1  GAGGATTCCTGAATGGTCACTGATCTTTAGT-GGTCTACACTGGAAGGCT  49
      ||||||||||| ||||||||||||||| ||| ||||||||||| |||   
seq2  GAGGATTCCTGGATGGTCACTGATCTTAAGTGGGTCTACACTGAAAG--C  48

seq1  TGTGAAGCTGGGTTCTGATGTCAGGGAAGG-AGGCAAGCAGTGGTGGCAG  98
      |||||||||||| ||||||||||||||||| ||||||||||| |||||| 
seq2  TGTGAAGCTGGG-TCTGATGTCAGGGAAGGAAGGCAAGCAGT-GTGGCA-  95

seq1  GAGCAGGATGACAAACTCGCCAAGTGGGAAGACAAGCTGGCGAAAGCAAA  148
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  GAGCAGGATGACAAACTCGCCAAGTGGGAAGACAAGCT-GCG-AAGCAAA  143

seq1  GCTGTCCCTTTCCTTAGCTGGGTCACTGCAAG-AAGGTAAGTGGGTCTTC  197
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  GCTGTCCCTTTCCTTAGCTGGGTCACTGCAAGAAAGGTAAGT-GGTCTTC  192

seq1  TCACTTCTGTT-AACTCAAGCATACCCACGGCCAGAGGTTGAGCTTGTCT  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTGTTAAACTCAAGCATACCCACGGCCAGAGGTTGAGCTTGTCT  242

seq1  ACAGAATCTCTCTCAGGTGTTGCAGG-AAGCTTGTCTCCTCCATGAATCT  295
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAGAATCTCTCTCAGGTGTTGCAGGAAAGCTTGTCTCCTCCATGAATCT  292

seq1  GGAGCCTGTCAGGTTGATAATCGTATTGACAATCACATCATAGAACTTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGTCAGGTTGATAATCGTATTGACAATCACATCATAGAACTTCA  342

seq1  TATGTTTAGGTGTTTGATGACAAACACACTTCTGAAGTGATTGTCTGTGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAGGTGTTTGATGACAAACACACTTCTGAAGTGATTGTCTGTGC  392

seq1  TTCCTGCCTGTGCATCTGACTTGGCAGAAGATCCTGCCTGTGCGTAGCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTGTGCATCTGACTTGGCAGAAGATCCTGCCTGTGCGTAGCTT  442

seq1  GCACTTTTAAACTTGTGAGCTCATCTGTGTACTTGTTATTTGCACGAGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTAAACTTGTGAGCTCATCTGTGTACTTGTTATTTGCACGAGGC  492

seq1  CCCTCATACTCTGGTTTCTGGAACTATCTCAGGAGAGGTTTCCCATTTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATACTCTGGTTTCTGGAACTATCTCAGGAGAGGTTTCCCATTTCA  542

seq1  CTTTGTGAGAGCCCTAGATGTTTTATGGTCCTGATTCTTGTTGATATCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGAGAGCCCTAGATGTTTTATGGTCCTGATTCTTGTTGATATCTG  592

seq1  AAGTCCCAGGGTACCTGTAGAGGGGTTTCAGGTTCTTGTGTCCTGGAACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCAGGGTACCTGTAGAGGGGTTTCAGGTTCTTGTGTCCTGGAACA  642

seq1  AATGGTTGATTGGGGACATGTATTTGTAGCCAAATCAGAGGCAGCAGACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGATTGGGGACATGTATTTGTAGCCAAATCAGAGGCAGCAGACA  692

seq1  AGAAGATACATATCCGAGAGAGTAAATGGGCCAAAGCATGAGAGAGCCAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATACATATCCGAGAGAGTAAATGGGCCAAAGCATGAGAGAGCCAG  742

seq1  GCAAAACAAAGGCTCTGCTGTACAGACTTGATGCTTTGACTCATTGGCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACAAAGGCTCTGCTGTACAGACTTGATGCTTTGACTCATTGGCCC  792

seq1  AGCACTGGCTTTTCTGCAATGCTTAGTTGCATGCAGCCTGACATACAACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGCTTTTCTGCAATGCTTAGTTGCATGCAGCCTGACATACAACT  842

seq1  TCATGTATTGCATCTCATCTGTATATTCAATAACCACCCAGAGGTATGTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATTGCATCTCATCTGTATATTCAATAACCACCCAGAGGTATGTG  892

seq1  TGTTGGTGTTGTAAGGATTCATACTTGCTCTTGGACCCTCTGAATTTCTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGTTGTAAGGATTCATACTTGCTCTTGGACCCTCTGAATTTCTC  942

seq1  TGCATCAGTGGTTTGAGTTGCCCACACTGGGCCTCAGTTGAGGCTTTTCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGTGGTTTGAGTTGCCCACACTGGGCCTCAGTTGAGGCTTTTCA  992

seq1  GCTTCTTCCCTTGCCAACCGAGTTTAATTCTACAACAGTCACATGATGCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCCCTTGCCAACCGAGTTTAATTCTACAACAGTCACATGATGCT  1042

seq1  TTCAGGATCGCCTGTCTGCCACACCCACCACTTCAGCTTGAAGAACGAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATCGCCTGTCTGCCACACCCACCACTTCAGCTTGAAGAACGAAA  1092

seq1  CGACTGTTATATAACAACCACCATTCCAGTTTGGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||
seq2  CGACTGTTATATAACAACCACCATTCCAGTTTGGAATTC  1131