BAC Information

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BAC

Clone NameB6Ng01-298K02
Chromosome13 (Build37)
Map Location 18,004,726 - 18,005,789
singlet/doubletsinglet
Overlap geneRala
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5
Downstream geneLOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2, Vps41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298K02.bB6Ng01-298K02.g
ACCGA093688GA093689
length1,0331,057
definitionB6Ng01-298K02.b B6Ng01-298K02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctatccatcttatttgtaaaagagtctcttgttcactactgtgtgtgtca
ggctagctggcccatgagatgctagagcactctctgcccacccccaagct
gcaatttcactatagtattacagactcgtgcctctatattagacttgata
tggggacccaaacccaggcccttctgcaagcactttatccaccaaaccat
cactctaatccccagactgagtttaaaatgaacaaaggacttgaacagac
ttttctccaaagaagacactcaaatagacaatatgtatgttaaataaatt
caatgttactaattatcaggaaaatgcaaaacaaaatctcatacctacta
agatcccctaatttgggcttctcagttggtagggtgcttgccccgcagga
acaaagccctggatttcatcctatccccacatacccatgtataatggtat
atccttataatcgcagaactcaggaggaggaagcaaggcagtaagaacac
atcctcatttacataatgagtttgaggctagcctagggtggaagccagcc
aaactaggatacatgagactgtctcaaaacaaaaacaaacaaacaaacaa
aaaggattgtgagttcaaggtcatcctggactatgtttttaaaattaaaa
ataaagttagcagaaatggtgtgtgtcagcagagatgtggaaattggcat
ctttgtgtactatggtgggaatgtggaatgatgttggagctgtgggaaat
agctaagtgttatgattcaaaaagaagcaaatgcactggaaaacccagta
aatcaactatcctgggctcacagcaactaaacccagtgactatcagggag
cctgtggtctgatctaagcgctctctctctctctctctctctctctctct
ctgtatatatatatatatatatatatatatatatatatatatatatatat
atatagagagagagagagagagacgagagagaggtgagagtgcgggatct
cttcaccgcttcgcacgctcgatgacttagtgc
gaattcacaggtcaagactcataagggcagagacaatataaatttcctcc
taggaagaatggcctcattaacagaaatgcttgagttctcaatccatact
gataccctgagtgtttttgaaaggaaacggcactaaaatatgaggaaata
tgcccactgtcttctaatattttattttacagtattcatcaaaatatttg
taaagcaagaaccagacagatataaacaagactcataagactgtgcaagg
aattatgtatcttgcatcaaaattcaatattaacagttaaagacttgagg
tgatagagcccatctgtttccatcttctgctgtgaggtagtcatatgctt
gaattgactaaaacaacccattctttctcctagattccacgtttcagtgg
atggcatgaccattgagtcatgctaaggtggccataacacaaacatgacg
ttgttcttcttgttccttactaacttctcatgtggaactcatctcacgcc
tcaaatccagccaccccactgttctcagctggggttactcttaggatgtt
gttatccaaggacaatctgttttaaagatgttttactcaatgtagttgtt
gacaggagacctcagttccttaccacttggctctctccactgggttactt
caaggtgatcatggtgtgacagctggctctctctagactgggttatctaa
gaaggcaaatcagaagcttctctgtttttaagcctttgaagttacactgt
aatattatttctcaatagtcttttggctccacaggtttgccattatttgt
tgtgaaagggaacacaaaggatttgaatatcaagaagcaaagatatttgg
tggacatcttggagatagctatcacaaacaactttccttgaaaactagga
aacattgctgagaaacctaaataataattccagatttttatgattagagc
ataatgatgggtacattgccaatttacccatctccaggcatactagtaag
agatatgcacactagtgccttttggaaagcctgtgagggactacctagat
tgttgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18004726_18005789
seq2: B6Ng01-298K02.g_69_1125

seq1  GAATTCACAGGTCAAGACTCATAAGGGCAGAGACAATATAAATTTCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTCAAGACTCATAAGGGCAGAGACAATATAAATTTCCTCC  50

seq1  TAGGAAGAATGGCCTCATTAACAGAAATGCTTGAGTTCTCAATCCATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAATGGCCTCATTAACAGAAATGCTTGAGTTCTCAATCCATACT  100

seq1  GATACCCTGAGTGTTTTTGAAAGGAAACGGCACTAAAATATGAGGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCTGAGTGTTTTTGAAAGGAAACGGCACTAAAATATGAGGAAATA  150

seq1  TGCCCACTGTCTTCTAATATTTTATTTTACAGTATTCATCAAAATATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTGTCTTCTAATATTTTATTTTACAGTATTCATCAAAATATTTG  200

seq1  TAAAGCAAGAACCAGACAGATATAAACAAGACTCATAAGACTGTGCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAAGAACCAGACAGATATAAACAAGACTCATAAGACTGTGCAAGG  250

seq1  AATTATGTATCTTGCATCAAAATTCAATATTAACAGTTAAAGACTTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTATCTTGCATCAAAATTCAATATTAACAGTTAAAGACTTGAGG  300

seq1  TGATAGAGCCCATCTGTTTCCATCTTCTGCTGTGAGGTAGTCATATGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAGCCCATCTGTTTCCATCTTCTGCTGTGAGGTAGTCATATGCTT  350

seq1  GAATTGACTAAAACAACCCATTCTTTCTCCTAGATTCCACGTTTCAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGACTAAAACAACCCATTCTTTCTCCTAGATTCCACGTTTCAGTGG  400

seq1  ATGGCATGACCATTGAGTCATGCTAAGGTGGCCATAACACAAACATGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGACCATTGAGTCATGCTAAGGTGGCCATAACACAAACATGACG  450

seq1  TTGTTCTTCTTGTTCCTTACTAACTTCTCATGTGGAACTCATCTCACGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTCTTGTTCCTTACTAACTTCTCATGTGGAACTCATCTCACGCC  500

seq1  TCAAATCCAGCCACCCCACTGTTCTCAGCTGGGGTTACTCTTAGGATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCAGCCACCCCACTGTTCTCAGCTGGGGTTACTCTTAGGATGTT  550

seq1  GTTATCCAAGGACAATCTGTTTTAAAGATGTTTTACTCAATGTAGTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCAAGGACAATCTGTTTTAAAGATGTTTTACTCAATGTAGTTGTT  600

seq1  GACAGGAGACCTCAGTTCCTTACCACTTGGCTCTCTCCACTGGGTTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGACCTCAGTTCCTTACCACTTGGCTCTCTCCACTGGGTTACTT  650

seq1  CAAGGTGATCATGGTGTGACAGCTGGCTCTCTCTAGACTGGGTTATCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGATCATGGTGTGACAGCTGGCTCTCTCTAGACTGGGTTATCTAA  700

seq1  GAAGGCAAATCAGAAGCTTCTCTGTTTTTAAGCCTTTGAAGTTACACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAATCAGAAGCTTCTCTGTTTTTAAGCCTTTGAAGTTACACTGT  750

seq1  AATATTATTTCTCAATAGTCTTTTGGCTCCACAGGTTTGCCATTATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTTCTCAATAGTCTTTTGGCTCCACAGGTTTGCCATTATTTGT  800

seq1  TGTGAAAGGGAACACAAAGGATTTGAATATCAAGAAGCAAAGATATTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGGGAACACAAAGGATTTGAATATCAAGAAGCAAAGATATTTGG  850

seq1  TGGACATCTTGGAGATAGCTATCACAAACAACTTTCCTTGAAAACTAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATCTTGGAGATAGCTATCACAAACAACTTTCCTTGAAAACTAGGA  900

seq1  AACATTGCTGAGAAACCTAAATAATAATTCCAGATTTTTAATGATTAGAG  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACATTGCTGAGAAACCTAAATAATAATTCCAGATTTTT-ATGATTAGAG  949

seq1  CATAATGATGGGTAACATTGCCAATTTAACCATCTCCAGGCATACTAGTA  1000
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CATAATGATGGGT-ACATTGCCAATTTACCCATCTCCAGGCATACTAGTA  998

seq1  AGAGATTATGCACACTAGGTTGCCTTTGGGAAAGCCTGTGAGGGACTACC  1050
      ||||| ||||||||||||  ||||||| ||||||||||||||||||||||
seq2  AGAGA-TATGCACACTAG--TGCCTTTTGGAAAGCCTGTGAGGGACTACC  1045

seq1  TAGATTTGGTTGAT  1064
      ||||||  ||||||
seq2  TAGATT--GTTGAT  1057