BAC Information

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BAC

Clone NameB6Ng01-298M07
Chromosome13 (Build37)
Map Location 47,516,794 - 47,647,823
singlet/doubletdoublet
Overlap genenone
Upstream geneRbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298M07.bB6Ng01-298M07.g
ACCGA093791GA093792
length1,0301,173
definitionB6Ng01-298M07.b B6Ng01-298M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,516,794 - 47,517,783)(47,646,642 - 47,647,823)
sequence
gaattctgagtgagcatttgaataaatgtctacaatgttttaatagtgtt
caaactaggaattaatttagggggtccatattttatacagctccattcaa
aacaacaattacttgcttacttatttgcattttaattcacttatatcctt
tagtggtggtataggattgtcagaattttgccaactcatgaacatgatat
agttgctttttcttttcttggtaacacaggaggggggcatattttcatac
cgttgtgacgatttttctttgtgtcctttccccttttgagctaaaatatt
tgtaggagttctttttctatcaagatgaggcagcttattgtccttcactc
cccattaacacttcaaaacttcaattttgttattttataatgttttgact
tctccatcgtgaagaagtgtttcattttatgtacctaacttatcagttgt
tttgtttaatgttgcctagcatttaatggtaaagttattactgattgtgg
tatgttcaggtcttgaagctttgaccactctagtgagtgcagactggtac
cccatgtggtcatagtttacctgattctagtgaataatcatattagatag
tatcttttctatacattttctctctttttttgccatttgtatattgtctt
agtcagtgtttctattcttgcacaaacgtcatgaccaagaagtaaattgg
ggaggaaagggtttattcagcttacacttctacattgctgttcatcacca
aagaagtcaggactggaactcaagcagggcaggaagcagagctgatgcag
aggccatggaggtgctcagcctgctctcttatagaaccaagactaccagc
ctagagatggcaccactcacaaggggacctccccacctgatcactaattg
agaaatgccttgcagctggatctcgtgaggcatttcctcaactaaagctc
cttctctgggataactccagcctgtgtcagttgaccacaaaactagcagt
acaatatatcttctttagtgaaacatttgt
gaattccgtggtccatgaaacatgctgaaaccttcctctttggctcacat
gccaagaaatattttactttgggtcacaggataaaagagacaaaattaaa
acagagatcttctgagtggctgcgtaggtgtcctaaggaagtagagccgt
ggctttcctcacatctctgctctggttagcagttgtgtcctccagcaaca
cagcaatcttctctgtaaaagcgatcttctcctctctggagtttcatttg
cttgataatgtattgatccagctaagaaaagtatctatgggccagggtac
tgggcccaaaccatcccaatgggttcatctctgtagctgagatgctccga
tttaattatggtctgtaaggattttctttttccaagaactctttttgcaa
ctgcctgttgatgggatgggttgattgtaaagagatctactcttgactgt
gtcttagagacacaagctttagaaagagataactagtaacatacttgtta
tgaaggatggtagagccaatgaaaaaatctaaatttctttatgattgttt
ttttttttaatgcaattggtaaatccagacctatggcttttgaggatgtc
ttgtaagctgctcttacctatgagaaatagttttcagtttgtatctatga
atccctttaccaacactgactgaacatctatatatgaagcaccattgcaa
cactggaatgtggaaaggaatgagaggtatactatctccatctttgctcc
cgatagatccctcataacataacaaaacaacatcatgtcatccacaccaa
agatggcatagaaagatgacttggaaaccatgggtctacatgtaccttct
gttctctcaagtgtaaataacttgtcaccaagcatgataactgaacacac
acacgcacacacacacacacacaaacaaacctctatatttccctccatac
ctcctttctagctacagattcaagccaccaccatacactcaaaagcacag
cacccactgaaatattgcatgcaattaaggcttctaatcagaagtagtac
cagaagacactggtggtcagagcctcaggcacgaagtcaagcatcggaag
agtgccagccaaagtggcaggtacctactcgaagccagagtgaccaaacc
agacatgtcttgatacaccactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_47516794_47517783
seq2: B6Ng01-298M07.b_47_1031

seq1  GAATTCTGAGTGAGCATTTGAATAAATGTCTACAATGTTTTAATAGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTGAGCATTTGAATAAATGTCTACAATGTTTTAATAGTGTT  50

seq1  CAAACTAGGAATTAATTTAGGGGGTCCATATTTTATACAGCTCCATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAGGAATTAATTTAGGGGGTCCATATTTTATACAGCTCCATTCAA  100

seq1  AACAACAATTACTTGCTTACTTATTTGCATTTTAATTCACTTATATCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATTACTTGCTTACTTATTTGCATTTTAATTCACTTATATCCTT  150

seq1  TAGTGGTGGTATAGGATTGTCAGAATTTTGCCAACTCATGAACATGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTGGTATAGGATTGTCAGAATTTTGCCAACTCATGAACATGATAT  200

seq1  AGTTGCTTTTTCTTTTCTTGGTAACACAGGAGGGGGGCATATTTTCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTTTTCTTTTCTTGGTAACACAGGAGGGGGGCATATTTTCATAC  250

seq1  CGTTGTGACGATTTTTCTTTGTGTCCTTTCCCCTTTTGAGCTAAAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTGACGATTTTTCTTTGTGTCCTTTCCCCTTTTGAGCTAAAATATT  300

seq1  TGTAGGAGTTCTTTTTCTATCAAGATGAGGCAGCTTATTGTCCTTCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAGTTCTTTTTCTATCAAGATGAGGCAGCTTATTGTCCTTCACTC  350

seq1  CCCATTAACACTTCAAAACTTCAATTTTGTTATTTTATAATGTTTTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAACACTTCAAAACTTCAATTTTGTTATTTTATAATGTTTTGACT  400

seq1  TCTCCATCGTGAAGAAGTGTTTCATTTTATGTACCTAACTTATCAGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCGTGAAGAAGTGTTTCATTTTATGTACCTAACTTATCAGTTGT  450

seq1  TTTGTTTAATGTTGCCTAGCATTTAATGGTAAAGTTATTACTGATTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAATGTTGCCTAGCATTTAATGGTAAAGTTATTACTGATTGTGG  500

seq1  TATGTTCAGGTCTTGAAGCTTTGACCACTCTAGTGAGTGCAGACTGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAGGTCTTGAAGCTTTGACCACTCTAGTGAGTGCAGACTGGTAC  550

seq1  CCCATGTGGTCATAGTTTACCTGATTCTAGTGAATAATCATATTAGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGGTCATAGTTTACCTGATTCTAGTGAATAATCATATTAGATAG  600

seq1  TATCTTTTCTATACATTTTCTCTCTTTTTTTGCCATTTGTATATTGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTCTATACATTTTCTCTCTTTTTTTGCCATTTGTATATTGTCTT  650

seq1  AGTCAGTGTTTCTATTCTTGCACAAACGTCATGACCAAGAAGTAAATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGTTTCTATTCTTGCACAAACGTCATGACCAAGAAGTAAATTGG  700

seq1  GGAGGAAAGGGTTTATTCAGCTTACACTTCTACATTGCTGTTCATCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAGGGTTTATTCAGCTTACACTTCTACATTGCTGTTCATCACCA  750

seq1  AAGAAGTCAGGACTGGAACTCAAGCAGGGCAGGAAGCAGGAGCTGATGCA  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGAAGTCAGGACTGGAACTCAAGCAGGGCAGGAAGCA-GAGCTGATGCA  799

seq1  GAGGCCATGGAGGTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATGGAGGTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAG  849

seq1  CCTAGAGATGGCACCACTCACAAGGGGACCTCCCCACCTGATCACTAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGATGGCACCACTCACAAGGGGACCTCCCCACCTGATCACTAATT  899

seq1  GAGAAAATGCCTTGCAGCTGGATCTCGTGGAGGCATTTCCTCAACTAAAG  950
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAG-AAATGCCTTGCAGCTGGATCTCGT-GAGGCATTTCCTCAACTAAAG  947

seq1  CTCCTTTCTCTGGGATAACTCCAGCCTGTGTCAAGTTGAC  990
      |||| ||||||||||||||||||||||||||| |||||||
seq2  CTCC-TTCTCTGGGATAACTCCAGCCTGTGTC-AGTTGAC  985

seq1: chr13_47646642_47647823
seq2: B6Ng01-298M07.g_69_1241 (reverse)

seq1  CAGTGG----TCAAGACATG-CTGGTTTGTGCACTCCTGGCTTCTGAAGT  45
      ||||||    |||||||||| ||||||||  |||| ||||||||   |||
seq2  CAGTGGTGTATCAAGACATGTCTGGTTTGGTCACT-CTGGCTTC--GAGT  47

seq1  AGTGTGCCTTGCCCACCTTTGCT-GCACTC-TCCTATGCTTTGACTTCGT  93
      || || |||   |||| || ||| |||||| ||| |||| ||||||||||
seq2  AG-GTACCT--GCCACTTTGGCTGGCACTCTTCCGATGC-TTGACTTCGT  93

seq1  GCTTGAGCCTCTGACCACAGTTGTCTTCTGGTAACTACTTCTGAATTTAA  143
      || |||| ||||||||||   ||||||||||| |||||||||||   | |
seq2  GCCTGAGGCTCTGACCACCAGTGTCTTCTGGT-ACTACTTCTGA---TTA  139

seq1  GAAACCCTTAATGCATTGCATATTTCCAGTTGGGTGCTGTGCTTTTGAGT  193
      ||| || | | |||||   |||||| ||| ||||||||||||||||||||
seq2  GAAGCCTTAATTGCATGCAATATTT-CAG-TGGGTGCTGTGCTTTTGAGT  187

seq1  GTATGGT-GTGGCTTGAATCTGTAGCTAGAAAAGGAGGTATGGAGGGAAA  242
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  GTATGGTGGTGGCTTGAATCTGTAGCTAG-AAAGGAGGTATGGAGGGAAA  236

seq1  TATTAGAGGTTTGTTTTGTGTGTGTGTGTGTGTGCGTGTGTGTGTTCAGT  292
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TA-TAGAGGTTTG-TTTGTGTGTGTGTGTGTGTGCGTGTGTGTGTTCAGT  284

seq1  TATCATGCTTTGTGAACAAGTTATTTACACTTGAGAGAACAGAAGGTACA  342
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  TATCATGCTTGGTG-ACAAGTTATTTACACTTGAGAGAACAGAAGGTACA  333

seq1  TGTAGACCCATGGTTCCCAAGTCATCTTTCTATGCCATCTTTGGTGTGGA  392
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTAGACCCATGGTTTCCAAGTCATCTTTCTATGCCATCTTTGGTGTGGA  383

seq1  TGACATGATGTTGTTTTGTTATGTTATGAGGGATCTATCGGGAGCAAAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGATGTTGTTTTGTTATGTTATGAGGGATCTATCGGGAGCAAAGA  433

seq1  TGGAGATAGTATACCTCTCATTCCTTTCCACATTCCAGTGTTGCAATGGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATAGTATACCTCTCATTCCTTTCCACATTCCAGTGTTGCAATGGT  483

seq1  GCTTCATATATAGATGTTCAGTCAGTGTTGGTAAAGGGATTCATAGATAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATATATAGATGTTCAGTCAGTGTTGGTAAAGGGATTCATAGATAC  533

seq1  AAACTGAAAACTATTTCTCATAGGTAAGAGCAGCTTACAAGACATCCTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAAACTATTTCTCATAGGTAAGAGCAGCTTACAAGACATCCTCA  583

seq1  AAAGCCATAGGTCTGGATTTACCAATTGCATTAAAAAAAAAAACAATCAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATAGGTCTGGATTTACCAATTGCATTAAAAAAAAAAACAATCAT  633

seq1  AAAGAAATTTAGATTTTTTCATTGGCTCTACCATCCTTCATAACAAGTAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTTAGATTTTTTCATTGGCTCTACCATCCTTCATAACAAGTAT  683

seq1  GTTACTAGTTATCTCTTTCTAAAGCTTGTGTCTCTAAGACACAGTCAAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTAGTTATCTCTTTCTAAAGCTTGTGTCTCTAAGACACAGTCAAGA  733

seq1  GTAGATCTCTTTACAATCAACCCATCCCATCAACAGGCAGTTGCAAAAAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTCTTTACAATCAACCCATCCCATCAACAGGCAGTTGCAAAAAG  783

seq1  AGTTCTTGGAAAAAGAAAATCCTTACAGACCATAATTAAATCGGAGCATC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGGAAAAAGAAAATCCTTACAGACCATAATTAAATCGGAGCATC  833

seq1  TCAGCTACAGAGATGAACCCATTGGGATGGTTTGGGCCCAGTACCCTGGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACAGAGATGAACCCATTGGGATGGTTTGGGCCCAGTACCCTGGC  883

seq1  CCATAGATACTTTTCTTAGCTGGATCAATACATTATCAAGCAAATGAAAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATACTTTTCTTAGCTGGATCAATACATTATCAAGCAAATGAAAC  933

seq1  TCCAGAGAGGAGAAGATCGCTTTTACAGAGAAGATTGCTGTGTTGCTGGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAGGAGAAGATCGCTTTTACAGAGAAGATTGCTGTGTTGCTGGA  983

seq1  GGACACAACTGCTAACCAGAGCAGAGATGTGAGGAAAGCCACGGCTCTAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAACTGCTAACCAGAGCAGAGATGTGAGGAAAGCCACGGCTCTAC  1033

seq1  TTCCTTAGGACACCTACGCAGCCACTCAGAAGATCTCTGTTTTAATTTTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGGACACCTACGCAGCCACTCAGAAGATCTCTGTTTTAATTTTG  1083

seq1  TCTCTTTTATCCTGTGACCCAAAGTAAAATATTTCTTGGCATGTGAGCCA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTATCCTGTGACCCAAAGTAAAATATTTCTTGGCATGTGAGCCA  1133

seq1  AAGAGGAAGGTTTCAGCATGTTTCATGGACCACGGAATTC  1182
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGGTTTCAGCATGTTTCATGGACCACGGAATTC  1173